Wall clock time and date at job start Tue Mar 31 2020 11:15:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86796 * 120.00412 * 2 1 4 4 H 1.48499 * 109.47547 * 270.00506 * 3 2 1 5 5 H 1.48501 * 109.46730 * 30.00362 * 3 2 1 6 6 H 1.48503 * 109.47111 * 150.00238 * 3 2 1 7 7 C 1.38816 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00464 * 163.12519 * 7 2 1 9 9 N 1.36938 * 119.99827 * 343.12257 * 7 2 1 10 10 C 1.46499 * 120.00001 * 316.98862 * 9 7 2 11 11 C 1.53003 * 109.47123 * 269.99867 * 10 9 7 12 12 C 1.50702 * 109.47171 * 180.02562 * 11 10 9 13 13 O 1.21293 * 119.99749 * 5.17236 * 12 11 10 14 14 N 1.34773 * 119.99977 * 185.17884 * 12 11 10 15 15 C 1.46933 * 120.55589 * 354.56553 * 14 12 11 16 16 C 1.53431 * 107.78247 * 224.68831 * 15 14 12 17 17 C 1.52839 * 108.87086 * 296.78253 * 16 15 14 18 18 C 1.50589 * 110.50480 * 51.39926 * 17 16 15 19 19 C 1.38513 * 118.93227 * 159.51187 * 18 17 16 20 20 C 1.38127 * 120.30081 * 179.62068 * 19 18 17 21 21 C 1.38305 * 120.15386 * 0.24448 * 20 19 18 22 22 C 1.38031 * 119.90917 * 359.56455 * 21 20 19 23 23 C 1.38569 * 121.50293 * 339.26961 * 18 17 16 24 24 C 1.46498 * 119.99984 * 136.98606 * 9 7 2 25 25 C 1.52998 * 117.49958 * 12.67333 * 24 9 7 26 26 C 1.53002 * 60.00214 * 252.50660 * 25 24 9 27 27 H 0.97004 * 119.99743 * 5.02724 * 1 2 3 28 28 H 1.09009 * 109.47248 * 150.00101 * 10 9 7 29 29 H 1.08995 * 109.47493 * 30.00124 * 10 9 7 30 30 H 1.08995 * 109.46766 * 60.00154 * 11 10 9 31 31 H 1.08997 * 109.46763 * 299.99799 * 11 10 9 32 32 H 1.09000 * 109.79640 * 344.25715 * 15 14 12 33 33 H 1.08993 * 109.79462 * 105.05889 * 15 14 12 34 34 H 1.09002 * 109.57261 * 56.60358 * 16 15 14 35 35 H 1.09008 * 109.56998 * 176.84255 * 16 15 14 36 36 H 1.08999 * 109.27286 * 291.13933 * 17 16 15 37 37 H 1.08998 * 109.26951 * 171.65943 * 17 16 15 38 38 H 1.07997 * 119.84941 * 359.60095 * 19 18 17 39 39 H 1.08003 * 119.91976 * 179.97438 * 20 19 18 40 40 H 1.08004 * 120.04151 * 179.79889 * 21 20 19 41 41 H 1.07993 * 119.98424 * 180.24336 * 22 21 20 42 42 H 1.09002 * 115.54894 * 158.38199 * 24 9 7 43 43 H 1.08999 * 117.49898 * 0.02562 * 25 24 9 44 44 H 1.09004 * 117.50065 * 145.01621 * 25 24 9 45 45 H 1.08994 * 117.50199 * 252.51103 * 26 25 24 46 46 H 1.08998 * 117.51678 * 107.47545 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4478 2.6525 0.7001 6 1 3.5479 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0553 -1.2223 -0.2720 9 7 1.3697 -2.3627 0.3433 10 6 0.4586 -2.3844 1.4903 11 6 1.2404 -2.7419 2.7559 12 6 0.3030 -2.7648 3.9357 13 8 -0.8883 -2.6122 3.7668 14 7 0.7886 -2.9547 5.1786 15 6 2.2110 -3.2586 5.3864 16 6 2.3017 -4.4030 6.4045 17 6 1.7238 -3.9264 7.7367 18 6 0.3573 -3.3268 7.5346 19 6 -0.5000 -3.2324 8.6184 20 6 -1.7570 -2.6801 8.4667 21 6 -2.1697 -2.2220 7.2287 22 6 -1.3200 -2.3088 6.1444 23 6 -0.0551 -2.8660 6.2945 24 6 1.5955 -3.5825 -0.4360 25 6 2.7642 -3.5838 -1.4234 26 6 1.3258 -3.5197 -1.9408 27 1 -0.4850 0.8369 -0.0736 28 1 -0.3200 -3.1285 1.3218 29 1 0.0022 -1.4019 1.6104 30 1 2.0189 -1.9978 2.9243 31 1 1.6966 -3.7244 2.6357 32 1 2.6644 -3.5661 4.4441 33 1 2.7240 -2.3780 5.7729 34 1 1.7307 -5.2586 6.0439 35 1 3.3446 -4.6905 6.5387 36 1 2.3858 -3.1755 8.1680 37 1 1.6478 -4.7729 8.4192 38 1 -0.1844 -3.5925 9.5864 39 1 -2.4206 -2.6099 9.3159 40 1 -3.1541 -1.7935 7.1115 41 1 -1.6396 -1.9478 5.1780 42 1 1.3689 -4.5170 0.0774 43 1 3.3654 -2.6773 -1.4929 44 1 3.3069 -4.5193 -1.5597 45 1 0.9221 -4.4129 -2.4174 46 1 0.9799 -2.5709 -2.3508 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000284947310.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:08 Heat of formation + Delta-G solvation = 46.114574 kcal Electronic energy + Delta-G solvation = -26404.919840 eV Core-core repulsion = 22875.029939 eV Total energy + Delta-G solvation = -3529.889902 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.93651 -38.49140 -36.94084 -36.43177 -33.73643 -33.45979 -31.76120 -30.48979 -30.06630 -28.58872 -25.80667 -24.79707 -23.38395 -23.06648 -21.94392 -21.30718 -20.27881 -19.72591 -18.85207 -17.19801 -16.79294 -16.07653 -15.98083 -15.61803 -15.26239 -14.93786 -14.57577 -14.37093 -13.98257 -13.87382 -13.37817 -13.28013 -13.26505 -12.95467 -12.58372 -12.42093 -12.06771 -11.97928 -11.52406 -11.44298 -11.35156 -11.22358 -10.97415 -10.80527 -10.76254 -10.71582 -10.24434 -10.13790 -10.00377 -9.71891 -9.56328 -9.28217 -9.06035 -8.61193 -8.50778 -7.72229 -6.41251 -5.84815 -3.50065 1.39122 1.51847 2.93393 2.95949 3.30731 3.38972 3.39801 3.91282 4.37733 4.50028 4.65021 4.75478 4.86076 4.98230 5.00311 5.18471 5.21012 5.26243 5.30503 5.44168 5.46212 5.49989 5.57015 5.69609 5.74291 5.84969 5.89922 5.94948 5.97020 6.00745 6.20595 6.21468 6.29320 6.36634 6.49184 6.51509 6.56586 6.67813 6.69370 6.73486 7.00035 7.06835 7.27953 7.28992 7.49747 7.67743 7.81825 8.39069 8.53137 9.14350 9.73230 10.34466 11.15584 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.015245 B = 0.003732 C = 0.003466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.174195 B = 7500.452156 C = 8075.571707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.024 3.976 3 Si 0.896 3.104 4 H -0.284 1.284 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.275 4.275 8 H 0.062 0.938 9 N -0.549 5.549 10 C 0.169 3.831 11 C -0.154 4.154 12 C 0.518 3.482 13 O -0.511 6.511 14 N -0.563 5.563 15 C 0.101 3.899 16 C -0.135 4.135 17 C -0.075 4.075 18 C -0.127 4.127 19 C -0.103 4.103 20 C -0.150 4.150 21 C -0.103 4.103 22 C -0.153 4.153 23 C 0.166 3.834 24 C 0.122 3.878 25 C -0.203 4.203 26 C -0.218 4.218 27 H 0.258 0.742 28 H 0.036 0.964 29 H 0.099 0.901 30 H 0.093 0.907 31 H 0.080 0.920 32 H 0.099 0.901 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.084 0.916 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.119 0.881 39 H 0.117 0.883 40 H 0.122 0.878 41 H 0.170 0.830 42 H 0.087 0.913 43 H 0.094 0.906 44 H 0.071 0.929 45 H 0.068 0.932 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.469 -8.289 15.424 17.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.178 4.178 3 Si 0.724 3.276 4 H -0.210 1.210 5 H -0.214 1.214 6 H -0.201 1.201 7 C -0.404 4.404 8 H 0.080 0.920 9 N -0.265 5.265 10 C 0.042 3.958 11 C -0.196 4.196 12 C 0.310 3.690 13 O -0.386 6.386 14 N -0.287 5.287 15 C -0.021 4.021 16 C -0.173 4.173 17 C -0.112 4.112 18 C -0.130 4.130 19 C -0.122 4.122 20 C -0.169 4.169 21 C -0.122 4.122 22 C -0.173 4.173 23 C 0.071 3.929 24 C 0.013 3.987 25 C -0.241 4.241 26 C -0.258 4.258 27 H 0.069 0.931 28 H 0.055 0.945 29 H 0.116 0.884 30 H 0.111 0.889 31 H 0.098 0.902 32 H 0.117 0.883 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.102 0.898 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.137 0.863 39 H 0.135 0.865 40 H 0.140 0.860 41 H 0.186 0.814 42 H 0.105 0.895 43 H 0.113 0.887 44 H 0.090 0.910 45 H 0.086 0.914 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 2.737 -8.033 15.293 17.490 hybrid contribution 0.508 0.888 -0.006 1.023 sum 3.246 -7.145 15.288 17.184 Atomic orbital electron populations 1.69909 1.05603 1.26290 1.50182 1.25436 0.95113 0.98841 0.98425 0.86422 0.79491 0.83638 0.78004 1.21011 1.21378 1.20090 1.18915 0.92572 0.83977 1.44958 0.92020 1.43346 1.51195 1.05051 1.26939 1.20649 0.89817 1.03181 0.82131 1.22574 0.99636 1.03003 0.94409 1.21585 0.89852 0.74356 0.83226 1.90481 1.16678 1.47117 1.84314 1.46056 1.09396 1.68060 1.05211 1.21985 0.80522 0.98491 1.01092 1.21869 1.02047 0.98230 0.95174 1.20359 0.92962 1.00213 0.97631 1.19440 0.97485 1.03552 0.92519 1.20784 0.93831 1.00078 0.97457 1.21003 0.96547 1.01870 0.97503 1.21113 0.99501 0.99135 0.92425 1.22320 0.92890 0.99812 1.02243 1.17808 0.91343 0.97245 0.86492 1.21220 0.99509 0.90924 0.87026 1.23064 0.91877 1.01315 1.07887 1.23267 0.98618 1.01514 1.02445 0.93138 0.94525 0.88368 0.88867 0.90171 0.88307 0.90676 0.90981 0.89770 0.90708 0.90555 0.86292 0.86538 0.86045 0.81369 0.89518 0.88732 0.91019 0.91360 0.88887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.11 11.58 55.49 0.64 -24.47 16 2 C 0.02 0.65 5.02 -17.43 -0.09 0.56 16 3 Si 0.90 20.99 29.59 -169.99 -5.03 15.96 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.27 -7.14 8.44 -15.06 -0.13 -7.27 16 8 H 0.06 1.60 6.61 -52.49 -0.35 1.26 16 9 N -0.55 -13.19 2.74 -165.66 -0.45 -13.64 16 10 C 0.17 3.91 4.63 -4.04 -0.02 3.89 16 11 C -0.15 -2.83 4.43 -27.88 -0.12 -2.95 16 12 C 0.52 9.51 7.56 -10.99 -0.08 9.43 16 13 O -0.51 -10.90 12.64 5.55 0.07 -10.83 16 14 N -0.56 -8.65 2.97 -112.85 -0.34 -8.99 16 15 C 0.10 1.15 6.17 -3.58 -0.02 1.13 16 16 C -0.14 -1.24 6.11 -26.59 -0.16 -1.40 16 17 C -0.07 -0.70 5.78 -28.02 -0.16 -0.87 16 18 C -0.13 -1.62 5.76 -104.45 -0.60 -2.22 16 19 C -0.10 -1.19 9.66 -39.52 -0.38 -1.57 16 20 C -0.15 -1.79 10.04 -39.60 -0.40 -2.19 16 21 C -0.10 -1.42 10.05 -39.63 -0.40 -1.82 16 22 C -0.15 -2.53 8.88 -39.36 -0.35 -2.88 16 23 C 0.17 2.58 6.31 -83.62 -0.53 2.05 16 24 C 0.12 2.58 6.60 -67.93 -0.45 2.13 16 25 C -0.20 -3.92 9.85 -26.73 -0.26 -4.18 16 26 C -0.22 -4.50 10.20 -26.73 -0.27 -4.77 16 27 H 0.26 7.16 8.32 -40.82 -0.34 6.82 16 28 H 0.04 0.86 7.97 -51.92 -0.41 0.45 16 29 H 0.10 2.65 5.76 -51.93 -0.30 2.35 16 30 H 0.09 1.72 8.05 -51.93 -0.42 1.30 16 31 H 0.08 1.30 7.61 -51.93 -0.39 0.90 16 32 H 0.10 1.04 6.25 -51.93 -0.32 0.72 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.08 0.56 8.14 -51.92 -0.42 0.14 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.08 0.60 8.12 -51.93 -0.42 0.18 16 38 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16 39 H 0.12 1.09 8.06 -52.48 -0.42 0.66 16 40 H 0.12 1.44 8.06 -52.48 -0.42 1.02 16 41 H 0.17 3.21 4.96 -53.72 -0.27 2.94 16 42 H 0.09 1.64 8.14 -51.93 -0.42 1.22 16 43 H 0.09 1.98 6.45 -51.93 -0.34 1.64 16 44 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 45 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 46 H 0.09 2.21 8.14 -51.93 -0.42 1.79 16 LS Contribution 365.74 15.07 5.51 5.51 Total: -1.00 -30.47 365.74 -11.03 -41.50 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: -7.01 Total: 7.90 kcal Atomic # 6 Polarization: -8.50 SS G_CDS: -4.43 Total: -12.93 kcal Atomic # 7 Polarization: -46.95 SS G_CDS: -0.15 Total: -47.10 kcal Atomic # 8 Polarization: -10.90 SS G_CDS: 0.07 Total: -10.83 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.03 Total: 15.96 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.47 -11.03 -41.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000284947310.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.610 kcal (2) G-P(sol) polarization free energy of solvation -30.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds