Wall clock time and date at job start Tue Mar 31 2020 11:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 119.99760 * 2 1 4 4 H 1.48500 * 109.46847 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47577 * 299.99931 * 3 2 1 6 6 H 1.48499 * 109.47041 * 60.00281 * 3 2 1 7 7 C 1.37874 * 119.99839 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99904 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00253 * 359.97438 * 7 2 1 10 10 H 1.08995 * 109.49850 * 300.06436 * 9 7 2 11 11 C 1.53042 * 109.49889 * 180.02562 * 9 7 2 12 12 C 1.53039 * 109.53547 * 178.65386 * 11 9 7 13 13 C 1.53188 * 109.31732 * 61.36551 * 12 11 9 14 14 N 1.46926 * 108.77400 * 305.36636 * 13 12 11 15 15 C 1.34781 * 120.62543 * 233.58581 * 14 13 12 16 16 O 1.21291 * 119.99378 * 179.97438 * 15 14 13 17 17 C 1.50695 * 120.00331 * 359.97438 * 15 14 13 18 18 N 1.46901 * 109.46963 * 174.64979 * 17 15 14 19 19 C 1.47906 * 110.99999 * 284.05716 * 18 17 15 20 20 C 1.54595 * 102.62918 * 265.48838 * 19 18 17 21 21 C 1.51582 * 102.83560 * 334.46981 * 20 19 18 22 22 C 1.37916 * 131.56567 * 196.34629 * 21 20 19 23 23 C 1.38301 * 120.08237 * 179.28449 * 22 21 20 24 24 C 1.38305 * 119.88416 * 359.97438 * 23 22 21 25 25 C 1.37912 * 120.26471 * 0.13326 * 24 23 22 26 26 C 1.38964 * 107.95133 * 15.93386 * 21 20 19 27 27 C 1.46922 * 118.74420 * 53.85683 * 14 13 12 28 28 H 0.96997 * 120.00082 * 359.97438 * 1 2 3 29 29 H 1.08993 * 109.45790 * 58.63114 * 11 9 7 30 30 H 1.09000 * 109.45806 * 298.67221 * 11 9 7 31 31 H 1.09002 * 109.49748 * 301.40691 * 12 11 9 32 32 H 1.09009 * 109.49309 * 181.31616 * 12 11 9 33 33 H 1.09001 * 109.58983 * 185.57931 * 13 12 11 34 34 H 1.09005 * 109.59012 * 65.14989 * 13 12 11 35 35 H 1.08998 * 109.47374 * 294.64961 * 17 15 14 36 36 H 1.08998 * 109.46992 * 54.64907 * 17 15 14 37 37 H 1.08994 * 110.77962 * 23.77371 * 19 18 17 38 38 H 1.09008 * 110.77826 * 147.20305 * 19 18 17 39 39 H 1.09003 * 110.74354 * 216.13542 * 20 19 18 40 40 H 1.09007 * 110.89636 * 92.87581 * 20 19 18 41 41 H 1.08002 * 119.95836 * 359.28213 * 22 21 20 42 42 H 1.08003 * 120.05633 * 180.02562 * 23 22 21 43 43 H 1.07996 * 119.86551 * 180.14465 * 24 23 22 44 44 H 1.07993 * 119.90304 * 180.02562 * 25 24 23 45 45 H 1.08998 * 109.58308 * 65.92524 * 27 14 13 46 46 H 1.08993 * 109.59195 * 186.35517 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6237 -2.5571 0.8889 11 6 2.2450 -3.6629 -0.0005 12 6 1.4809 -4.9885 0.0333 13 6 0.6051 -5.1007 -1.2185 14 7 -0.2534 -3.9114 -1.3031 15 6 -1.5898 -4.0366 -1.4250 16 8 -2.2878 -3.0470 -1.4934 17 6 -2.2168 -5.4060 -1.4762 18 7 -3.6800 -5.2747 -1.4812 19 6 -4.1867 -4.9396 -0.1326 20 6 -4.5459 -6.3267 0.4478 21 6 -4.8150 -7.1522 -0.7947 22 6 -5.4533 -8.3623 -0.9688 23 6 -5.5799 -8.9034 -2.2352 24 6 -5.0656 -8.2286 -3.3275 25 6 -4.4244 -7.0194 -3.1586 26 6 -4.2895 -6.4691 -1.8849 27 6 0.3730 -2.5832 -1.2584 28 1 -0.4850 0.8400 0.0004 29 1 2.8875 -3.5915 0.8769 30 1 2.8557 -3.6187 -0.9023 31 1 0.8511 -5.0228 0.9223 32 1 2.1897 -5.8163 0.0569 33 1 -0.0147 -5.9949 -1.1518 34 1 1.2386 -5.1578 -2.1037 35 1 -1.8950 -5.9193 -2.3823 36 1 -1.9065 -5.9805 -0.6035 37 1 -3.4107 -4.4600 0.4639 38 1 -5.0718 -4.3068 -0.1983 39 1 -5.4382 -6.2651 1.0709 40 1 -3.7102 -6.7402 1.0125 41 1 -5.8548 -8.8880 -0.1151 42 1 -6.0802 -9.8508 -2.3712 43 1 -5.1666 -8.6503 -4.3166 44 1 -4.0254 -6.4973 -4.0156 45 1 0.9879 -2.4392 -2.1468 46 1 -0.3999 -1.8158 -1.2182 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597911023.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:27 Heat of formation + Delta-G solvation = 7.681396 kcal Electronic energy + Delta-G solvation = -26483.615953 eV Core-core repulsion = 22952.059464 eV Total energy + Delta-G solvation = -3531.556489 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.96031 -39.21546 -37.05497 -36.22754 -33.40970 -32.45726 -31.74794 -30.30321 -29.63105 -28.96071 -26.93598 -25.02256 -24.05782 -23.09160 -21.84577 -21.33938 -21.17832 -19.64876 -18.17589 -17.08491 -16.59409 -16.24949 -16.01860 -15.46440 -15.23499 -14.90875 -14.66722 -14.34194 -13.80626 -13.69735 -13.60865 -13.28512 -12.94287 -12.93844 -12.63248 -12.52614 -12.34490 -12.25014 -11.88839 -11.69326 -11.56986 -11.21573 -11.01564 -10.97782 -10.89940 -10.49875 -10.39691 -10.24412 -9.89516 -9.74355 -9.17151 -9.11197 -8.93176 -8.76646 -8.43382 -7.90590 -7.71226 -5.99647 -4.08372 1.18069 1.26079 3.25783 3.30418 3.36730 3.38827 3.41441 3.63549 3.91859 4.42859 4.48636 4.68017 4.87098 4.90673 4.95782 5.03667 5.17170 5.21114 5.30599 5.31218 5.36318 5.40526 5.48942 5.51246 5.64844 5.67298 5.80958 5.84479 5.96803 6.06350 6.14452 6.24745 6.29168 6.33779 6.37777 6.57632 6.63417 6.66580 6.80264 6.87657 6.96412 7.15348 7.23425 7.31469 7.64577 7.87051 8.00034 8.27815 8.39192 8.92018 8.97733 9.57372 11.05628 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.023819 B = 0.003163 C = 0.003015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.226516 B = 8850.780390 C = 9284.351536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.063 3.937 3 Si 0.891 3.109 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.058 0.942 9 C 0.041 3.959 10 H 0.028 0.972 11 C -0.111 4.111 12 C -0.133 4.133 13 C 0.108 3.892 14 N -0.609 5.609 15 C 0.504 3.496 16 O -0.516 6.516 17 C 0.042 3.958 18 N -0.473 5.473 19 C 0.059 3.941 20 C -0.113 4.113 21 C -0.139 4.139 22 C -0.090 4.090 23 C -0.137 4.137 24 C -0.105 4.105 25 C -0.113 4.113 26 C 0.097 3.903 27 C 0.115 3.885 28 H 0.263 0.737 29 H 0.051 0.949 30 H 0.050 0.950 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.067 0.933 34 H 0.062 0.938 35 H 0.099 0.901 36 H 0.067 0.933 37 H 0.089 0.911 38 H 0.092 0.908 39 H 0.086 0.914 40 H 0.080 0.920 41 H 0.119 0.881 42 H 0.123 0.877 43 H 0.125 0.875 44 H 0.124 0.876 45 H 0.041 0.959 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.641 -18.982 -2.528 20.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.140 4.140 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.076 0.924 9 C 0.022 3.978 10 H 0.046 0.954 11 C -0.148 4.148 12 C -0.172 4.172 13 C -0.015 4.015 14 N -0.343 5.343 15 C 0.289 3.711 16 O -0.390 6.390 17 C -0.087 4.087 18 N -0.189 5.189 19 C -0.067 4.067 20 C -0.152 4.152 21 C -0.142 4.142 22 C -0.109 4.109 23 C -0.156 4.156 24 C -0.124 4.124 25 C -0.133 4.133 26 C 0.000 4.000 27 C -0.006 4.006 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.117 0.883 36 H 0.085 0.915 37 H 0.107 0.893 38 H 0.110 0.890 39 H 0.105 0.895 40 H 0.099 0.901 41 H 0.137 0.863 42 H 0.141 0.859 43 H 0.143 0.857 44 H 0.142 0.858 45 H 0.059 0.941 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -8.242 -17.821 -2.912 19.849 hybrid contribution 0.711 0.244 0.487 0.896 sum -7.531 -17.576 -2.425 19.275 Atomic orbital electron populations 1.69898 1.05707 1.26724 1.49334 1.25053 0.94882 0.99248 0.94850 0.86549 0.80037 0.83859 0.77639 1.19818 1.20965 1.21025 1.21114 0.92922 0.90149 1.51803 0.92360 1.19040 0.92592 0.92233 0.93953 0.95383 1.21626 0.98571 0.94065 1.00571 1.21944 0.98623 0.99174 0.97425 1.21636 0.93619 0.87701 0.98591 1.48522 1.05210 1.08888 1.71707 1.20202 0.82478 0.90446 0.77986 1.90730 1.60918 1.38968 1.48426 1.22159 0.86774 0.96725 1.03021 1.59634 1.04480 1.28411 1.26421 1.23140 1.01793 0.95380 0.86430 1.21770 1.02525 0.95224 0.95632 1.21085 1.02180 0.95401 0.95538 1.20382 0.98725 0.94408 0.97373 1.21020 1.01758 1.00334 0.92451 1.20910 0.97940 0.94579 0.98935 1.20554 1.01426 0.96169 0.95147 1.19647 0.97423 0.89068 0.93823 1.22345 0.98563 0.81287 0.98369 0.92711 0.93044 0.93171 0.92252 0.92253 0.91509 0.91965 0.88336 0.91534 0.89286 0.88957 0.89518 0.90113 0.86327 0.85943 0.85703 0.85755 0.94099 0.86003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.59 11.41 55.43 0.63 -24.96 16 2 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 3 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 4 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 5 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 7 C -0.52 -14.05 8.56 -34.44 -0.29 -14.34 16 8 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 9 C 0.04 1.00 2.26 -91.42 -0.21 0.79 16 10 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 11 C -0.11 -2.16 5.10 -26.69 -0.14 -2.29 16 12 C -0.13 -2.08 6.08 -26.61 -0.16 -2.24 16 13 C 0.11 1.64 6.34 -3.71 -0.02 1.61 16 14 N -0.61 -11.97 2.97 -172.50 -0.51 -12.48 16 15 C 0.50 9.97 7.17 -10.99 -0.08 9.89 16 16 O -0.52 -12.58 15.38 5.55 0.09 -12.50 16 17 C 0.04 0.63 3.65 -4.98 -0.02 0.61 16 18 N -0.47 -7.30 4.59 -170.38 -0.78 -8.08 16 19 C 0.06 0.84 6.36 -2.43 -0.02 0.83 16 20 C -0.11 -1.27 6.92 -26.61 -0.18 -1.45 16 21 C -0.14 -1.66 6.23 -104.04 -0.65 -2.31 16 22 C -0.09 -0.91 10.03 -39.68 -0.40 -1.31 16 23 C -0.14 -1.26 10.06 -39.53 -0.40 -1.66 16 24 C -0.11 -1.01 10.02 -39.68 -0.40 -1.41 16 25 C -0.11 -1.33 10.05 -39.27 -0.39 -1.73 16 26 C 0.10 1.30 5.49 -83.40 -0.46 0.84 16 27 C 0.11 2.75 5.43 -3.48 -0.02 2.73 16 28 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 29 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.06 0.75 8.14 -51.92 -0.42 0.33 16 33 H 0.07 0.81 5.89 -51.93 -0.31 0.50 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.10 1.30 7.93 -51.93 -0.41 0.89 16 36 H 0.07 0.88 7.21 -51.93 -0.37 0.51 16 37 H 0.09 1.38 7.31 -51.93 -0.38 1.01 16 38 H 0.09 1.32 8.14 -51.92 -0.42 0.90 16 39 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.08 0.84 8.14 -51.92 -0.42 0.41 16 41 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 42 H 0.12 0.82 8.06 -52.48 -0.42 0.39 16 43 H 0.13 0.90 8.06 -52.49 -0.42 0.47 16 44 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 45 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 46 H 0.12 3.45 5.15 -51.93 -0.27 3.18 16 LS Contribution 363.46 15.07 5.48 5.48 Total: -1.00 -31.92 363.46 -11.25 -43.17 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -7.20 Total: 2.95 kcal Atomic # 6 Polarization: -5.88 SS G_CDS: -3.93 Total: -9.80 kcal Atomic # 7 Polarization: -44.86 SS G_CDS: -0.66 Total: -45.52 kcal Atomic # 8 Polarization: -12.58 SS G_CDS: 0.09 Total: -12.50 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.92 -11.25 -43.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597911023.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.847 kcal (2) G-P(sol) polarization free energy of solvation -31.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds