Wall clock time and date at job start Tue Mar 31 2020 10:30:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 C 1.52999 * 109.46623 * 2 1
4 4 C 1.50697 * 109.47239 * 240.00432 * 2 1 3
5 5 H 1.08001 * 119.99890 * 240.00284 * 4 2 1
6 6 C 1.37876 * 120.00428 * 59.99630 * 4 2 1
7 7 N 1.31519 * 119.99563 * 0.02562 * 6 4 2
8 8 Si 1.86800 * 120.00432 * 179.97438 * 6 4 2
9 9 H 1.48506 * 109.46838 * 89.99826 * 8 6 4
10 10 H 1.48497 * 109.47419 * 209.99978 * 8 6 4
11 11 H 1.48499 * 109.47011 * 330.00539 * 8 6 4
12 12 C 1.52997 * 109.47127 * 119.99936 * 2 1 3
13 13 O 1.45199 * 109.47075 * 300.00189 * 12 2 1
14 14 C 1.34230 * 116.99614 * 179.97438 * 13 12 2
15 15 O 1.20824 * 120.00179 * 0.02562 * 14 13 12
16 16 C 1.50706 * 119.99717 * 179.97438 * 14 13 12
17 17 H 1.09002 * 110.45447 * 57.39893 * 16 14 13
18 18 C 1.54477 * 110.51267 * 294.64781 * 16 14 13
19 19 O 1.44426 * 104.79857 * 217.37762 * 18 16 14
20 20 C 1.44425 * 105.28027 * 40.50932 * 19 18 16
21 21 H 1.09001 * 110.46312 * 78.36722 * 20 19 18
22 22 C 1.53001 * 110.37558 * 200.65521 * 20 19 18
23 23 C 1.53004 * 109.47136 * 290.38490 * 22 20 19
24 24 C 1.50700 * 109.47108 * 179.97438 * 23 22 20
25 25 O 1.20832 * 119.99636 * 359.97438 * 24 23 22
26 26 O 1.34223 * 120.00243 * 179.97438 * 24 23 22
27 27 C 1.54478 * 104.80266 * 319.49135 * 20 19 18
28 28 H 1.08993 * 109.46955 * 300.00075 * 1 2 3
29 29 H 1.09000 * 109.47050 * 59.99904 * 1 2 3
30 30 H 1.09001 * 109.47002 * 179.97438 * 1 2 3
31 31 H 1.09002 * 109.46716 * 179.97438 * 3 2 1
32 32 H 1.09000 * 109.47486 * 299.99829 * 3 2 1
33 33 H 1.09001 * 109.47362 * 60.00551 * 3 2 1
34 34 H 0.97002 * 119.99731 * 180.02562 * 7 6 4
35 35 H 1.09002 * 109.47153 * 180.02562 * 12 2 1
36 36 H 1.09001 * 109.46832 * 60.00321 * 12 2 1
37 37 H 1.08995 * 110.37205 * 336.20366 * 18 16 14
38 38 H 1.08992 * 110.37363 * 98.54655 * 18 16 14
39 39 H 1.09003 * 109.46544 * 50.38118 * 22 20 19
40 40 H 1.08994 * 109.47201 * 170.38171 * 22 20 19
41 41 H 1.08996 * 109.46614 * 299.99753 * 23 22 20
42 42 H 1.08996 * 109.47031 * 59.99334 * 23 22 20
43 43 H 0.96698 * 117.00499 * 179.97438 * 26 24 23
44 44 H 1.09002 * 110.50731 * 265.33302 * 27 20 19
45 45 H 1.08996 * 110.62975 * 142.68113 * 27 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 6 2.0324 -0.7103 -1.2305
5 1 2.6533 -1.5884 -1.1314
6 6 1.6993 -0.2393 -2.4828
7 7 0.9436 0.8303 -2.6034
8 14 2.3226 -1.1193 -4.0080
9 1 1.3450 -2.1614 -4.4124
10 1 2.4873 -0.1400 -5.1121
11 1 3.6310 -1.7564 -3.7120
12 6 2.0401 -0.7212 1.2492
13 8 1.5560 -0.0368 2.4348
14 6 1.9163 -0.5472 3.6228
15 8 2.6134 -1.5329 3.6705
16 6 1.4522 0.1100 4.8972
17 1 0.3637 0.1600 4.9255
18 6 2.0655 1.5213 5.0329
19 8 2.3469 1.6673 6.4419
20 6 2.8665 0.3866 6.8610
21 1 3.9098 0.2826 6.5628
22 6 2.7282 0.2256 8.3762
23 6 3.6950 1.1794 9.0809
24 6 3.5582 1.0212 10.5733
25 8 2.7682 0.2274 11.0268
26 8 4.3140 1.7621 11.3988
27 6 1.9913 -0.6537 6.1274
28 1 -0.3633 0.5138 0.8899
29 1 -0.3633 0.5138 -0.8900
30 1 -0.3633 -1.0277 -0.0005
31 1 3.1300 1.4425 0.0005
32 1 1.6766 1.9564 -0.8900
33 1 1.6767 1.9563 0.8900
34 1 0.7089 1.1615 -3.4844
35 1 3.1301 -0.7208 1.2495
36 1 1.6767 -1.7489 1.2492
37 1 2.9856 1.5925 4.4529
38 1 1.3516 2.2781 4.7081
39 1 1.7059 0.4586 8.6744
40 1 2.9630 -0.8015 8.6554
41 1 4.7171 0.9464 8.7826
42 1 3.4602 2.2065 8.8016
43 1 4.1906 1.6258 12.3481
44 1 1.1694 -0.9790 6.7652
45 1 2.5915 -1.5078 5.8140
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001588754579.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:30:43
Heat of formation + Delta-G solvation = -244.313409 kcal
Electronic energy + Delta-G solvation = -26353.372765 eV
Core-core repulsion = 22335.454195 eV
Total energy + Delta-G solvation = -4017.918569 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 314.165 amu
Computer time = 0.58 seconds
Orbital eigenvalues (eV)
-40.78637 -40.46511 -39.11024 -36.68040 -36.55559 -34.91740 -34.10283 -32.50964
-31.27986 -29.41912 -25.99781 -25.66149 -25.27452 -25.11603 -23.43102 -21.93935
-21.03144 -20.02611 -18.90660 -18.45797 -17.81188 -17.02687 -16.70020 -16.27073
-16.10789 -15.88715 -15.63067 -15.30039 -15.01441 -14.57596 -13.84437 -13.68590
-13.51415 -13.09661 -13.03474 -12.86465 -12.42896 -12.15831 -11.93323 -11.91990
-11.73106 -11.52917 -11.40278 -11.35212 -11.16013 -11.01499 -10.96219 -10.90217
-10.73311 -10.45831 -10.25968 -10.09055 -10.03491 -9.95872 -9.46411 -9.35924
-8.79962 -8.41011 -6.05362 -4.17087 1.84427 2.45194 2.65870 3.02749
3.25441 3.32557 3.36282 3.66430 4.20033 4.29830 4.35417 4.55353
4.66092 4.71209 4.84505 4.96874 5.08943 5.13237 5.21096 5.29459
5.34680 5.48916 5.55480 5.66190 5.70986 5.82353 5.86333 6.02307
6.04294 6.13031 6.41308 6.53671 6.69782 6.93847 6.99334 7.09367
7.10252 7.35735 7.51195 7.58073 7.66686 8.01277 8.07850 8.17186
8.35267 8.82715 9.48574 10.95794
Molecular weight = 314.17amu
Principal moments of inertia in cm(-1)
A = 0.040611 B = 0.002154 C = 0.002134
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 689.311185 B =12993.849474 C =13119.038254
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.130 4.130
2 C 0.070 3.930
3 C -0.129 4.129
4 C -0.512 4.512
5 H 0.056 0.944
6 C 0.068 3.932
7 N -0.882 5.882
8 Si 0.896 3.104
9 H -0.280 1.280
10 H -0.286 1.286
11 H -0.274 1.274
12 C 0.084 3.916
13 O -0.345 6.345
14 C 0.461 3.539
15 O -0.516 6.516
16 C -0.119 4.119
17 H 0.120 0.880
18 C 0.063 3.937
19 O -0.367 6.367
20 C 0.073 3.927
21 H 0.076 0.924
22 C -0.102 4.102
23 C -0.114 4.114
24 C 0.479 3.521
25 O -0.518 6.518
26 O -0.519 6.519
27 C -0.145 4.145
28 H 0.016 0.984
29 H 0.084 0.916
30 H 0.022 0.978
31 H 0.022 0.978
32 H 0.084 0.916
33 H 0.016 0.984
34 H 0.261 0.739
35 H 0.057 0.943
36 H 0.057 0.943
37 H 0.068 0.932
38 H 0.109 0.891
39 H 0.084 0.916
40 H 0.088 0.912
41 H 0.107 0.893
42 H 0.115 0.885
43 H 0.409 0.591
44 H 0.087 0.913
45 H 0.104 0.896
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.477 2.823 22.105 22.554
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.187 4.187
2 C 0.069 3.931
3 C -0.187 4.187
4 C -0.550 4.550
5 H 0.075 0.925
6 C -0.134 4.134
7 N -0.520 5.520
8 Si 0.724 3.276
9 H -0.206 1.206
10 H -0.211 1.211
11 H -0.199 1.199
12 C 0.011 3.989
13 O -0.260 6.260
14 C 0.304 3.696
15 O -0.405 6.405
16 C -0.139 4.139
17 H 0.138 0.862
18 C -0.014 4.014
19 O -0.286 6.286
20 C 0.016 3.984
21 H 0.094 0.906
22 C -0.139 4.139
23 C -0.151 4.151
24 C 0.322 3.678
25 O -0.406 6.406
26 O -0.331 6.331
27 C -0.182 4.182
28 H 0.036 0.964
29 H 0.103 0.897
30 H 0.042 0.958
31 H 0.042 0.958
32 H 0.103 0.897
33 H 0.035 0.965
34 H 0.071 0.929
35 H 0.075 0.925
36 H 0.075 0.925
37 H 0.087 0.913
38 H 0.127 0.873
39 H 0.103 0.897
40 H 0.106 0.894
41 H 0.125 0.875
42 H 0.133 0.867
43 H 0.268 0.732
44 H 0.105 0.895
45 H 0.122 0.878
Dipole moment (debyes) X Y Z Total
from point charges 3.412 2.684 21.741 22.170
hybrid contribution 0.320 -0.938 -0.460 1.092
sum 3.732 1.747 21.281 21.676
Atomic orbital electron populations
1.21773 0.97292 0.98958 1.00708 1.18256 0.93451 0.93110 0.88264
1.21770 0.98061 0.98147 1.00714 1.20921 1.32033 1.12298 0.89784
0.92530 1.24864 0.94816 0.94909 0.98813 1.69828 1.36297 1.22492
1.23344 0.86534 0.79280 0.79373 0.82459 1.20638 1.21132 1.19915
1.23719 0.98205 0.95845 0.81135 1.86528 1.68897 1.55721 1.14851
1.23174 0.77602 0.82496 0.86375 1.90605 1.35968 1.25890 1.88057
1.22375 1.03895 0.96966 0.90664 0.86240 1.23294 1.00544 0.94735
0.82819 1.89132 1.84265 1.32009 1.23220 1.23050 0.97918 0.83334
0.94113 0.90564 1.21514 1.00592 0.99837 0.91988 1.21394 1.03250
1.04329 0.86135 1.23642 0.76648 0.76675 0.90852 1.90737 1.35873
1.35506 1.78500 1.84551 1.62437 1.62904 1.23208 1.23058 1.00958
0.99607 0.94604 0.96446 0.89702 0.95849 0.95839 0.89694 0.96451
0.92870 0.92487 0.92480 0.91346 0.87275 0.89743 0.89387 0.87474
0.86734 0.73202 0.89468 0.87784
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -3.05 8.11 37.16 0.30 -2.75 16
2 C 0.07 1.66 0.58 -155.66 -0.09 1.57 16
3 C -0.13 -3.02 8.11 37.16 0.30 -2.72 16
4 C -0.51 -13.46 8.01 -34.44 -0.28 -13.73 16
5 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16
6 C 0.07 1.78 5.15 -17.82 -0.09 1.69 16
7 N -0.88 -23.59 9.35 55.43 0.52 -23.07 16
8 Si 0.90 20.59 29.54 -169.99 -5.02 15.57 16
9 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16
10 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16
11 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16
12 C 0.08 1.80 4.26 37.16 0.16 1.96 16
13 O -0.34 -6.51 8.88 -39.26 -0.35 -6.85 16
14 C 0.46 7.57 7.14 36.01 0.26 7.83 16
15 O -0.52 -9.65 15.03 -18.75 -0.28 -9.94 16
16 C -0.12 -1.42 3.62 -90.20 -0.33 -1.75 16
17 H 0.12 1.25 8.14 -51.93 -0.42 0.82 16
18 C 0.06 0.70 7.17 37.93 0.27 0.97 16
19 O -0.37 -3.93 11.13 -35.23 -0.39 -4.32 16
20 C 0.07 0.68 3.25 -25.95 -0.08 0.59 16
21 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16
22 C -0.10 -0.81 4.13 -26.73 -0.11 -0.92 16
23 C -0.11 -0.77 5.75 -27.88 -0.16 -0.93 16
24 C 0.48 3.88 8.33 36.01 0.30 4.18 16
25 O -0.52 -5.84 16.74 -18.75 -0.31 -6.16 16
26 O -0.52 -3.16 13.42 -39.24 -0.53 -3.69 16
27 C -0.14 -1.50 6.21 -25.16 -0.16 -1.65 16
28 H 0.02 0.36 7.68 -51.93 -0.40 -0.04 16
29 H 0.08 2.17 6.07 -51.93 -0.32 1.86 16
30 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16
31 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16
32 H 0.08 2.16 6.07 -51.93 -0.32 1.85 16
33 H 0.02 0.36 7.68 -51.93 -0.40 -0.04 16
34 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16
35 H 0.06 1.24 8.13 -51.93 -0.42 0.81 16
36 H 0.06 1.24 8.13 -51.93 -0.42 0.82 16
37 H 0.07 0.80 7.86 -51.93 -0.41 0.39 16
38 H 0.11 1.08 8.14 -51.93 -0.42 0.66 16
39 H 0.08 0.74 8.10 -51.93 -0.42 0.32 16
40 H 0.09 0.67 8.10 -51.93 -0.42 0.25 16
41 H 0.11 0.56 8.14 -51.93 -0.42 0.13 16
42 H 0.11 0.75 8.01 -51.93 -0.42 0.33 16
43 H 0.41 0.86 9.10 45.56 0.41 1.28 16
44 H 0.09 0.77 7.87 -51.93 -0.41 0.36 16
45 H 0.10 1.22 6.50 -51.93 -0.34 0.88 16
LS Contribution 369.45 15.07 5.57 5.57
Total: -1.00 -31.15 369.45 -6.85 -38.00
By element:
Atomic # 1 Polarization: 6.91 SS G_CDS: -6.35 Total: 0.56 kcal
Atomic # 6 Polarization: -5.96 SS G_CDS: 0.29 Total: -5.66 kcal
Atomic # 7 Polarization: -23.59 SS G_CDS: 0.52 Total: -23.07 kcal
Atomic # 8 Polarization: -29.10 SS G_CDS: -1.86 Total: -30.96 kcal
Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal
Total LS contribution 5.57 Total: 5.57 kcal
Total: -31.15 -6.85 -38.00 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001588754579.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -206.316 kcal
(2) G-P(sol) polarization free energy of solvation -31.146 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -237.461 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.852 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.998 kcal
(6) G-S(sol) free energy of system = (1) + (5) -244.313 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.58 seconds