Wall clock time and date at job start Tue Mar 31 2020 10:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47232 * 2 1 4 4 C 1.52999 * 109.47592 * 239.99805 * 2 1 3 5 5 C 1.52997 * 109.47592 * 179.97438 * 4 2 1 6 6 C 1.52996 * 109.47165 * 60.00300 * 5 4 2 7 7 C 1.52995 * 109.47577 * 180.02562 * 6 5 4 8 8 C 1.50705 * 109.46702 * 295.00088 * 7 6 5 9 9 O 1.20823 * 120.00198 * 359.97438 * 8 7 6 10 10 O 1.34236 * 120.00008 * 180.02562 * 8 7 6 11 11 C 1.45193 * 116.99834 * 179.97438 * 10 8 7 12 12 C 1.52999 * 109.46972 * 179.97438 * 11 10 8 13 13 C 1.52997 * 109.47481 * 179.97438 * 12 11 10 14 14 S 1.80995 * 109.47467 * 179.97438 * 13 12 11 15 15 C 1.76208 * 100.00122 * 179.97438 * 14 13 12 16 16 H 1.07997 * 119.99915 * 0.02562 * 15 14 13 17 17 C 1.38799 * 120.00029 * 180.02562 * 15 14 13 18 18 N 1.31635 * 119.99801 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 119.99928 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47202 * 60.00208 * 19 17 15 21 21 H 1.48500 * 109.47210 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.47454 * 300.00102 * 19 17 15 23 23 C 1.53002 * 109.46972 * 300.00293 * 6 5 4 24 24 C 1.52997 * 109.47415 * 59.99860 * 23 6 5 25 25 H 1.09001 * 109.47375 * 299.99867 * 1 2 3 26 26 H 1.09002 * 109.46777 * 60.00422 * 1 2 3 27 27 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47261 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.47153 * 299.99992 * 3 2 1 30 30 H 1.09001 * 109.47289 * 60.00075 * 3 2 1 31 31 H 1.09000 * 109.47160 * 300.00333 * 4 2 1 32 32 H 1.09002 * 109.46719 * 60.00054 * 4 2 1 33 33 H 1.09000 * 109.47140 * 300.00346 * 5 4 2 34 34 H 1.09001 * 109.47375 * 180.02562 * 5 4 2 35 35 H 1.08996 * 109.47134 * 59.99508 * 6 5 4 36 36 H 1.08998 * 109.47220 * 54.99171 * 7 6 5 37 37 H 1.08991 * 109.47712 * 174.99863 * 7 6 5 38 38 H 1.09007 * 109.46827 * 299.99450 * 11 10 8 39 39 H 1.08999 * 109.47539 * 59.99766 * 11 10 8 40 40 H 1.09003 * 109.47140 * 299.99852 * 12 11 10 41 41 H 1.08999 * 109.47180 * 59.99546 * 12 11 10 42 42 H 1.09003 * 109.46944 * 300.00133 * 13 12 11 43 43 H 1.08999 * 109.47152 * 59.99691 * 13 12 11 44 44 H 0.97003 * 119.99451 * 179.97438 * 18 17 15 45 45 H 1.09000 * 109.46986 * 299.99742 * 23 6 5 46 46 H 1.09001 * 109.47601 * 180.02562 * 23 6 5 47 47 H 1.09001 * 109.46922 * 180.02562 * 24 23 6 48 48 H 1.09000 * 109.47140 * 59.99976 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5701 -0.7207 -1.2495 6 6 4.0806 -1.4416 -0.0003 7 6 5.6105 -1.4405 -0.0002 8 6 6.1134 -2.2551 -1.1641 9 8 5.3286 -2.7828 -1.9162 10 8 7.4333 -2.3954 -1.3648 11 6 7.8454 -3.1941 -2.5050 12 6 9.3733 -3.2390 -2.5707 13 6 9.8078 -4.0812 -3.7718 14 16 11.6153 -4.1336 -3.8499 15 6 11.8307 -5.1385 -5.2813 16 1 10.9685 -5.5127 -5.8131 17 6 13.1086 -5.4492 -5.7252 18 7 14.1595 -4.9936 -5.0766 19 14 13.3369 -6.5151 -7.2420 20 1 12.7017 -5.8553 -8.4110 21 1 14.7870 -6.6977 -7.5050 22 1 12.7037 -7.8392 -7.0166 23 6 3.5705 -0.7204 1.2490 24 6 2.0405 -0.7209 1.2493 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 -1.7489 -1.2492 32 1 1.6768 -0.2074 -2.1392 33 1 3.9330 0.3071 -1.2497 34 1 3.9334 -1.2342 -2.1397 35 1 3.7176 -2.4693 0.0000 36 1 5.9732 -0.4166 -0.0899 37 1 5.9742 -1.8745 0.9311 38 1 7.4561 -4.2068 -2.3990 39 1 7.4557 -2.7490 -3.4205 40 1 9.7623 -2.2263 -2.6768 41 1 9.7634 -3.6839 -1.6553 42 1 9.4188 -5.0939 -3.6653 43 1 9.4177 -3.6367 -4.6874 44 1 15.0526 -5.2111 -5.3866 45 1 3.9335 0.3074 1.2488 46 1 3.9345 -1.2336 2.1390 47 1 1.6772 -0.2067 2.1391 48 1 1.6776 -1.7487 1.2495 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805515214.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:53 Heat of formation + Delta-G solvation = -141.970877 kcal Electronic energy + Delta-G solvation = -23497.927674 eV Core-core repulsion = 20063.032975 eV Total energy + Delta-G solvation = -3434.894698 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.170 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.79868 -39.65113 -36.83145 -34.61009 -33.48863 -32.44628 -31.09833 -29.89421 -27.68577 -26.75013 -25.58868 -24.93697 -23.07728 -21.64951 -21.27867 -20.33189 -18.81842 -17.69935 -17.32722 -16.70948 -16.39042 -15.66495 -15.15233 -15.00910 -14.82324 -14.53158 -14.31620 -14.20542 -13.80510 -13.58742 -13.07562 -12.88420 -12.63128 -12.60446 -12.27099 -12.23130 -12.12576 -12.03972 -11.78732 -11.62547 -11.33165 -11.24667 -11.13658 -11.10046 -10.96913 -10.93174 -10.70574 -10.64437 -10.46020 -10.34208 -10.26746 -10.02570 -9.62870 -9.07263 -8.36529 -6.56892 -6.24986 -3.96181 2.17418 2.61219 3.21708 3.22696 3.27257 3.54303 4.19790 4.22413 4.28877 4.36657 4.58639 4.63946 4.74179 4.92692 5.04328 5.07319 5.10229 5.12411 5.15158 5.19886 5.23035 5.24575 5.33978 5.34360 5.36969 5.39481 5.47948 5.49722 5.59199 5.62060 5.64941 5.72004 5.77491 5.77799 5.86187 5.88658 5.92348 6.01648 6.05096 6.15683 6.21044 6.25862 6.44993 6.51522 6.68802 7.58441 7.75199 8.34291 9.21218 10.83098 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.041319 B = 0.001751 C = 0.001714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.485349 B =15988.832589 C =16327.989529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.068 4.068 3 C -0.145 4.145 4 C -0.105 4.105 5 C -0.125 4.125 6 C -0.075 4.075 7 C -0.112 4.112 8 C 0.458 3.542 9 O -0.508 6.508 10 O -0.358 6.358 11 C 0.073 3.927 12 C -0.098 4.098 13 C -0.115 4.115 14 S -0.124 6.124 15 C -0.519 4.519 16 H 0.073 0.927 17 C 0.072 3.928 18 N -0.869 5.869 19 Si 0.920 3.080 20 H -0.274 1.274 21 H -0.282 1.282 22 H -0.274 1.274 23 C -0.116 4.116 24 C -0.106 4.106 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.062 0.938 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.104 0.896 37 H 0.105 0.895 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.064 0.936 43 H 0.064 0.936 44 H 0.268 0.732 45 H 0.068 0.932 46 H 0.064 0.936 47 H 0.061 0.939 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.153 11.564 13.794 30.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.068 4.068 3 C -0.202 4.202 4 C -0.142 4.142 5 C -0.162 4.162 6 C -0.093 4.093 7 C -0.150 4.150 8 C 0.301 3.699 9 O -0.396 6.396 10 O -0.274 6.274 11 C -0.002 4.002 12 C -0.136 4.136 13 C -0.263 4.263 14 S 0.105 5.895 15 C -0.668 4.668 16 H 0.091 0.909 17 C -0.137 4.137 18 N -0.505 5.505 19 Si 0.746 3.254 20 H -0.199 1.199 21 H -0.208 1.208 22 H -0.199 1.199 23 C -0.154 4.154 24 C -0.144 4.144 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.081 0.919 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.122 0.878 37 H 0.123 0.877 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.096 0.904 41 H 0.096 0.904 42 H 0.082 0.918 43 H 0.082 0.918 44 H 0.078 0.922 45 H 0.086 0.914 46 H 0.082 0.918 47 H 0.080 0.920 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -24.362 11.867 14.220 30.603 hybrid contribution -0.721 -1.362 -1.917 2.460 sum -25.083 10.505 12.303 29.847 Atomic orbital electron populations 1.21867 0.94830 1.01655 1.01553 1.20570 0.95034 0.95613 0.95538 1.21974 1.01580 0.95239 1.01378 1.21545 0.95546 1.00336 0.96787 1.21786 0.95607 1.00307 0.98503 1.21005 0.91553 1.01061 0.95683 1.21511 0.96956 1.00868 0.95628 1.23727 0.80815 0.79158 0.86163 1.90634 1.56654 1.45789 1.46527 1.86489 1.25450 1.66536 1.48966 1.23241 0.96492 0.94425 0.86063 1.21280 0.91084 1.01864 0.99392 1.23181 1.03355 1.01055 0.98722 1.84644 0.96330 1.68749 1.39824 1.22660 0.95105 1.36154 1.12838 0.90894 1.25017 0.94930 0.96082 0.97708 1.70013 0.98287 1.43111 1.39063 0.86203 0.77285 0.80256 0.81663 1.19915 1.20780 1.19912 1.21631 0.95829 1.00926 0.96982 1.21560 0.95184 1.00488 0.97122 0.92827 0.92759 0.92752 0.91913 0.92906 0.92976 0.91972 0.92145 0.92044 0.90214 0.90222 0.87771 0.87703 0.91253 0.91261 0.90391 0.90396 0.91761 0.91766 0.92195 0.91350 0.91777 0.91981 0.91946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.84 8.48 37.16 0.31 -0.52 16 2 C -0.07 -0.43 0.77 -154.51 -0.12 -0.55 16 3 C -0.14 -0.87 7.78 37.16 0.29 -0.59 16 4 C -0.10 -0.81 4.73 -26.73 -0.13 -0.94 16 5 C -0.12 -1.07 4.67 -26.73 -0.12 -1.20 16 6 C -0.07 -0.58 1.84 -90.62 -0.17 -0.75 16 7 C -0.11 -0.91 5.29 -27.88 -0.15 -1.05 16 8 C 0.46 5.61 7.68 36.01 0.28 5.89 16 9 O -0.51 -7.44 13.72 -18.75 -0.26 -7.70 16 10 O -0.36 -4.89 10.22 -39.27 -0.40 -5.29 16 11 C 0.07 1.06 5.47 37.16 0.20 1.26 16 12 C -0.10 -1.61 5.60 -26.73 -0.15 -1.76 16 13 C -0.11 -2.30 5.67 37.16 0.21 -2.09 16 14 S -0.12 -3.22 21.44 -107.50 -2.30 -5.52 16 15 C -0.52 -14.88 9.50 30.94 0.29 -14.59 16 16 H 0.07 2.02 7.80 -52.49 -0.41 1.61 16 17 C 0.07 2.04 5.49 -17.43 -0.10 1.94 16 18 N -0.87 -25.88 13.22 55.49 0.73 -25.15 16 19 Si 0.92 21.52 29.55 -169.99 -5.02 16.50 16 20 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 23 C -0.12 -0.70 4.93 -26.73 -0.13 -0.83 16 24 C -0.11 -0.65 4.73 -26.73 -0.13 -0.77 16 25 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 26 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.38 4.81 -51.93 -0.25 0.13 16 29 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.49 6.43 -51.93 -0.33 0.15 16 34 H 0.08 0.89 5.96 -51.93 -0.31 0.58 16 35 H 0.08 0.74 7.96 -51.93 -0.41 0.32 16 36 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.07 1.00 8.13 -51.93 -0.42 0.58 16 39 H 0.07 1.00 8.13 -51.93 -0.42 0.58 16 40 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 41 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 42 H 0.06 1.27 8.14 -51.92 -0.42 0.85 16 43 H 0.06 1.27 8.14 -51.92 -0.42 0.85 16 44 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 45 H 0.07 0.38 6.43 -51.93 -0.33 0.05 16 46 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 47 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 48 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 386.31 15.07 5.82 5.82 Total: -1.00 -31.44 386.31 -9.82 -41.27 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: -8.79 Total: -3.38 kcal Atomic # 6 Polarization: -16.95 SS G_CDS: 0.40 Total: -16.55 kcal Atomic # 7 Polarization: -25.88 SS G_CDS: 0.73 Total: -25.15 kcal Atomic # 8 Polarization: -12.33 SS G_CDS: -0.66 Total: -12.99 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: -3.22 SS G_CDS: -2.30 Total: -5.52 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -31.44 -9.82 -41.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805515214.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.706 kcal (2) G-P(sol) polarization free energy of solvation -31.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds