Wall clock time and date at job start Tue Mar 31 2020 10:30:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.47420 * 2 1 4 4 C 1.50704 * 109.46707 * 240.00174 * 2 1 3 5 5 H 1.07995 * 120.00189 * 239.99706 * 4 2 1 6 6 C 1.37878 * 120.00146 * 60.00041 * 4 2 1 7 7 N 1.31516 * 119.99723 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00472 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.46683 * 359.97438 * 8 6 4 10 10 H 1.48493 * 109.47087 * 119.99845 * 8 6 4 11 11 H 1.48498 * 109.47363 * 240.00222 * 8 6 4 12 12 C 1.52999 * 109.47361 * 120.00562 * 2 1 3 13 13 O 1.45202 * 109.46820 * 299.99546 * 12 2 1 14 14 C 1.34230 * 116.99640 * 179.97438 * 13 12 2 15 15 O 1.20821 * 120.00181 * 0.02562 * 14 13 12 16 16 C 1.50701 * 119.99711 * 180.02562 * 14 13 12 17 17 H 1.09002 * 110.75126 * 59.30018 * 16 14 13 18 18 C 1.54382 * 110.84980 * 295.82631 * 16 14 13 19 19 O 1.43232 * 107.59109 * 220.25337 * 18 16 14 20 20 C 1.43649 * 109.97368 * 358.28680 * 19 18 16 21 21 H 1.09000 * 110.30728 * 265.52013 * 20 19 18 22 22 C 1.52995 * 110.30898 * 143.44138 * 20 19 18 23 23 C 1.52996 * 109.47024 * 66.46077 * 22 20 19 24 24 C 1.50702 * 109.47255 * 179.97438 * 23 22 20 25 25 O 1.20819 * 119.99936 * 359.97438 * 24 23 22 26 26 O 1.34231 * 120.00060 * 179.97438 * 24 23 22 27 27 C 1.55305 * 110.84625 * 182.77427 * 16 14 13 28 28 H 1.08999 * 109.46748 * 299.99242 * 1 2 3 29 29 H 1.08991 * 109.47494 * 59.99494 * 1 2 3 30 30 H 1.09001 * 109.47056 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47752 * 180.02562 * 3 2 1 32 32 H 1.08999 * 109.47514 * 300.00702 * 3 2 1 33 33 H 1.09003 * 109.46750 * 59.99914 * 3 2 1 34 34 H 0.96994 * 120.00049 * 179.97438 * 7 6 4 35 35 H 1.08997 * 109.47323 * 179.97438 * 12 2 1 36 36 H 1.09001 * 109.47425 * 59.99749 * 12 2 1 37 37 H 1.09009 * 109.82643 * 339.76740 * 18 16 14 38 38 H 1.08995 * 109.83122 * 100.73664 * 18 16 14 39 39 H 1.09004 * 109.46635 * 186.45416 * 22 20 19 40 40 H 1.08997 * 109.47601 * 306.45432 * 22 20 19 41 41 H 1.09004 * 109.46875 * 299.99192 * 23 22 20 42 42 H 1.09001 * 109.47918 * 59.99462 * 23 22 20 43 43 H 0.96700 * 116.99545 * 179.97438 * 26 24 23 44 44 H 1.09007 * 111.12701 * 270.44206 * 27 16 14 45 45 H 1.08995 * 111.13053 * 34.60455 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1316 6 6 1.6992 -0.2393 -2.4828 7 7 0.9435 0.8303 -2.6034 8 14 2.3222 -1.1194 -4.0081 9 1 3.1482 -2.2855 -3.6040 10 1 1.1675 -1.5864 -4.8166 11 1 3.1470 -0.1856 -4.8163 12 6 2.0401 -0.7214 1.2491 13 8 1.5562 -0.0369 2.4348 14 6 1.9165 -0.5474 3.6228 15 8 2.6135 -1.5331 3.6704 16 6 1.4516 0.1091 4.8971 17 1 0.3629 0.1307 4.9456 18 6 2.0357 1.5323 5.0269 19 8 2.4067 1.7247 6.3969 20 6 2.0722 0.5574 7.1644 21 1 1.0923 0.6767 7.6266 22 6 3.1357 0.3026 8.2343 23 6 3.1058 1.4347 9.2630 24 6 4.1529 1.1834 10.3172 25 8 4.8512 0.1996 10.2526 26 8 4.3099 2.0527 11.3279 27 6 2.0459 -0.6107 6.1383 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5139 -0.8898 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1301 1.4425 -0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6767 1.9562 0.8900 34 1 0.7094 1.1620 -3.4843 35 1 3.1301 -0.7218 1.2489 36 1 1.6768 -1.7490 1.2491 37 1 2.9138 1.6311 4.3885 38 1 1.2842 2.2679 4.7405 39 1 2.9310 -0.6456 8.7315 40 1 4.1194 0.2626 7.7666 41 1 3.3105 2.3829 8.7658 42 1 2.1221 1.4748 9.7308 43 1 4.9941 1.8487 11.9801 44 1 1.3948 -1.4182 6.4734 45 1 3.0517 -0.9784 5.9352 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001588754580.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:30:45 Heat of formation + Delta-G solvation = -263.890394 kcal Electronic energy + Delta-G solvation = -26342.250223 eV Core-core repulsion = 22323.482732 eV Total energy + Delta-G solvation = -4018.767491 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.165 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.84506 -41.21943 -40.18158 -38.29240 -37.15115 -36.64273 -34.76429 -33.59402 -33.16024 -30.20633 -27.67637 -27.56715 -27.15385 -25.93082 -24.64817 -22.52509 -21.84180 -21.15492 -20.70880 -19.09995 -18.72226 -18.24500 -17.77300 -17.68212 -17.28016 -17.15526 -16.83584 -16.64121 -16.15309 -15.34676 -15.07407 -14.88348 -14.53647 -14.47008 -14.34975 -14.13711 -13.66216 -13.37631 -13.18093 -13.13533 -12.90915 -12.84364 -12.62152 -12.58114 -12.50175 -12.33564 -12.17322 -12.15261 -12.02308 -11.92471 -11.73524 -11.60593 -11.57449 -11.29067 -11.18221 -10.73313 -10.50132 -10.41191 -8.05592 -6.23338 1.12175 1.24778 1.40972 1.44107 1.53365 1.70666 2.19781 2.44038 2.73777 3.17764 3.18639 3.63113 3.75064 3.80786 4.02425 4.08872 4.13283 4.25045 4.26218 4.26785 4.43872 4.58643 4.60910 4.74212 4.75311 4.77914 4.86011 4.87089 5.00704 5.05030 5.09784 5.19614 5.23418 5.26044 5.36635 5.57828 5.64269 5.65621 5.66372 5.95117 6.08577 6.17837 6.36816 6.70286 6.82280 7.02061 7.44565 8.94023 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.035843 B = 0.002181 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.989997 B =12833.827513 C =12980.876552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.060 3.940 3 C -0.119 4.119 4 C -0.533 4.533 5 H 0.047 0.953 6 C 0.027 3.973 7 N -0.898 5.898 8 Si 0.951 3.049 9 H -0.274 1.274 10 H -0.279 1.279 11 H -0.280 1.280 12 C 0.096 3.904 13 O -0.348 6.348 14 C 0.461 3.539 15 O -0.543 6.543 16 C -0.113 4.113 17 H 0.153 0.847 18 C 0.071 3.929 19 O -0.384 6.384 20 C 0.086 3.914 21 H 0.115 0.885 22 C -0.107 4.107 23 C -0.107 4.107 24 C 0.481 3.519 25 O -0.559 6.559 26 O -0.515 6.515 27 C -0.135 4.135 28 H 0.036 0.964 29 H 0.063 0.937 30 H 0.019 0.981 31 H 0.018 0.982 32 H 0.063 0.937 33 H 0.035 0.965 34 H 0.262 0.738 35 H 0.046 0.954 36 H 0.049 0.951 37 H 0.056 0.944 38 H 0.105 0.895 39 H 0.093 0.907 40 H 0.056 0.944 41 H 0.118 0.882 42 H 0.137 0.863 43 H 0.425 0.575 44 H 0.113 0.887 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.072 3.908 24.955 25.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.059 3.941 3 C -0.176 4.176 4 C -0.571 4.571 5 H 0.066 0.934 6 C -0.173 4.173 7 N -0.536 5.536 8 Si 0.778 3.222 9 H -0.199 1.199 10 H -0.205 1.205 11 H -0.206 1.206 12 C 0.023 3.977 13 O -0.264 6.264 14 C 0.305 3.695 15 O -0.433 6.433 16 C -0.132 4.132 17 H 0.171 0.829 18 C -0.006 4.006 19 O -0.304 6.304 20 C 0.029 3.971 21 H 0.132 0.868 22 C -0.144 4.144 23 C -0.144 4.144 24 C 0.326 3.674 25 O -0.451 6.451 26 O -0.329 6.329 27 C -0.172 4.172 28 H 0.055 0.945 29 H 0.081 0.919 30 H 0.039 0.961 31 H 0.037 0.963 32 H 0.082 0.918 33 H 0.054 0.946 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.074 0.926 38 H 0.123 0.877 39 H 0.111 0.889 40 H 0.075 0.925 41 H 0.136 0.864 42 H 0.155 0.845 43 H 0.287 0.713 44 H 0.132 0.868 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.960 3.756 24.560 24.864 hybrid contribution 1.152 -1.149 -1.036 1.929 sum 0.193 2.606 23.523 23.668 Atomic orbital electron populations 1.21614 0.96867 0.98634 1.00473 1.18284 0.93804 0.93298 0.88671 1.21619 0.97657 0.97880 1.00480 1.21219 1.32220 1.12401 0.91228 0.93446 1.25502 0.95039 0.95610 1.01133 1.69937 1.36708 1.23175 1.23786 0.85610 0.78163 0.78642 0.79816 1.19874 1.20499 1.20592 1.23255 0.97418 0.95239 0.81809 1.86515 1.69139 1.55672 1.15064 1.24030 0.76755 0.82170 0.86546 1.90629 1.36961 1.27283 1.88467 1.22755 1.05324 0.96722 0.88440 0.82903 1.22978 1.00069 0.93894 0.83664 1.88411 1.84673 1.38630 1.18673 1.23271 0.99428 0.83021 0.91351 0.86779 1.21549 0.99162 0.98825 0.94897 1.21390 0.98154 1.02185 0.92714 1.23970 0.83026 0.78997 0.81382 1.90734 1.47178 1.30805 1.76341 1.84517 1.59328 1.51869 1.37178 1.23415 1.02913 0.99078 0.91831 0.94550 0.91860 0.96149 0.96312 0.91831 0.94563 0.92822 0.93519 0.93227 0.92565 0.87715 0.88882 0.92496 0.86438 0.84549 0.71315 0.86833 0.91115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.52 8.11 71.98 0.58 -4.94 16 2 C 0.06 2.88 0.58 -52.93 -0.03 2.85 16 3 C -0.12 -5.59 8.11 71.98 0.58 -5.00 16 4 C -0.53 -28.44 8.01 25.60 0.21 -28.23 16 5 H 0.05 2.56 7.74 -2.91 -0.02 2.53 16 6 C 0.03 1.44 5.15 84.65 0.44 1.88 16 7 N -0.90 -48.37 9.35 21.45 0.20 -48.17 16 8 Si 0.95 42.53 29.54 68.60 2.03 44.56 16 9 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 10 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 11 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 12 C 0.10 4.20 4.26 71.98 0.31 4.51 16 13 O -0.35 -12.96 8.88 -51.42 -0.46 -13.42 16 14 C 0.46 14.94 7.13 71.24 0.51 15.44 16 15 O -0.54 -20.94 15.48 21.98 0.34 -20.60 16 16 C -0.11 -2.39 3.49 -10.28 -0.04 -2.42 16 17 H 0.15 2.30 8.14 -2.39 -0.02 2.29 16 18 C 0.07 1.45 7.39 72.45 0.54 1.99 16 19 O -0.38 -7.30 10.69 -148.98 -1.59 -8.90 16 20 C 0.09 1.20 3.44 31.45 0.11 1.31 16 21 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 22 C -0.11 -1.54 4.26 30.59 0.13 -1.41 16 23 C -0.11 -1.17 5.73 29.85 0.17 -1.00 16 24 C 0.48 7.27 8.33 71.24 0.59 7.87 16 25 O -0.56 -12.89 16.74 21.99 0.37 -12.52 16 26 O -0.52 -5.35 13.42 -51.42 -0.69 -6.04 16 27 C -0.13 -2.45 5.71 32.25 0.18 -2.27 16 28 H 0.04 1.51 7.68 -2.39 -0.02 1.49 16 29 H 0.06 3.24 6.07 -2.39 -0.01 3.22 16 30 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.06 3.27 6.07 -2.39 -0.01 3.25 16 33 H 0.04 1.51 7.68 -2.39 -0.02 1.50 16 34 H 0.26 13.47 8.31 -92.71 -0.77 12.70 16 35 H 0.05 2.10 8.13 -2.39 -0.02 2.08 16 36 H 0.05 2.21 8.13 -2.39 -0.02 2.19 16 37 H 0.06 1.38 7.81 -2.38 -0.02 1.37 16 38 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.09 1.24 8.10 -2.39 -0.02 1.22 16 40 H 0.06 1.12 8.10 -2.39 -0.02 1.10 16 41 H 0.12 1.28 7.91 -2.39 -0.02 1.26 16 42 H 0.14 0.69 8.14 -2.39 -0.02 0.67 16 43 H 0.43 1.22 9.10 -74.06 -0.67 0.55 16 44 H 0.11 1.59 8.14 -2.38 -0.02 1.57 16 45 H 0.07 1.68 7.35 -2.39 -0.02 1.67 16 Total: -1.00 -68.88 370.28 4.79 -64.09 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: 0.32 Total: 10.43 kcal Atomic # 6 Polarization: -13.70 SS G_CDS: 4.28 Total: -9.43 kcal Atomic # 7 Polarization: -48.37 SS G_CDS: 0.20 Total: -48.17 kcal Atomic # 8 Polarization: -59.44 SS G_CDS: -2.03 Total: -61.47 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.56 kcal Total: -68.88 4.79 -64.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588754580.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -199.801 kcal (2) G-P(sol) polarization free energy of solvation -68.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -268.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -263.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds