Wall clock time and date at job start Tue Mar 31 2020 10:30:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47352 * 2 1 4 4 C 1.50699 * 109.47307 * 240.00218 * 2 1 3 5 5 H 1.08003 * 119.99588 * 240.00621 * 4 2 1 6 6 C 1.37875 * 120.00179 * 59.99705 * 4 2 1 7 7 N 1.31509 * 120.00157 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99792 * 180.02562 * 6 4 2 9 9 H 1.48493 * 109.47282 * 60.00609 * 8 6 4 10 10 H 1.48499 * 109.46610 * 180.02562 * 8 6 4 11 11 H 1.48491 * 109.47304 * 300.00139 * 8 6 4 12 12 C 1.52996 * 109.47148 * 119.99882 * 2 1 3 13 13 O 1.45201 * 109.47251 * 299.99940 * 12 2 1 14 14 C 1.34231 * 117.00055 * 179.97438 * 13 12 2 15 15 O 1.20829 * 120.00161 * 359.97438 * 14 13 12 16 16 C 1.50701 * 120.00154 * 180.02562 * 14 13 12 17 17 H 1.09009 * 110.74638 * 297.98358 * 16 14 13 18 18 C 1.54376 * 110.84925 * 61.44766 * 16 14 13 19 19 O 1.43240 * 107.58930 * 139.55072 * 18 16 14 20 20 C 1.43646 * 109.96841 * 1.71501 * 19 18 16 21 21 H 1.09002 * 110.30990 * 94.48674 * 20 19 18 22 22 C 1.53004 * 110.30972 * 216.55720 * 20 19 18 23 23 C 1.53003 * 109.46941 * 292.21142 * 22 20 19 24 24 C 1.50698 * 109.46764 * 179.97438 * 23 22 20 25 25 O 1.20827 * 120.00572 * 359.97438 * 24 23 22 26 26 O 1.34227 * 119.99872 * 179.97438 * 24 23 22 27 27 C 1.54945 * 105.13795 * 335.56984 * 20 19 18 28 28 H 1.09000 * 109.46999 * 300.00393 * 1 2 3 29 29 H 1.09004 * 109.46795 * 59.99576 * 1 2 3 30 30 H 1.08993 * 109.47215 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47209 * 179.97438 * 3 2 1 32 32 H 1.09004 * 109.47517 * 299.99981 * 3 2 1 33 33 H 1.09007 * 109.47015 * 59.99861 * 3 2 1 34 34 H 0.96991 * 120.00592 * 179.97438 * 7 6 4 35 35 H 1.09002 * 109.47481 * 180.02562 * 12 2 1 36 36 H 1.08999 * 109.47616 * 59.99873 * 12 2 1 37 37 H 1.08999 * 109.83271 * 20.03894 * 18 16 14 38 38 H 1.08999 * 109.91049 * 259.10553 * 18 16 14 39 39 H 1.09005 * 109.46636 * 52.20664 * 22 20 19 40 40 H 1.08997 * 109.47366 * 172.20689 * 22 20 19 41 41 H 1.09005 * 109.46596 * 299.99509 * 23 22 20 42 42 H 1.08997 * 109.47461 * 59.99605 * 23 22 20 43 43 H 0.96705 * 117.00456 * 179.97438 * 26 24 23 44 44 H 1.08997 * 111.12470 * 154.36151 * 27 20 19 45 45 H 1.08995 * 111.12619 * 278.53139 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2393 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 1.8259 -2.5202 -4.0077 10 1 1.8270 -0.4199 -5.2204 11 1 3.8064 -1.1209 -4.0081 12 6 2.0399 -0.7212 1.2492 13 8 1.5560 -0.0367 2.4348 14 6 1.9162 -0.5471 3.6229 15 8 2.6125 -1.5334 3.6707 16 6 1.4513 0.1094 4.8972 17 1 1.8337 1.1277 4.9688 18 6 -0.0894 0.0933 4.9932 19 8 -0.4354 -0.2045 6.3509 20 6 0.7557 -0.3412 7.1420 21 1 0.9984 0.6043 7.6269 22 6 0.5747 -1.4426 8.1886 23 6 -0.4636 -0.9992 9.2212 24 6 -0.6424 -2.0842 10.2516 25 8 -0.0052 -3.1074 10.1683 26 8 -1.5095 -1.9140 11.2619 27 6 1.8675 -0.7304 6.1355 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 0.7095 1.1618 -3.4843 35 1 3.1300 -0.7208 1.2495 36 1 1.6766 -1.7489 1.2493 37 1 -0.4931 -0.6735 4.3320 38 1 -0.4889 1.0686 4.7153 39 1 0.2342 -2.3556 7.6999 40 1 1.5257 -1.6302 8.6869 41 1 -0.1231 -0.0862 9.7097 42 1 -1.4147 -0.8116 8.7228 43 1 -1.5901 -2.6379 11.8980 44 1 2.8501 -0.4316 6.5006 45 1 1.8407 -1.7972 5.9136 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001588754578.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:30:39 Heat of formation + Delta-G solvation = -263.855258 kcal Electronic energy + Delta-G solvation = -26352.416323 eV Core-core repulsion = 22333.650355 eV Total energy + Delta-G solvation = -4018.765967 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.165 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.84961 -41.21861 -40.19505 -38.29209 -37.15044 -36.64155 -34.77048 -33.59581 -33.15925 -30.22630 -27.67197 -27.56607 -27.14739 -25.92311 -24.65274 -22.51570 -21.84615 -21.16893 -20.70613 -19.09766 -18.70566 -18.26267 -17.76495 -17.68238 -17.27522 -17.15812 -16.83465 -16.64245 -16.15072 -15.34432 -15.07790 -14.88146 -14.53431 -14.45485 -14.35944 -14.14240 -13.66049 -13.37316 -13.17026 -13.12056 -12.90738 -12.82308 -12.66542 -12.58433 -12.50157 -12.32516 -12.18619 -12.14738 -12.02923 -11.92508 -11.73383 -11.60178 -11.57543 -11.28801 -11.18005 -10.74507 -10.49975 -10.40365 -8.04937 -6.22932 1.12396 1.24766 1.43975 1.44226 1.51112 1.70605 2.19751 2.44406 2.74110 3.17771 3.18284 3.63616 3.75261 3.81029 4.02482 4.08987 4.13451 4.25131 4.26342 4.27145 4.43885 4.58571 4.60941 4.74530 4.75437 4.77985 4.86004 4.87417 5.00379 5.05088 5.09387 5.19682 5.23479 5.26141 5.36643 5.57700 5.64370 5.65530 5.66396 5.95490 6.08667 6.17918 6.36967 6.70196 6.82239 7.02053 7.44832 8.94281 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.035133 B = 0.002189 C = 0.002166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.782909 B =12788.659181 C =12921.374228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.060 3.940 3 C -0.118 4.118 4 C -0.535 4.535 5 H 0.047 0.953 6 C 0.028 3.972 7 N -0.898 5.898 8 Si 0.951 3.049 9 H -0.276 1.276 10 H -0.281 1.281 11 H -0.275 1.275 12 C 0.096 3.904 13 O -0.348 6.348 14 C 0.461 3.539 15 O -0.543 6.543 16 C -0.113 4.113 17 H 0.154 0.846 18 C 0.070 3.930 19 O -0.384 6.384 20 C 0.086 3.914 21 H 0.115 0.885 22 C -0.107 4.107 23 C -0.107 4.107 24 C 0.481 3.519 25 O -0.559 6.559 26 O -0.515 6.515 27 C -0.135 4.135 28 H 0.035 0.965 29 H 0.063 0.937 30 H 0.017 0.983 31 H 0.019 0.981 32 H 0.063 0.937 33 H 0.035 0.965 34 H 0.262 0.738 35 H 0.049 0.951 36 H 0.046 0.954 37 H 0.056 0.944 38 H 0.105 0.895 39 H 0.056 0.944 40 H 0.092 0.908 41 H 0.137 0.863 42 H 0.118 0.882 43 H 0.425 0.575 44 H 0.113 0.887 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.378 2.327 24.941 25.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.060 3.940 3 C -0.176 4.176 4 C -0.573 4.573 5 H 0.066 0.934 6 C -0.172 4.172 7 N -0.536 5.536 8 Si 0.777 3.223 9 H -0.202 1.202 10 H -0.206 1.206 11 H -0.200 1.200 12 C 0.023 3.977 13 O -0.264 6.264 14 C 0.305 3.695 15 O -0.433 6.433 16 C -0.132 4.132 17 H 0.172 0.828 18 C -0.007 4.007 19 O -0.304 6.304 20 C 0.029 3.971 21 H 0.132 0.868 22 C -0.144 4.144 23 C -0.144 4.144 24 C 0.326 3.674 25 O -0.451 6.451 26 O -0.329 6.329 27 C -0.172 4.172 28 H 0.054 0.946 29 H 0.082 0.918 30 H 0.037 0.963 31 H 0.038 0.962 32 H 0.082 0.918 33 H 0.054 0.946 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.074 0.926 38 H 0.123 0.877 39 H 0.075 0.925 40 H 0.111 0.889 41 H 0.155 0.845 42 H 0.136 0.864 43 H 0.287 0.713 44 H 0.132 0.868 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.276 2.179 24.539 24.852 hybrid contribution 0.671 -1.501 -1.035 1.943 sum -2.605 0.677 23.503 23.657 Atomic orbital electron populations 1.21620 0.97015 0.98525 1.00479 1.18272 0.93689 0.93382 0.88655 1.21617 0.97722 0.97770 1.00476 1.21163 1.32400 1.12480 0.91242 0.93425 1.25497 0.95019 0.95603 1.01116 1.69917 1.36577 1.23149 1.23916 0.85727 0.78668 0.78723 0.79174 1.20153 1.20645 1.20039 1.23258 0.97544 0.95104 0.81810 1.86513 1.69144 1.55675 1.15064 1.24034 0.76834 0.82091 0.86544 1.90631 1.37218 1.27022 1.88474 1.22752 0.98653 1.03312 0.88446 0.82799 1.22982 0.90917 1.02773 0.83998 1.88415 1.30510 1.92514 1.19006 1.23173 0.83043 0.99562 0.91291 0.86768 1.21553 1.00078 0.97751 0.95063 1.21396 1.03295 0.96604 0.93147 1.23972 0.74722 0.87706 0.80977 1.90736 1.47187 1.31525 1.75629 1.84515 1.59015 1.51300 1.38059 1.23310 1.01407 1.00429 0.92079 0.94573 0.91821 0.96344 0.96169 0.91842 0.94562 0.92800 0.93213 0.93527 0.92570 0.87737 0.92496 0.88905 0.84514 0.86424 0.71312 0.86834 0.91168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.60 8.11 71.98 0.58 -5.01 16 2 C 0.06 2.91 0.58 -52.93 -0.03 2.88 16 3 C -0.12 -5.52 8.11 71.98 0.58 -4.94 16 4 C -0.53 -28.55 8.01 25.60 0.21 -28.34 16 5 H 0.05 2.55 7.74 -2.91 -0.02 2.53 16 6 C 0.03 1.48 5.15 84.65 0.44 1.91 16 7 N -0.90 -48.38 9.35 21.45 0.20 -48.18 16 8 Si 0.95 42.48 29.54 68.60 2.03 44.51 16 9 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 10 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 11 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 12 C 0.10 4.20 4.26 71.98 0.31 4.51 16 13 O -0.35 -12.97 8.86 -51.43 -0.46 -13.43 16 14 C 0.46 14.94 7.13 71.24 0.51 15.44 16 15 O -0.54 -20.93 15.51 21.96 0.34 -20.59 16 16 C -0.11 -2.37 3.50 -10.28 -0.04 -2.41 16 17 H 0.15 2.31 8.14 -2.38 -0.02 2.29 16 18 C 0.07 1.44 7.38 72.45 0.53 1.98 16 19 O -0.38 -7.36 10.75 -148.98 -1.60 -8.96 16 20 C 0.09 1.20 3.41 31.26 0.11 1.31 16 21 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 22 C -0.11 -1.55 4.25 30.60 0.13 -1.42 16 23 C -0.11 -1.16 5.73 29.85 0.17 -0.99 16 24 C 0.48 7.27 8.33 71.24 0.59 7.87 16 25 O -0.56 -12.91 16.74 21.96 0.37 -12.55 16 26 O -0.52 -5.34 13.42 -51.39 -0.69 -6.03 16 27 C -0.13 -2.45 5.65 32.05 0.18 -2.27 16 28 H 0.04 1.51 7.68 -2.39 -0.02 1.49 16 29 H 0.06 3.28 6.07 -2.39 -0.01 3.26 16 30 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.06 3.25 6.07 -2.39 -0.01 3.23 16 33 H 0.04 1.50 7.68 -2.38 -0.02 1.48 16 34 H 0.26 13.56 8.31 -92.71 -0.77 12.79 16 35 H 0.05 2.21 8.13 -2.39 -0.02 2.19 16 36 H 0.05 2.10 8.13 -2.39 -0.02 2.08 16 37 H 0.06 1.39 7.81 -2.39 -0.02 1.38 16 38 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.06 1.13 8.10 -2.38 -0.02 1.11 16 40 H 0.09 1.24 8.10 -2.39 -0.02 1.22 16 41 H 0.14 0.68 8.14 -2.38 -0.02 0.66 16 42 H 0.12 1.27 7.95 -2.39 -0.02 1.25 16 43 H 0.43 1.22 9.10 -74.05 -0.67 0.55 16 44 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 45 H 0.07 1.67 7.39 -2.39 -0.02 1.65 16 Total: -1.00 -68.84 370.34 4.78 -64.06 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: 0.32 Total: 10.64 kcal Atomic # 6 Polarization: -13.75 SS G_CDS: 4.27 Total: -9.47 kcal Atomic # 7 Polarization: -48.38 SS G_CDS: 0.20 Total: -48.18 kcal Atomic # 8 Polarization: -59.51 SS G_CDS: -2.04 Total: -61.55 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.51 kcal Total: -68.84 4.78 -64.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588754578.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -199.791 kcal (2) G-P(sol) polarization free energy of solvation -68.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -268.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -263.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds