Wall clock time and date at job start Tue Mar 31 2020 10:33:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47485 * 2 1 4 4 C 1.50701 * 109.47360 * 179.97438 * 3 2 1 5 5 O 1.21282 * 119.99862 * 359.97438 * 4 3 2 6 6 N 1.34771 * 119.99769 * 179.97438 * 4 3 2 7 7 C 1.46499 * 119.99903 * 180.02562 * 6 4 3 8 8 C 1.53787 * 113.61622 * 205.00326 * 7 6 4 9 9 C 1.53784 * 87.07923 * 270.88175 * 8 7 6 10 10 N 1.46497 * 113.61569 * 220.01663 * 9 8 7 11 11 C 1.46504 * 119.99664 * 59.99609 * 10 9 8 12 12 C 1.34775 * 120.00541 * 240.00166 * 10 9 8 13 13 O 1.21286 * 119.99421 * 0.02562 * 12 10 9 14 14 C 1.50693 * 120.00550 * 179.97438 * 12 10 9 15 15 S 1.80995 * 109.47365 * 180.02562 * 14 12 10 16 16 C 1.76201 * 100.00196 * 180.02562 * 15 14 12 17 17 H 1.08003 * 119.99854 * 359.97438 * 16 15 14 18 18 C 1.38799 * 120.00108 * 180.02562 * 16 15 14 19 19 N 1.31628 * 119.99970 * 179.97438 * 18 16 15 20 20 Si 1.86797 * 119.99919 * 359.97438 * 18 16 15 21 21 H 1.48497 * 109.47237 * 90.00459 * 20 18 16 22 22 H 1.48500 * 109.47092 * 210.00291 * 20 18 16 23 23 H 1.48495 * 109.47311 * 329.99966 * 20 18 16 24 24 C 1.53779 * 87.08045 * 334.56667 * 9 8 7 25 25 H 1.08996 * 109.46903 * 300.00494 * 1 2 3 26 26 H 1.09002 * 109.46819 * 60.00596 * 1 2 3 27 27 H 1.08996 * 109.47251 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47300 * 239.99382 * 2 1 3 29 29 H 1.09005 * 109.47269 * 119.99624 * 2 1 3 30 30 H 1.08997 * 109.46948 * 59.99266 * 3 2 1 31 31 H 1.09002 * 109.46605 * 299.99535 * 3 2 1 32 32 H 0.97001 * 120.00748 * 359.97438 * 6 4 3 33 33 H 1.08997 * 112.90637 * 336.24925 * 7 6 4 34 34 H 1.09004 * 113.61202 * 25.42927 * 8 7 6 35 35 H 1.08994 * 113.61447 * 156.33359 * 8 7 6 36 36 H 1.09002 * 113.61478 * 89.11632 * 9 8 7 37 37 H 1.09004 * 109.46666 * 90.00333 * 11 10 9 38 38 H 1.08999 * 109.47266 * 210.00024 * 11 10 9 39 39 H 1.08995 * 109.47412 * 330.00610 * 11 10 9 40 40 H 1.08999 * 109.46992 * 300.00301 * 14 12 10 41 41 H 1.08999 * 109.47187 * 59.99659 * 14 12 10 42 42 H 0.97001 * 119.99988 * 179.97438 * 19 18 16 43 43 H 1.09006 * 113.61307 * 270.88660 * 24 9 8 44 44 H 1.09007 * 113.61642 * 139.98417 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5471 1.4424 0.0006 5 8 4.1535 0.3921 0.0015 6 7 4.2209 2.6096 0.0002 7 6 5.6859 2.6096 0.0003 8 6 6.3020 3.8868 0.5954 9 6 6.2490 4.4789 -0.8229 10 7 7.4300 5.2721 -1.1722 11 6 8.7568 4.6509 -1.1690 12 6 7.2961 6.5734 -1.4965 13 8 6.1977 7.0878 -1.4986 14 6 8.5110 7.3896 -1.8553 15 16 8.0073 9.0854 -2.2377 16 6 9.5767 9.7939 -2.6116 17 1 10.4690 9.1875 -2.5602 18 6 9.6664 11.1314 -2.9713 19 7 10.8389 11.6607 -3.2502 20 14 8.1233 12.1803 -3.0596 21 1 7.8760 12.8094 -1.7374 22 1 8.3023 13.2389 -4.0856 23 1 6.9648 11.3267 -3.4261 24 6 6.3021 3.0329 -1.3436 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8901 30 1 1.6767 1.9563 0.8899 31 1 1.6768 1.9562 -0.8901 32 1 3.7360 3.4497 -0.0009 33 1 6.1102 1.6908 0.4050 34 1 5.6504 4.3959 1.3057 35 1 7.3150 3.7480 0.9730 36 1 5.3129 4.9900 -1.0480 37 1 8.9672 4.2385 -2.1558 38 1 9.5083 5.4003 -0.9206 39 1 8.7820 3.8516 -0.4283 40 1 9.2045 7.3977 -1.0144 41 1 8.9999 6.9504 -2.7249 42 1 10.9015 12.5954 -3.5019 43 1 7.3152 2.6606 -1.4960 44 1 5.6506 2.8525 -2.1988 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001756733097.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:33:34 Heat of formation + Delta-G solvation = -62.152318 kcal Electronic energy + Delta-G solvation = -23299.393590 eV Core-core repulsion = 19764.419741 eV Total energy + Delta-G solvation = -3534.973849 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.145 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.87449 -39.64557 -38.13619 -35.02548 -34.68578 -33.04632 -32.45907 -29.49040 -28.35174 -27.16377 -26.05170 -25.65528 -24.38989 -22.42226 -20.76442 -20.21249 -19.01238 -17.77717 -17.54092 -16.91714 -16.29962 -16.21804 -16.05088 -15.61671 -15.00158 -14.74064 -14.54794 -14.04193 -13.89207 -13.53142 -13.45266 -13.28110 -12.92634 -12.81284 -12.76644 -12.41918 -12.32290 -12.29554 -12.06896 -11.98796 -11.57603 -11.28307 -11.14323 -11.11305 -11.02545 -10.81708 -10.55222 -10.15741 -9.87595 -9.52954 -9.38564 -9.02482 -8.62802 -8.51842 -6.94564 -6.30913 -4.02930 2.29576 2.67503 2.76983 2.85611 3.16711 3.31165 3.48328 3.56814 4.11225 4.27169 4.30979 4.35672 4.47998 4.55379 4.60018 4.64482 4.74822 4.95633 5.00357 5.08101 5.08776 5.14319 5.21056 5.26250 5.32553 5.35535 5.36429 5.50993 5.55842 5.64749 5.65474 5.67657 5.74707 5.74950 5.82452 5.92143 5.98046 6.22395 6.53215 7.13544 7.39438 7.88671 7.92044 8.37600 8.39456 9.15212 10.78264 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.028962 B = 0.002227 C = 0.002100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.541697 B =12568.938976 C =13330.687982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.109 4.109 3 C -0.142 4.142 4 C 0.515 3.485 5 O -0.541 6.541 6 N -0.715 5.715 7 C 0.123 3.877 8 C -0.159 4.159 9 C 0.126 3.874 10 N -0.612 5.612 11 C 0.076 3.924 12 C 0.533 3.467 13 O -0.520 6.520 14 C -0.121 4.121 15 S -0.144 6.144 16 C -0.521 4.521 17 H 0.088 0.912 18 C 0.096 3.904 19 N -0.880 5.880 20 Si 0.857 3.143 21 H -0.267 1.267 22 H -0.274 1.274 23 H -0.236 1.236 24 C -0.161 4.161 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.057 0.943 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.404 0.596 33 H 0.107 0.893 34 H 0.079 0.921 35 H 0.099 0.901 36 H 0.118 0.882 37 H 0.057 0.943 38 H 0.078 0.922 39 H 0.070 0.930 40 H 0.097 0.903 41 H 0.097 0.903 42 H 0.271 0.729 43 H 0.097 0.903 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.272 -22.212 7.808 27.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.147 4.147 3 C -0.182 4.182 4 C 0.302 3.698 5 O -0.417 6.417 6 N -0.367 5.367 7 C 0.017 3.983 8 C -0.198 4.198 9 C 0.021 3.979 10 N -0.346 5.346 11 C -0.067 4.067 12 C 0.321 3.679 13 O -0.394 6.394 14 C -0.272 4.272 15 S 0.082 5.918 16 C -0.669 4.669 17 H 0.106 0.894 18 C -0.113 4.113 19 N -0.516 5.516 20 Si 0.682 3.318 21 H -0.192 1.192 22 H -0.199 1.199 23 H -0.160 1.160 24 C -0.200 4.200 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.112 0.888 31 H 0.113 0.887 32 H 0.238 0.762 33 H 0.125 0.875 34 H 0.097 0.903 35 H 0.117 0.883 36 H 0.136 0.864 37 H 0.076 0.924 38 H 0.097 0.903 39 H 0.089 0.911 40 H 0.115 0.885 41 H 0.115 0.885 42 H 0.081 0.919 43 H 0.115 0.885 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -15.340 -22.040 7.742 27.947 hybrid contribution 0.830 0.547 -0.130 1.003 sum -14.510 -21.493 7.612 27.026 Atomic orbital electron populations 1.21799 0.95401 1.02029 1.01877 1.21280 0.95337 0.94565 1.03558 1.21748 0.91448 1.00398 1.04642 1.20821 0.90420 0.83426 0.75116 1.90704 1.70562 1.31289 1.49166 1.45787 1.06406 1.09005 1.75481 1.21660 0.80178 0.99528 0.96964 1.23848 1.02375 0.95658 0.97924 1.22588 0.90633 0.90340 0.94314 1.47780 1.07397 1.09872 1.69581 1.21792 0.83802 0.99234 1.01910 1.20357 0.90765 0.81176 0.75617 1.90676 1.27500 1.70147 1.51122 1.23321 0.98542 1.00496 1.04826 1.84775 1.15220 1.02151 1.89622 1.22305 0.91784 0.99060 1.53725 0.89393 1.24713 0.96428 0.96858 0.93306 1.69938 1.23334 1.14051 1.44304 0.86731 0.84469 0.81504 0.79121 1.19215 1.19936 1.15953 1.23910 1.02385 0.95602 0.98125 0.92647 0.92597 0.92371 0.91227 0.91264 0.88766 0.88697 0.76162 0.87460 0.90277 0.88250 0.86415 0.92413 0.90349 0.91091 0.88493 0.88473 0.91933 0.88470 0.90535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 9.91 37.16 0.37 -0.39 16 2 C -0.11 -0.73 5.22 -26.73 -0.14 -0.87 16 3 C -0.14 -0.84 5.70 -27.88 -0.16 -0.99 16 4 C 0.52 4.61 7.83 -10.99 -0.09 4.52 16 5 O -0.54 -6.94 15.58 5.56 0.09 -6.85 16 6 N -0.72 -5.42 5.26 -53.02 -0.28 -5.70 16 7 C 0.12 1.02 4.32 -67.12 -0.29 0.73 16 8 C -0.16 -1.31 7.36 -25.91 -0.19 -1.50 16 9 C 0.13 1.33 4.08 -67.12 -0.27 1.05 16 10 N -0.61 -7.77 3.08 -173.00 -0.53 -8.30 16 11 C 0.08 0.71 8.84 59.85 0.53 1.24 16 12 C 0.53 9.34 7.69 -10.99 -0.08 9.25 16 13 O -0.52 -10.87 15.35 5.55 0.09 -10.79 16 14 C -0.12 -2.32 4.71 36.00 0.17 -2.15 16 15 S -0.14 -3.62 18.55 -107.50 -1.99 -5.61 16 16 C -0.52 -14.89 10.04 30.94 0.31 -14.57 16 17 H 0.09 2.61 8.03 -52.48 -0.42 2.19 16 18 C 0.10 2.78 5.50 -17.43 -0.10 2.68 16 19 N -0.88 -26.35 13.97 55.49 0.78 -25.58 16 20 Si 0.86 21.62 27.74 -169.99 -4.71 16.91 16 21 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.24 -5.93 6.74 56.52 0.38 -5.55 16 24 C -0.16 -1.41 7.30 -25.92 -0.19 -1.60 16 25 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 26 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 27 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 28 H 0.07 0.54 8.10 -51.93 -0.42 0.12 16 29 H 0.07 0.52 8.10 -51.93 -0.42 0.10 16 30 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.40 2.31 8.70 -40.82 -0.36 1.96 16 33 H 0.11 0.99 7.47 -51.93 -0.39 0.60 16 34 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.10 0.75 6.92 -51.93 -0.36 0.39 16 36 H 0.12 1.41 7.24 -51.93 -0.38 1.04 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.08 0.76 6.44 -51.93 -0.33 0.42 16 39 H 0.07 0.49 6.34 -51.93 -0.33 0.16 16 40 H 0.10 1.72 7.40 -51.92 -0.38 1.33 16 41 H 0.10 1.75 8.11 -51.92 -0.42 1.32 16 42 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 43 H 0.10 0.77 6.72 -51.93 -0.35 0.42 16 44 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 LS Contribution 372.01 15.07 5.61 5.61 Total: -1.00 -35.42 372.01 -8.20 -43.62 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -7.10 Total: -0.70 kcal Atomic # 6 Polarization: -2.47 SS G_CDS: -0.13 Total: -2.60 kcal Atomic # 7 Polarization: -39.54 SS G_CDS: -0.04 Total: -39.58 kcal Atomic # 8 Polarization: -17.81 SS G_CDS: 0.17 Total: -17.64 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.71 Total: 16.91 kcal Atomic # 16 Polarization: -3.62 SS G_CDS: -1.99 Total: -5.61 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -35.42 -8.20 -43.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001756733097.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.533 kcal (2) G-P(sol) polarization free energy of solvation -35.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds