Wall clock time and date at job start Tue Mar 31 2020 10:30:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46623 * 2 1 4 4 C 1.50697 * 109.47239 * 240.00432 * 2 1 3 5 5 H 1.08001 * 119.99890 * 240.00284 * 4 2 1 6 6 C 1.37876 * 120.00428 * 59.99630 * 4 2 1 7 7 N 1.31519 * 119.99563 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00432 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46838 * 89.99826 * 8 6 4 10 10 H 1.48497 * 109.47419 * 209.99978 * 8 6 4 11 11 H 1.48499 * 109.47011 * 330.00539 * 8 6 4 12 12 C 1.52997 * 109.47127 * 119.99936 * 2 1 3 13 13 O 1.45199 * 109.47075 * 300.00189 * 12 2 1 14 14 C 1.34230 * 116.99614 * 179.97438 * 13 12 2 15 15 O 1.20824 * 120.00179 * 0.02562 * 14 13 12 16 16 C 1.50706 * 119.99717 * 179.97438 * 14 13 12 17 17 H 1.09002 * 110.45447 * 57.39893 * 16 14 13 18 18 C 1.54477 * 110.51267 * 294.64781 * 16 14 13 19 19 O 1.44426 * 104.79857 * 217.37762 * 18 16 14 20 20 C 1.44425 * 105.28027 * 40.50932 * 19 18 16 21 21 H 1.09001 * 110.46312 * 78.36722 * 20 19 18 22 22 C 1.53001 * 110.37558 * 200.65521 * 20 19 18 23 23 C 1.53004 * 109.47136 * 290.38490 * 22 20 19 24 24 C 1.50700 * 109.47108 * 179.97438 * 23 22 20 25 25 O 1.20832 * 119.99636 * 359.97438 * 24 23 22 26 26 O 1.34223 * 120.00243 * 179.97438 * 24 23 22 27 27 C 1.54478 * 104.80266 * 319.49135 * 20 19 18 28 28 H 1.08993 * 109.46955 * 300.00075 * 1 2 3 29 29 H 1.09000 * 109.47050 * 59.99904 * 1 2 3 30 30 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46716 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47486 * 299.99829 * 3 2 1 33 33 H 1.09001 * 109.47362 * 60.00551 * 3 2 1 34 34 H 0.97002 * 119.99731 * 180.02562 * 7 6 4 35 35 H 1.09002 * 109.47153 * 180.02562 * 12 2 1 36 36 H 1.09001 * 109.46832 * 60.00321 * 12 2 1 37 37 H 1.08995 * 110.37205 * 336.20366 * 18 16 14 38 38 H 1.08992 * 110.37363 * 98.54655 * 18 16 14 39 39 H 1.09003 * 109.46544 * 50.38118 * 22 20 19 40 40 H 1.08994 * 109.47201 * 170.38171 * 22 20 19 41 41 H 1.08996 * 109.46614 * 299.99753 * 23 22 20 42 42 H 1.08996 * 109.47031 * 59.99334 * 23 22 20 43 43 H 0.96698 * 117.00499 * 179.97438 * 26 24 23 44 44 H 1.09002 * 110.50731 * 265.33302 * 27 20 19 45 45 H 1.08996 * 110.62975 * 142.68113 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2393 -2.4828 7 7 0.9436 0.8303 -2.6034 8 14 2.3226 -1.1193 -4.0080 9 1 1.3450 -2.1614 -4.4124 10 1 2.4873 -0.1400 -5.1121 11 1 3.6310 -1.7564 -3.7120 12 6 2.0401 -0.7212 1.2492 13 8 1.5560 -0.0368 2.4348 14 6 1.9163 -0.5472 3.6228 15 8 2.6134 -1.5329 3.6705 16 6 1.4522 0.1100 4.8972 17 1 0.3637 0.1600 4.9255 18 6 2.0655 1.5213 5.0329 19 8 2.3469 1.6673 6.4419 20 6 2.8665 0.3866 6.8610 21 1 3.9098 0.2826 6.5628 22 6 2.7282 0.2256 8.3762 23 6 3.6950 1.1794 9.0809 24 6 3.5582 1.0212 10.5733 25 8 2.7682 0.2274 11.0268 26 8 4.3140 1.7621 11.3988 27 6 1.9913 -0.6537 6.1274 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 0.7089 1.1615 -3.4844 35 1 3.1301 -0.7208 1.2495 36 1 1.6767 -1.7489 1.2492 37 1 2.9856 1.5925 4.4529 38 1 1.3516 2.2781 4.7081 39 1 1.7059 0.4586 8.6744 40 1 2.9630 -0.8015 8.6554 41 1 4.7171 0.9464 8.7826 42 1 3.4602 2.2065 8.8016 43 1 4.1906 1.6258 12.3481 44 1 1.1694 -0.9790 6.7652 45 1 2.5915 -1.5078 5.8140 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001588754579.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:30:42 Heat of formation + Delta-G solvation = -262.698993 kcal Electronic energy + Delta-G solvation = -26354.170023 eV Core-core repulsion = 22335.454195 eV Total energy + Delta-G solvation = -4018.715828 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.165 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.88160 -41.21641 -40.16214 -38.27658 -37.15138 -36.63550 -34.77174 -33.54513 -33.13889 -30.18375 -27.65679 -27.55934 -27.13732 -25.92300 -24.60331 -22.73406 -21.64093 -21.21582 -20.71250 -19.06587 -19.03713 -17.85751 -17.79914 -17.57261 -17.40055 -17.16298 -16.71260 -16.45619 -16.26497 -15.78632 -15.04067 -14.85101 -14.58054 -14.39089 -14.19747 -14.02008 -13.67105 -13.38637 -13.25017 -13.13396 -12.83728 -12.83328 -12.63775 -12.55851 -12.49491 -12.32540 -12.17800 -12.12071 -12.03469 -11.79223 -11.72518 -11.58935 -11.48817 -11.27747 -11.15854 -10.83978 -10.73036 -10.40056 -8.04555 -6.22398 1.13777 1.24223 1.42854 1.44841 1.53065 1.72544 2.17748 2.44804 2.83543 3.18842 3.30437 3.61013 3.75433 3.82795 3.94934 4.08456 4.19413 4.24277 4.26942 4.29248 4.44354 4.56988 4.62290 4.71210 4.75555 4.76447 4.86778 4.93563 4.97096 5.00895 5.05924 5.20317 5.21463 5.24139 5.37795 5.59340 5.64962 5.65718 5.66691 5.74342 6.09217 6.18728 6.37555 6.71714 6.83280 7.02102 7.45483 8.94798 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.040611 B = 0.002154 C = 0.002134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.311185 B =12993.849474 C =13119.038254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.060 3.940 3 C -0.118 4.118 4 C -0.533 4.533 5 H 0.048 0.952 6 C 0.027 3.973 7 N -0.898 5.898 8 Si 0.951 3.049 9 H -0.278 1.278 10 H -0.282 1.282 11 H -0.274 1.274 12 C 0.096 3.904 13 O -0.348 6.348 14 C 0.460 3.540 15 O -0.540 6.540 16 C -0.114 4.114 17 H 0.140 0.860 18 C 0.064 3.936 19 O -0.369 6.369 20 C 0.076 3.924 21 H 0.082 0.918 22 C -0.096 4.096 23 C -0.112 4.112 24 C 0.484 3.516 25 O -0.555 6.555 26 O -0.516 6.516 27 C -0.143 4.143 28 H 0.034 0.966 29 H 0.062 0.938 30 H 0.018 0.982 31 H 0.020 0.980 32 H 0.062 0.938 33 H 0.035 0.965 34 H 0.262 0.738 35 H 0.050 0.950 36 H 0.048 0.952 37 H 0.060 0.940 38 H 0.123 0.877 39 H 0.076 0.924 40 H 0.090 0.910 41 H 0.126 0.874 42 H 0.120 0.880 43 H 0.426 0.574 44 H 0.104 0.896 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.734 3.285 23.296 23.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.059 3.941 3 C -0.176 4.176 4 C -0.571 4.571 5 H 0.067 0.933 6 C -0.173 4.173 7 N -0.536 5.536 8 Si 0.777 3.223 9 H -0.204 1.204 10 H -0.207 1.207 11 H -0.198 1.198 12 C 0.023 3.977 13 O -0.264 6.264 14 C 0.305 3.695 15 O -0.431 6.431 16 C -0.133 4.133 17 H 0.158 0.842 18 C -0.013 4.013 19 O -0.289 6.289 20 C 0.018 3.982 21 H 0.099 0.901 22 C -0.134 4.134 23 C -0.149 4.149 24 C 0.329 3.671 25 O -0.447 6.447 26 O -0.330 6.330 27 C -0.181 4.181 28 H 0.053 0.947 29 H 0.081 0.919 30 H 0.038 0.962 31 H 0.039 0.961 32 H 0.081 0.919 33 H 0.054 0.946 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.078 0.922 38 H 0.141 0.859 39 H 0.095 0.905 40 H 0.109 0.891 41 H 0.144 0.856 42 H 0.138 0.862 43 H 0.288 0.712 44 H 0.122 0.878 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 3.681 3.163 22.963 23.470 hybrid contribution 0.270 -1.065 -0.735 1.322 sum 3.951 2.098 22.228 22.674 Atomic orbital electron populations 1.21625 0.97080 0.98556 1.00411 1.18281 0.93644 0.93394 0.88753 1.21616 0.97753 0.97793 1.00446 1.21190 1.32271 1.12418 0.91186 0.93337 1.25507 0.95065 0.95588 1.01150 1.69938 1.36707 1.23172 1.23813 0.85666 0.78688 0.78408 0.79496 1.20383 1.20722 1.19837 1.23260 0.97552 0.95168 0.81729 1.86516 1.69137 1.55669 1.15061 1.24052 0.76735 0.82152 0.86589 1.90600 1.37102 1.27154 1.88256 1.22539 1.05110 0.97334 0.88341 0.84176 1.23305 1.00490 0.94367 0.83093 1.89141 1.84341 1.32581 1.22798 1.23102 0.97883 0.82390 0.94779 0.90052 1.21434 1.00548 1.00367 0.91032 1.21413 1.03976 1.04254 0.85263 1.23824 0.75892 0.75918 0.91455 1.90728 1.37531 1.37199 1.79203 1.84515 1.61682 1.62161 1.24612 1.23084 1.01532 0.99230 0.94210 0.94671 0.91885 0.96249 0.96114 0.91918 0.94576 0.92854 0.93181 0.93311 0.92180 0.85881 0.90531 0.89131 0.85606 0.86185 0.71225 0.87758 0.89233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.57 8.11 71.98 0.58 -4.99 16 2 C 0.06 2.85 0.58 -52.93 -0.03 2.82 16 3 C -0.12 -5.49 8.11 71.98 0.58 -4.91 16 4 C -0.53 -28.14 8.01 25.60 0.21 -27.93 16 5 H 0.05 2.57 7.74 -2.91 -0.02 2.55 16 6 C 0.03 1.42 5.15 84.65 0.44 1.86 16 7 N -0.90 -48.21 9.35 21.45 0.20 -48.01 16 8 Si 0.95 42.18 29.54 68.60 2.03 44.21 16 9 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 10 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 11 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 12 C 0.10 4.13 4.26 71.98 0.31 4.43 16 13 O -0.35 -12.78 8.88 -51.42 -0.46 -13.24 16 14 C 0.46 14.62 7.14 71.24 0.51 15.13 16 15 O -0.54 -20.01 15.03 21.97 0.33 -19.68 16 16 C -0.11 -2.49 3.62 -10.52 -0.04 -2.53 16 17 H 0.14 2.53 8.14 -2.39 -0.02 2.51 16 18 C 0.06 1.29 7.17 72.48 0.52 1.81 16 19 O -0.37 -7.04 11.13 -148.98 -1.66 -8.70 16 20 C 0.08 1.25 3.25 31.10 0.10 1.35 16 21 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 22 C -0.10 -1.35 4.13 30.60 0.13 -1.22 16 23 C -0.11 -1.28 5.75 29.85 0.17 -1.11 16 24 C 0.48 7.08 8.33 71.24 0.59 7.68 16 25 O -0.56 -12.01 16.74 21.95 0.37 -11.64 16 26 O -0.52 -5.27 13.42 -51.35 -0.69 -5.96 16 27 C -0.14 -2.70 6.21 31.61 0.20 -2.50 16 28 H 0.03 1.47 7.68 -2.39 -0.02 1.45 16 29 H 0.06 3.23 6.07 -2.39 -0.01 3.21 16 30 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.06 3.20 6.07 -2.39 -0.01 3.18 16 33 H 0.04 1.49 7.68 -2.39 -0.02 1.47 16 34 H 0.26 13.46 8.31 -92.71 -0.77 12.69 16 35 H 0.05 2.18 8.13 -2.39 -0.02 2.16 16 36 H 0.05 2.14 8.13 -2.39 -0.02 2.12 16 37 H 0.06 1.31 7.86 -2.39 -0.02 1.29 16 38 H 0.12 2.12 8.14 -2.39 -0.02 2.10 16 39 H 0.08 1.22 8.10 -2.39 -0.02 1.20 16 40 H 0.09 1.24 8.10 -2.39 -0.02 1.22 16 41 H 0.13 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.12 1.29 8.01 -2.39 -0.02 1.27 16 43 H 0.43 1.03 9.10 -74.06 -0.67 0.35 16 44 H 0.10 1.61 7.87 -2.39 -0.02 1.59 16 45 H 0.09 2.01 6.50 -2.39 -0.02 1.99 16 Total: -1.00 -65.82 369.45 4.70 -61.11 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: 0.32 Total: 12.04 kcal Atomic # 6 Polarization: -14.39 SS G_CDS: 4.26 Total: -10.12 kcal Atomic # 7 Polarization: -48.21 SS G_CDS: 0.20 Total: -48.01 kcal Atomic # 8 Polarization: -57.12 SS G_CDS: -2.11 Total: -59.22 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.21 kcal Total: -65.82 4.70 -61.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588754579.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -201.588 kcal (2) G-P(sol) polarization free energy of solvation -65.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -267.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -262.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds