Wall clock time and date at job start Tue Mar 31 2020 10:46:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47449 * 2 1 4 4 N 1.46901 * 109.46843 * 120.00025 * 2 1 3 5 5 C 1.47620 * 111.00033 * 68.93898 * 4 2 1 6 6 C 1.52730 * 87.81421 * 138.08898 * 5 4 2 7 7 C 1.47622 * 110.99775 * 165.09668 * 4 2 1 8 8 C 1.53672 * 115.22916 * 219.25714 * 6 5 4 9 9 C 1.55481 * 101.97371 * 207.00276 * 8 6 5 10 10 H 1.08998 * 111.14353 * 275.53564 * 9 8 6 11 11 N 1.46501 * 111.10635 * 151.44101 * 9 8 6 12 12 C 1.34779 * 120.00246 * 161.88473 * 11 9 8 13 13 O 1.21282 * 119.99492 * 0.02562 * 12 11 9 14 14 C 1.50692 * 120.00367 * 179.97438 * 12 11 9 15 15 S 1.80997 * 109.47323 * 180.02562 * 14 12 11 16 16 C 1.76201 * 100.00242 * 180.02562 * 15 14 12 17 17 H 1.08002 * 119.99766 * 0.02562 * 16 15 14 18 18 C 1.38794 * 120.00227 * 179.97438 * 16 15 14 19 19 N 1.31632 * 119.99942 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99993 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47348 * 90.00688 * 20 18 16 22 22 H 1.48502 * 109.47211 * 210.00488 * 20 18 16 23 23 H 1.48500 * 109.47224 * 330.00331 * 20 18 16 24 24 C 1.55009 * 101.04350 * 33.49906 * 9 8 6 25 25 O 1.42408 * 116.10409 * 90.81417 * 6 5 4 26 26 H 1.08997 * 109.47062 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46860 * 300.00246 * 1 2 3 28 28 H 1.09003 * 109.46713 * 59.99737 * 1 2 3 29 29 H 1.09000 * 109.47305 * 239.99793 * 2 1 3 30 30 H 1.09002 * 109.47768 * 185.22246 * 3 2 1 31 31 H 1.08998 * 109.47130 * 305.22757 * 3 2 1 32 32 H 1.09006 * 109.47305 * 65.22586 * 3 2 1 33 33 H 1.09000 * 113.50542 * 252.83794 * 5 4 2 34 34 H 1.09002 * 113.50752 * 23.33743 * 5 4 2 35 35 H 1.08999 * 113.51158 * 336.59570 * 7 4 2 36 36 H 1.09002 * 113.51200 * 107.09761 * 7 4 2 37 37 H 1.08995 * 110.92855 * 325.17317 * 8 6 5 38 38 H 1.09000 * 110.93090 * 88.83412 * 8 6 5 39 39 H 0.96996 * 120.00163 * 341.89263 * 11 9 8 40 40 H 1.08997 * 109.47723 * 300.00682 * 14 12 11 41 41 H 1.09006 * 109.46824 * 60.00297 * 14 12 11 42 42 H 0.97003 * 119.99956 * 179.97438 * 19 18 16 43 43 H 1.09003 * 110.29849 * 205.04053 * 24 9 8 44 44 H 1.08997 * 110.38700 * 82.93806 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 1.7290 -2.1382 1.1313 6 6 3.1287 -2.3864 1.6897 7 6 3.4516 -1.0269 1.0697 8 6 3.8764 -3.5806 1.0762 9 6 4.8292 -3.9937 2.2333 10 1 5.7420 -3.3981 2.2226 11 7 5.1364 -5.4250 2.1783 12 6 6.2034 -5.9114 2.8428 13 8 6.9089 -5.1640 3.4867 14 6 6.5191 -7.3838 2.7867 15 16 7.9986 -7.7217 3.7731 16 6 8.1332 -9.4625 3.5363 17 1 7.4109 -9.9816 2.9237 18 6 9.1680 -10.1665 4.1363 19 7 10.0486 -9.5338 4.8826 20 14 9.3111 -12.0120 3.8847 21 1 10.1500 -12.2852 2.6901 22 1 9.9387 -12.6276 5.0815 23 1 7.9584 -12.5904 3.6824 24 6 3.9576 -3.6570 3.4702 25 8 3.2323 -2.4682 3.1077 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 3.1261 1.4439 -0.0935 31 1 1.6024 1.9826 -0.8394 32 1 1.7552 1.9286 0.9331 33 1 0.9307 -2.4533 1.8033 34 1 1.5948 -2.5073 0.1145 35 1 3.7912 -1.0913 0.0360 36 1 4.1006 -0.4078 1.6891 37 1 3.1865 -4.3885 0.8327 38 1 4.4423 -3.2752 0.1961 39 1 4.5720 -6.0228 1.6636 40 1 5.6787 -7.9511 3.1867 41 1 6.6966 -7.6781 1.7523 42 1 10.7716 -10.0259 5.3022 43 1 4.5896 -3.4648 4.3372 44 1 3.2659 -4.4727 3.6806 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755060246.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:46:46 Heat of formation + Delta-G solvation = -70.403797 kcal Electronic energy + Delta-G solvation = -23605.920341 eV Core-core repulsion = 20070.588680 eV Total energy + Delta-G solvation = -3535.331660 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.145 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.17995 -40.64823 -38.93069 -35.77590 -34.69618 -34.57666 -32.35754 -30.32413 -28.77307 -28.59851 -27.63622 -26.45957 -25.35982 -23.16548 -21.86726 -21.08819 -20.59651 -19.85774 -18.10592 -17.76406 -17.37492 -16.87217 -16.69049 -16.50667 -16.40975 -15.94670 -15.68770 -15.47171 -15.06788 -14.65617 -14.61348 -14.24224 -13.75090 -13.71202 -13.65695 -13.48095 -13.16002 -13.04365 -12.98508 -12.88864 -12.71449 -12.65479 -12.58628 -11.98172 -11.86427 -11.73860 -11.65404 -11.52441 -11.13685 -11.00414 -10.53602 -10.26484 -10.18076 -9.78303 -8.65986 -8.34096 -6.12027 1.26319 1.43088 1.46877 1.56058 1.57089 2.10308 2.28015 2.59295 3.00247 3.10751 3.26888 3.30996 3.42088 3.54219 3.82789 3.90727 3.96601 4.04178 4.07479 4.24285 4.32226 4.37807 4.44798 4.52501 4.56021 4.57392 4.68214 4.73308 4.76606 4.81435 4.85083 4.90713 4.93990 4.96793 5.04910 5.15506 5.34196 5.37835 5.42814 5.48313 5.98231 6.18041 6.20491 6.45803 7.07446 7.20405 8.74974 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.048915 B = 0.002058 C = 0.002029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.283782 B =13605.327293 C =13796.567222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.037 3.963 3 C -0.141 4.141 4 N -0.482 5.482 5 C 0.003 3.997 6 C 0.077 3.923 7 C -0.003 4.003 8 C -0.129 4.129 9 C 0.117 3.883 10 H 0.085 0.915 11 N -0.699 5.699 12 C 0.536 3.464 13 O -0.561 6.561 14 C -0.129 4.129 15 S -0.153 6.153 16 C -0.545 4.545 17 H 0.084 0.916 18 C 0.012 3.988 19 N -0.912 5.912 20 Si 0.998 3.002 21 H -0.268 1.268 22 H -0.279 1.279 23 H -0.257 1.257 24 C 0.040 3.960 25 O -0.360 6.360 26 H 0.057 0.943 27 H 0.050 0.950 28 H 0.073 0.927 29 H 0.060 0.940 30 H 0.051 0.949 31 H 0.073 0.927 32 H 0.050 0.950 33 H 0.083 0.917 34 H 0.105 0.895 35 H 0.102 0.898 36 H 0.076 0.924 37 H 0.115 0.885 38 H 0.112 0.888 39 H 0.421 0.579 40 H 0.112 0.888 41 H 0.114 0.886 42 H 0.271 0.729 43 H 0.071 0.929 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.995 14.918 -15.488 30.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.072 4.072 3 C -0.198 4.198 4 N -0.205 5.205 5 C -0.125 4.125 6 C 0.036 3.964 7 C -0.132 4.132 8 C -0.167 4.167 9 C 0.011 3.989 10 H 0.103 0.897 11 N -0.355 5.355 12 C 0.322 3.678 13 O -0.439 6.439 14 C -0.280 4.280 15 S 0.074 5.926 16 C -0.693 4.693 17 H 0.103 0.897 18 C -0.193 4.193 19 N -0.548 5.548 20 Si 0.820 3.180 21 H -0.193 1.193 22 H -0.205 1.205 23 H -0.181 1.181 24 C -0.038 4.038 25 O -0.278 6.278 26 H 0.076 0.924 27 H 0.069 0.931 28 H 0.092 0.908 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.092 0.908 32 H 0.069 0.931 33 H 0.102 0.898 34 H 0.122 0.878 35 H 0.120 0.880 36 H 0.094 0.906 37 H 0.133 0.867 38 H 0.130 0.870 39 H 0.259 0.741 40 H 0.130 0.870 41 H 0.132 0.868 42 H 0.080 0.920 43 H 0.090 0.910 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -20.059 16.769 -13.645 29.491 hybrid contribution -0.151 -2.393 -1.219 2.690 sum -20.209 14.376 -14.864 28.914 Atomic orbital electron populations 1.21777 0.93563 1.02196 1.02309 1.22323 0.96821 0.96323 0.91733 1.21754 1.00861 0.95013 1.02213 1.69085 1.05666 1.10005 1.35766 1.24184 0.97011 0.89589 1.01742 1.22670 0.96843 0.95183 0.81735 1.24283 0.92481 0.95244 1.01194 1.23203 0.97762 0.98120 0.97653 1.22548 0.98664 0.82099 0.95553 0.89710 1.45536 1.29005 1.08676 1.52258 1.20130 0.80155 0.89397 0.78071 1.90715 1.50556 1.60247 1.42380 1.23367 1.03410 0.95384 1.05868 1.85623 1.31905 1.10056 1.65046 1.23207 1.16508 0.92818 1.36752 0.89749 1.26133 0.94182 1.05022 0.93925 1.70187 1.14825 1.38548 1.31243 0.84954 0.79078 0.75960 0.77990 1.19322 1.20473 1.18112 1.23858 0.94056 0.87895 0.98021 1.88398 1.75451 1.43194 1.20718 0.92433 0.93065 0.90835 0.92188 0.92959 0.90810 0.93118 0.89833 0.87757 0.88016 0.90596 0.86713 0.86956 0.74051 0.86970 0.86828 0.92043 0.91037 0.90546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 9.23 71.98 0.66 -0.86 16 2 C 0.04 0.44 2.26 44.92 0.10 0.55 16 3 C -0.14 -1.70 9.25 71.98 0.67 -1.03 16 4 N -0.48 -7.95 6.13 -902.38 -5.53 -13.48 16 5 C 0.00 0.05 6.28 83.74 0.53 0.57 16 6 C 0.08 1.26 1.74 -10.70 -0.02 1.24 16 7 C 0.00 -0.05 6.63 83.79 0.56 0.51 16 8 C -0.13 -1.58 6.03 31.67 0.19 -1.39 16 9 C 0.12 2.46 3.37 46.53 0.16 2.61 16 10 H 0.08 2.20 7.74 -2.39 -0.02 2.18 16 11 N -0.70 -15.45 5.24 -435.27 -2.28 -17.73 16 12 C 0.54 18.46 7.85 87.65 0.69 19.14 16 13 O -0.56 -25.02 15.61 -3.03 -0.05 -25.07 16 14 C -0.13 -4.81 6.16 71.23 0.44 -4.37 16 15 S -0.15 -8.34 20.57 -56.49 -1.16 -9.50 16 16 C -0.55 -30.53 9.50 67.95 0.65 -29.89 16 17 H 0.08 4.35 7.80 -2.91 -0.02 4.33 16 18 C 0.01 0.68 5.49 84.86 0.47 1.15 16 19 N -0.91 -55.63 13.22 21.65 0.29 -55.34 16 20 Si 1.00 43.00 29.55 68.60 2.03 45.03 16 21 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 22 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 23 H -0.26 -10.34 7.11 99.48 0.71 -9.64 16 24 C 0.04 0.93 7.49 72.67 0.54 1.48 16 25 O -0.36 -8.69 11.17 -148.98 -1.66 -10.36 16 26 H 0.06 0.58 7.48 -2.39 -0.02 0.56 16 27 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 28 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.06 0.58 7.57 -2.39 -0.02 0.56 16 30 H 0.05 0.64 7.83 -2.39 -0.02 0.62 16 31 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 33 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.10 0.85 7.77 -2.39 -0.02 0.83 16 35 H 0.10 1.07 7.49 -2.39 -0.02 1.05 16 36 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.11 0.86 7.96 -2.39 -0.02 0.84 16 38 H 0.11 1.00 7.81 -2.39 -0.02 0.98 16 39 H 0.42 5.97 8.51 -92.71 -0.79 5.18 16 40 H 0.11 3.72 8.14 -2.40 -0.02 3.70 16 41 H 0.11 3.73 8.14 -2.39 -0.02 3.71 16 42 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 43 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 44 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -77.23 371.80 -2.55 -79.78 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: 0.20 Total: 16.96 kcal Atomic # 6 Polarization: -15.92 SS G_CDS: 5.62 Total: -10.29 kcal Atomic # 7 Polarization: -79.02 SS G_CDS: -7.52 Total: -86.55 kcal Atomic # 8 Polarization: -33.71 SS G_CDS: -1.71 Total: -35.42 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Atomic # 16 Polarization: -8.34 SS G_CDS: -1.16 Total: -9.50 kcal Total: -77.23 -2.55 -79.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755060246.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.378 kcal (2) G-P(sol) polarization free energy of solvation -77.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds