Wall clock time and date at job start Tue Mar 31 2020 11:18:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86797 * 119.99996 * 2 1 4 4 H 1.48498 * 109.47212 * 269.99969 * 3 2 1 5 5 H 1.48510 * 109.47119 * 29.99730 * 3 2 1 6 6 H 1.48493 * 109.47260 * 149.99674 * 3 2 1 7 7 C 1.37868 * 119.99852 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99946 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00284 * 0.02562 * 7 2 1 10 10 H 1.08993 * 109.49916 * 59.92827 * 9 7 2 11 11 C 1.53043 * 109.50043 * 180.02562 * 9 7 2 12 12 C 1.53035 * 109.53834 * 181.31153 * 11 9 7 13 13 C 1.53188 * 109.31482 * 298.63383 * 12 11 9 14 14 N 1.46926 * 108.77767 * 54.63097 * 13 12 11 15 15 C 1.34777 * 120.62675 * 126.36844 * 14 13 12 16 16 O 1.21281 * 119.99897 * 180.02562 * 15 14 13 17 17 C 1.50700 * 120.00027 * 0.02562 * 15 14 13 18 18 N 1.46907 * 109.46788 * 184.54956 * 17 15 14 19 19 C 1.47902 * 110.99756 * 283.91594 * 18 17 15 20 20 C 1.54612 * 102.63271 * 265.33626 * 19 18 17 21 21 C 1.51575 * 102.81277 * 334.40781 * 20 19 18 22 22 C 1.37922 * 131.56409 * 196.46140 * 21 20 19 23 23 C 1.38307 * 120.07926 * 179.97438 * 22 21 20 24 24 C 1.38301 * 119.88327 * 359.53349 * 23 22 21 25 25 C 1.37907 * 120.26577 * 0.33641 * 24 23 22 26 26 C 1.38958 * 107.95122 * 16.17190 * 21 20 19 27 27 C 1.46920 * 118.73777 * 306.64954 * 14 13 12 28 28 H 0.97000 * 120.00023 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.46128 * 61.28315 * 11 9 7 30 30 H 1.09007 * 109.44313 * 301.32259 * 11 9 7 31 31 H 1.09002 * 109.49879 * 178.67823 * 12 11 9 32 32 H 1.09000 * 109.49778 * 58.58406 * 12 11 9 33 33 H 1.09007 * 109.58267 * 294.84383 * 13 12 11 34 34 H 1.08997 * 109.70844 * 174.49575 * 13 12 11 35 35 H 1.08999 * 109.47592 * 64.54638 * 17 15 14 36 36 H 1.08997 * 109.47116 * 304.54426 * 17 15 14 37 37 H 1.08993 * 110.78178 * 147.05058 * 19 18 17 38 38 H 1.08996 * 110.78127 * 23.61576 * 19 18 17 39 39 H 1.09000 * 110.74024 * 216.07795 * 20 19 18 40 40 H 1.08999 * 110.89880 * 92.80949 * 20 19 18 41 41 H 1.08001 * 119.96084 * 359.71815 * 22 21 20 42 42 H 1.07998 * 120.05527 * 179.76064 * 23 22 21 43 43 H 1.08001 * 119.87260 * 180.35667 * 24 23 22 44 44 H 1.08003 * 119.90277 * 179.97438 * 25 24 23 45 45 H 1.09001 * 109.58539 * 173.14370 * 27 14 13 46 46 H 1.09004 * 109.58608 * 293.56207 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 1 0.6236 -2.5570 -0.8888 11 6 2.2450 -3.6629 0.0018 12 6 1.4810 -4.9885 -0.0312 13 6 0.6049 -5.0997 1.2205 14 7 -0.2537 -3.9103 1.3040 15 6 -1.5902 -4.0354 1.4247 16 8 -2.2882 -3.0459 1.4922 17 6 -2.2173 -5.4047 1.4758 18 7 -3.6802 -5.2728 1.4987 19 6 -4.1538 -4.8558 2.8364 20 6 -4.5016 -6.2045 3.5075 21 6 -4.8033 -7.1013 2.3234 22 6 -5.4503 -8.3163 2.2371 23 6 -5.5965 -8.9382 1.0104 24 6 -5.1011 -8.3351 -0.1313 25 6 -4.4557 -7.1190 -0.0509 26 6 -4.2988 -6.4887 1.1827 27 6 0.3718 -2.5821 1.2470 28 1 -0.4850 0.8400 -0.0004 29 1 2.8556 -3.6179 0.9036 30 1 2.8877 -3.5921 -0.8758 31 1 2.1897 -5.8164 -0.0539 32 1 0.8514 -5.0235 -0.9202 33 1 1.2382 -5.1561 2.1059 34 1 -0.0149 -5.9940 1.1571 35 1 -1.8851 -5.9233 2.3751 36 1 -1.9177 -5.9746 0.5963 37 1 -5.0390 -4.2253 2.7540 38 1 -3.3628 -4.3440 3.3845 39 1 -5.3779 -6.1025 4.1477 40 1 -3.6531 -6.5867 4.0750 41 1 -5.8397 -8.7846 3.1290 42 1 -6.0998 -9.8914 0.9438 43 1 -5.2205 -8.8181 -1.0899 44 1 -4.0708 -6.6534 -0.9462 45 1 -0.4017 -1.8157 1.1986 46 1 0.9856 -2.4290 2.1347 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597911024.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:29 Heat of formation + Delta-G solvation = 7.778016 kcal Electronic energy + Delta-G solvation = -26446.519153 eV Core-core repulsion = 22914.966853 eV Total energy + Delta-G solvation = -3531.552299 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.96596 -39.22432 -37.07833 -36.21975 -33.42188 -32.46548 -31.74028 -30.29952 -29.64343 -28.96618 -26.93886 -25.01539 -24.06309 -23.09814 -21.83657 -21.34131 -21.17614 -19.67913 -18.13430 -17.08637 -16.63551 -16.21936 -16.00060 -15.44928 -15.23560 -14.95018 -14.52004 -14.47558 -13.75635 -13.72375 -13.66111 -13.29288 -13.12788 -12.75673 -12.62699 -12.47847 -12.33260 -12.26183 -11.93630 -11.67352 -11.58180 -11.24225 -10.99349 -10.96133 -10.90225 -10.49537 -10.39338 -10.22558 -9.88565 -9.74948 -9.17076 -9.10103 -8.92791 -8.76740 -8.41336 -7.90693 -7.71493 -5.98089 -4.07344 1.18514 1.26700 3.22921 3.31791 3.38627 3.39918 3.41063 3.64651 3.90949 4.43512 4.47480 4.66864 4.87238 4.90941 4.95659 5.02806 5.14889 5.24201 5.30711 5.31628 5.33947 5.41501 5.50067 5.50344 5.65086 5.65714 5.78781 5.83720 5.97325 6.04682 6.15595 6.25261 6.30649 6.34095 6.38630 6.59641 6.64259 6.67549 6.81209 6.89008 6.98247 7.14896 7.24335 7.32073 7.66235 7.89276 8.01829 8.28115 8.40433 8.91790 8.98380 9.58343 11.06944 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.022626 B = 0.003178 C = 0.003003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.204771 B = 8807.413481 C = 9323.006268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.063 3.937 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.522 4.522 8 H 0.058 0.942 9 C 0.040 3.960 10 H 0.028 0.972 11 C -0.110 4.110 12 C -0.134 4.134 13 C 0.109 3.891 14 N -0.608 5.608 15 C 0.505 3.495 16 O -0.518 6.518 17 C 0.042 3.958 18 N -0.474 5.474 19 C 0.061 3.939 20 C -0.114 4.114 21 C -0.141 4.141 22 C -0.090 4.090 23 C -0.137 4.137 24 C -0.104 4.104 25 C -0.113 4.113 26 C 0.097 3.903 27 C 0.114 3.886 28 H 0.263 0.737 29 H 0.049 0.951 30 H 0.051 0.949 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.099 0.901 37 H 0.092 0.908 38 H 0.088 0.912 39 H 0.086 0.914 40 H 0.079 0.921 41 H 0.118 0.882 42 H 0.123 0.877 43 H 0.125 0.875 44 H 0.125 0.875 45 H 0.123 0.877 46 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.612 -18.898 4.977 20.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.140 4.140 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.076 0.924 9 C 0.020 3.980 10 H 0.046 0.954 11 C -0.148 4.148 12 C -0.172 4.172 13 C -0.015 4.015 14 N -0.343 5.343 15 C 0.290 3.710 16 O -0.393 6.393 17 C -0.087 4.087 18 N -0.190 5.190 19 C -0.065 4.065 20 C -0.152 4.152 21 C -0.143 4.143 22 C -0.109 4.109 23 C -0.156 4.156 24 C -0.123 4.123 25 C -0.133 4.133 26 C 0.001 3.999 27 C -0.006 4.006 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.117 0.883 37 H 0.110 0.890 38 H 0.107 0.893 39 H 0.104 0.896 40 H 0.098 0.902 41 H 0.136 0.864 42 H 0.141 0.859 43 H 0.143 0.857 44 H 0.143 0.857 45 H 0.141 0.859 46 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -8.224 -17.756 4.661 20.116 hybrid contribution 0.730 0.270 0.447 0.897 sum -7.494 -17.486 5.107 19.698 Atomic orbital electron populations 1.69891 1.05695 1.26830 1.49221 1.25056 0.94881 0.99239 0.94866 0.86600 0.79791 0.83556 0.78089 1.20694 1.21182 1.19945 1.21067 0.92874 0.90134 1.51954 0.92405 1.18891 0.92624 0.92265 0.94171 0.95362 1.21621 0.98559 0.94067 1.00547 1.21944 0.98635 0.99153 0.97487 1.21629 0.93605 0.87701 0.98588 1.48511 1.05202 1.08887 1.71653 1.20188 0.82420 0.90413 0.77938 1.90719 1.60823 1.39025 1.48690 1.22150 0.86734 0.96865 1.02941 1.59614 1.04898 1.25271 1.29203 1.23122 1.02006 0.95339 0.86061 1.21776 1.02317 0.94893 0.96184 1.21061 1.02316 0.95587 0.95384 1.20375 0.98698 0.93990 0.97847 1.21021 1.01828 1.00274 0.92454 1.20919 0.97883 0.94849 0.98622 1.20584 1.01212 0.95558 0.95902 1.19640 0.97410 0.89062 0.93807 1.22174 0.98683 0.81304 0.98404 0.92642 0.93207 0.93029 0.92246 0.92123 0.92035 0.91514 0.91552 0.88291 0.89014 0.89350 0.89583 0.90220 0.86363 0.85940 0.85657 0.85660 0.85911 0.94152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.79 11.39 55.43 0.63 -25.15 16 2 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 3 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.52 -14.14 8.56 -34.44 -0.29 -14.43 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 9 C 0.04 0.98 2.24 -91.87 -0.21 0.77 16 10 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 11 C -0.11 -2.17 5.11 -26.69 -0.14 -2.31 16 12 C -0.13 -2.12 6.08 -26.62 -0.16 -2.28 16 13 C 0.11 1.64 6.35 -3.71 -0.02 1.62 16 14 N -0.61 -11.99 2.98 -173.03 -0.52 -12.50 16 15 C 0.51 9.99 7.33 -10.99 -0.08 9.91 16 16 O -0.52 -12.55 14.95 5.56 0.08 -12.47 16 17 C 0.04 0.63 3.63 -4.97 -0.02 0.61 16 18 N -0.47 -7.31 4.65 -170.38 -0.79 -8.10 16 19 C 0.06 0.84 6.22 -2.43 -0.02 0.82 16 20 C -0.11 -1.21 6.93 -26.61 -0.18 -1.40 16 21 C -0.14 -1.66 6.23 -104.04 -0.65 -2.31 16 22 C -0.09 -0.91 10.03 -39.67 -0.40 -1.30 16 23 C -0.14 -1.27 10.06 -39.53 -0.40 -1.67 16 24 C -0.10 -1.03 10.02 -39.68 -0.40 -1.43 16 25 C -0.11 -1.37 10.04 -39.27 -0.39 -1.76 16 26 C 0.10 1.32 5.49 -83.40 -0.46 0.86 16 27 C 0.11 2.76 5.38 -3.93 -0.02 2.74 16 28 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 29 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.05 1.00 8.14 -51.92 -0.42 0.58 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.07 0.81 5.90 -51.93 -0.31 0.50 16 35 H 0.07 0.85 7.90 -51.93 -0.41 0.44 16 36 H 0.10 1.36 7.26 -51.93 -0.38 0.98 16 37 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 38 H 0.09 1.27 7.12 -51.93 -0.37 0.90 16 39 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 42 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 43 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 44 H 0.13 1.48 8.06 -52.48 -0.42 1.06 16 45 H 0.12 3.49 5.11 -51.93 -0.27 3.22 16 46 H 0.04 0.97 8.14 -51.93 -0.42 0.54 16 LS Contribution 362.82 15.07 5.47 5.47 Total: -1.00 -32.14 362.82 -11.27 -43.41 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -7.19 Total: 2.95 kcal Atomic # 6 Polarization: -5.98 SS G_CDS: -3.93 Total: -9.91 kcal Atomic # 7 Polarization: -45.08 SS G_CDS: -0.68 Total: -45.76 kcal Atomic # 8 Polarization: -12.55 SS G_CDS: 0.08 Total: -12.47 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.14 -11.27 -43.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597911024.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.189 kcal (2) G-P(sol) polarization free energy of solvation -32.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds