Wall clock time and date at job start Tue Mar 31 2020 10:30:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46623 * 2 1 4 4 C 1.50697 * 109.47239 * 240.00432 * 2 1 3 5 5 H 1.08001 * 119.99890 * 240.00284 * 4 2 1 6 6 C 1.37876 * 120.00428 * 59.99630 * 4 2 1 7 7 N 1.31519 * 119.99563 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00432 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46838 * 89.99826 * 8 6 4 10 10 H 1.48497 * 109.47419 * 209.99978 * 8 6 4 11 11 H 1.48499 * 109.47011 * 330.00539 * 8 6 4 12 12 C 1.52997 * 109.47127 * 119.99936 * 2 1 3 13 13 O 1.45199 * 109.47075 * 300.00189 * 12 2 1 14 14 C 1.34230 * 116.99614 * 179.97438 * 13 12 2 15 15 O 1.20824 * 120.00179 * 0.02562 * 14 13 12 16 16 C 1.50706 * 119.99717 * 179.97438 * 14 13 12 17 17 H 1.09002 * 110.45447 * 57.39893 * 16 14 13 18 18 C 1.54477 * 110.51267 * 294.64781 * 16 14 13 19 19 O 1.44426 * 104.79857 * 217.37762 * 18 16 14 20 20 C 1.44425 * 105.28027 * 40.50932 * 19 18 16 21 21 H 1.09001 * 110.46312 * 78.36722 * 20 19 18 22 22 C 1.53001 * 110.37558 * 200.65521 * 20 19 18 23 23 C 1.53004 * 109.47136 * 290.38490 * 22 20 19 24 24 C 1.50700 * 109.47108 * 179.97438 * 23 22 20 25 25 O 1.20832 * 119.99636 * 359.97438 * 24 23 22 26 26 O 1.34223 * 120.00243 * 179.97438 * 24 23 22 27 27 C 1.54478 * 104.80266 * 319.49135 * 20 19 18 28 28 H 1.08993 * 109.46955 * 300.00075 * 1 2 3 29 29 H 1.09000 * 109.47050 * 59.99904 * 1 2 3 30 30 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46716 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47486 * 299.99829 * 3 2 1 33 33 H 1.09001 * 109.47362 * 60.00551 * 3 2 1 34 34 H 0.97002 * 119.99731 * 180.02562 * 7 6 4 35 35 H 1.09002 * 109.47153 * 180.02562 * 12 2 1 36 36 H 1.09001 * 109.46832 * 60.00321 * 12 2 1 37 37 H 1.08995 * 110.37205 * 336.20366 * 18 16 14 38 38 H 1.08992 * 110.37363 * 98.54655 * 18 16 14 39 39 H 1.09003 * 109.46544 * 50.38118 * 22 20 19 40 40 H 1.08994 * 109.47201 * 170.38171 * 22 20 19 41 41 H 1.08996 * 109.46614 * 299.99753 * 23 22 20 42 42 H 1.08996 * 109.47031 * 59.99334 * 23 22 20 43 43 H 0.96698 * 117.00499 * 179.97438 * 26 24 23 44 44 H 1.09002 * 110.50731 * 265.33302 * 27 20 19 45 45 H 1.08996 * 110.62975 * 142.68113 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2393 -2.4828 7 7 0.9436 0.8303 -2.6034 8 14 2.3226 -1.1193 -4.0080 9 1 1.3450 -2.1614 -4.4124 10 1 2.4873 -0.1400 -5.1121 11 1 3.6310 -1.7564 -3.7120 12 6 2.0401 -0.7212 1.2492 13 8 1.5560 -0.0368 2.4348 14 6 1.9163 -0.5472 3.6228 15 8 2.6134 -1.5329 3.6705 16 6 1.4522 0.1100 4.8972 17 1 0.3637 0.1600 4.9255 18 6 2.0655 1.5213 5.0329 19 8 2.3469 1.6673 6.4419 20 6 2.8665 0.3866 6.8610 21 1 3.9098 0.2826 6.5628 22 6 2.7282 0.2256 8.3762 23 6 3.6950 1.1794 9.0809 24 6 3.5582 1.0212 10.5733 25 8 2.7682 0.2274 11.0268 26 8 4.3140 1.7621 11.3988 27 6 1.9913 -0.6537 6.1274 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 0.7089 1.1615 -3.4844 35 1 3.1301 -0.7208 1.2495 36 1 1.6767 -1.7489 1.2492 37 1 2.9856 1.5925 4.4529 38 1 1.3516 2.2781 4.7081 39 1 1.7059 0.4586 8.6744 40 1 2.9630 -0.8015 8.6554 41 1 4.7171 0.9464 8.7826 42 1 3.4602 2.2065 8.8016 43 1 4.1906 1.6258 12.3481 44 1 1.1694 -0.9790 6.7652 45 1 2.5915 -1.5078 5.8140 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588754579.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:30:43 Heat of formation + Delta-G solvation = -244.313409 kcal Electronic energy + Delta-G solvation = -26353.372765 eV Core-core repulsion = 22335.454195 eV Total energy + Delta-G solvation = -4017.918569 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.165 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.78637 -40.46511 -39.11024 -36.68040 -36.55559 -34.91740 -34.10283 -32.50964 -31.27986 -29.41912 -25.99781 -25.66149 -25.27452 -25.11603 -23.43102 -21.93935 -21.03144 -20.02611 -18.90660 -18.45797 -17.81188 -17.02687 -16.70020 -16.27073 -16.10789 -15.88715 -15.63067 -15.30039 -15.01441 -14.57596 -13.84437 -13.68590 -13.51415 -13.09661 -13.03474 -12.86465 -12.42896 -12.15831 -11.93323 -11.91990 -11.73106 -11.52917 -11.40278 -11.35212 -11.16013 -11.01499 -10.96219 -10.90217 -10.73311 -10.45831 -10.25968 -10.09055 -10.03491 -9.95872 -9.46411 -9.35924 -8.79962 -8.41011 -6.05362 -4.17087 1.84427 2.45194 2.65870 3.02749 3.25441 3.32557 3.36282 3.66430 4.20033 4.29830 4.35417 4.55353 4.66092 4.71209 4.84505 4.96874 5.08943 5.13237 5.21096 5.29459 5.34680 5.48916 5.55480 5.66190 5.70986 5.82353 5.86333 6.02307 6.04294 6.13031 6.41308 6.53671 6.69782 6.93847 6.99334 7.09367 7.10252 7.35735 7.51195 7.58073 7.66686 8.01277 8.07850 8.17186 8.35267 8.82715 9.48574 10.95794 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.040611 B = 0.002154 C = 0.002134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.311185 B =12993.849474 C =13119.038254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.070 3.930 3 C -0.129 4.129 4 C -0.512 4.512 5 H 0.056 0.944 6 C 0.068 3.932 7 N -0.882 5.882 8 Si 0.896 3.104 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.274 1.274 12 C 0.084 3.916 13 O -0.345 6.345 14 C 0.461 3.539 15 O -0.516 6.516 16 C -0.119 4.119 17 H 0.120 0.880 18 C 0.063 3.937 19 O -0.367 6.367 20 C 0.073 3.927 21 H 0.076 0.924 22 C -0.102 4.102 23 C -0.114 4.114 24 C 0.479 3.521 25 O -0.518 6.518 26 O -0.519 6.519 27 C -0.145 4.145 28 H 0.016 0.984 29 H 0.084 0.916 30 H 0.022 0.978 31 H 0.022 0.978 32 H 0.084 0.916 33 H 0.016 0.984 34 H 0.261 0.739 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.068 0.932 38 H 0.109 0.891 39 H 0.084 0.916 40 H 0.088 0.912 41 H 0.107 0.893 42 H 0.115 0.885 43 H 0.409 0.591 44 H 0.087 0.913 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.477 2.823 22.105 22.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.069 3.931 3 C -0.187 4.187 4 C -0.550 4.550 5 H 0.075 0.925 6 C -0.134 4.134 7 N -0.520 5.520 8 Si 0.724 3.276 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 C 0.011 3.989 13 O -0.260 6.260 14 C 0.304 3.696 15 O -0.405 6.405 16 C -0.139 4.139 17 H 0.138 0.862 18 C -0.014 4.014 19 O -0.286 6.286 20 C 0.016 3.984 21 H 0.094 0.906 22 C -0.139 4.139 23 C -0.151 4.151 24 C 0.322 3.678 25 O -0.406 6.406 26 O -0.331 6.331 27 C -0.182 4.182 28 H 0.036 0.964 29 H 0.103 0.897 30 H 0.042 0.958 31 H 0.042 0.958 32 H 0.103 0.897 33 H 0.035 0.965 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.087 0.913 38 H 0.127 0.873 39 H 0.103 0.897 40 H 0.106 0.894 41 H 0.125 0.875 42 H 0.133 0.867 43 H 0.268 0.732 44 H 0.105 0.895 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 3.412 2.684 21.741 22.170 hybrid contribution 0.320 -0.938 -0.460 1.092 sum 3.732 1.747 21.281 21.676 Atomic orbital electron populations 1.21773 0.97292 0.98958 1.00708 1.18256 0.93451 0.93110 0.88264 1.21770 0.98061 0.98147 1.00714 1.20921 1.32033 1.12298 0.89784 0.92530 1.24864 0.94816 0.94909 0.98813 1.69828 1.36297 1.22492 1.23344 0.86534 0.79280 0.79373 0.82459 1.20638 1.21132 1.19915 1.23719 0.98205 0.95845 0.81135 1.86528 1.68897 1.55721 1.14851 1.23174 0.77602 0.82496 0.86375 1.90605 1.35968 1.25890 1.88057 1.22375 1.03895 0.96966 0.90664 0.86240 1.23294 1.00544 0.94735 0.82819 1.89132 1.84265 1.32009 1.23220 1.23050 0.97918 0.83334 0.94113 0.90564 1.21514 1.00592 0.99837 0.91988 1.21394 1.03250 1.04329 0.86135 1.23642 0.76648 0.76675 0.90852 1.90737 1.35873 1.35506 1.78500 1.84551 1.62437 1.62904 1.23208 1.23058 1.00958 0.99607 0.94604 0.96446 0.89702 0.95849 0.95839 0.89694 0.96451 0.92870 0.92487 0.92480 0.91346 0.87275 0.89743 0.89387 0.87474 0.86734 0.73202 0.89468 0.87784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.05 8.11 37.16 0.30 -2.75 16 2 C 0.07 1.66 0.58 -155.66 -0.09 1.57 16 3 C -0.13 -3.02 8.11 37.16 0.30 -2.72 16 4 C -0.51 -13.46 8.01 -34.44 -0.28 -13.73 16 5 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 6 C 0.07 1.78 5.15 -17.82 -0.09 1.69 16 7 N -0.88 -23.59 9.35 55.43 0.52 -23.07 16 8 Si 0.90 20.59 29.54 -169.99 -5.02 15.57 16 9 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 10 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 12 C 0.08 1.80 4.26 37.16 0.16 1.96 16 13 O -0.34 -6.51 8.88 -39.26 -0.35 -6.85 16 14 C 0.46 7.57 7.14 36.01 0.26 7.83 16 15 O -0.52 -9.65 15.03 -18.75 -0.28 -9.94 16 16 C -0.12 -1.42 3.62 -90.20 -0.33 -1.75 16 17 H 0.12 1.25 8.14 -51.93 -0.42 0.82 16 18 C 0.06 0.70 7.17 37.93 0.27 0.97 16 19 O -0.37 -3.93 11.13 -35.23 -0.39 -4.32 16 20 C 0.07 0.68 3.25 -25.95 -0.08 0.59 16 21 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 22 C -0.10 -0.81 4.13 -26.73 -0.11 -0.92 16 23 C -0.11 -0.77 5.75 -27.88 -0.16 -0.93 16 24 C 0.48 3.88 8.33 36.01 0.30 4.18 16 25 O -0.52 -5.84 16.74 -18.75 -0.31 -6.16 16 26 O -0.52 -3.16 13.42 -39.24 -0.53 -3.69 16 27 C -0.14 -1.50 6.21 -25.16 -0.16 -1.65 16 28 H 0.02 0.36 7.68 -51.93 -0.40 -0.04 16 29 H 0.08 2.17 6.07 -51.93 -0.32 1.86 16 30 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.08 2.16 6.07 -51.93 -0.32 1.85 16 33 H 0.02 0.36 7.68 -51.93 -0.40 -0.04 16 34 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 35 H 0.06 1.24 8.13 -51.93 -0.42 0.81 16 36 H 0.06 1.24 8.13 -51.93 -0.42 0.82 16 37 H 0.07 0.80 7.86 -51.93 -0.41 0.39 16 38 H 0.11 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.08 0.74 8.10 -51.93 -0.42 0.32 16 40 H 0.09 0.67 8.10 -51.93 -0.42 0.25 16 41 H 0.11 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.11 0.75 8.01 -51.93 -0.42 0.33 16 43 H 0.41 0.86 9.10 45.56 0.41 1.28 16 44 H 0.09 0.77 7.87 -51.93 -0.41 0.36 16 45 H 0.10 1.22 6.50 -51.93 -0.34 0.88 16 LS Contribution 369.45 15.07 5.57 5.57 Total: -1.00 -31.15 369.45 -6.85 -38.00 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -6.35 Total: 0.56 kcal Atomic # 6 Polarization: -5.96 SS G_CDS: 0.29 Total: -5.66 kcal Atomic # 7 Polarization: -23.59 SS G_CDS: 0.52 Total: -23.07 kcal Atomic # 8 Polarization: -29.10 SS G_CDS: -1.86 Total: -30.96 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.15 -6.85 -38.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588754579.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -206.316 kcal (2) G-P(sol) polarization free energy of solvation -31.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -237.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -244.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds