Wall clock time and date at job start Tue Mar 31 2020 11:33:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30878 * 1 3 3 Si 1.86799 * 120.00007 * 2 1 4 4 H 1.48501 * 109.47217 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47358 * 300.00061 * 3 2 1 6 6 H 1.48496 * 109.47516 * 60.00069 * 3 2 1 7 7 C 1.39891 * 120.00273 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00263 * 175.55576 * 7 2 1 9 9 C 1.41158 * 119.99535 * 355.55567 * 7 2 1 10 10 C 1.40868 * 120.16454 * 214.77546 * 9 7 2 11 11 C 1.36370 * 119.83073 * 180.02562 * 10 9 7 12 12 C 1.39481 * 120.16735 * 0.02872 * 11 10 9 13 13 N 1.39248 * 119.83099 * 179.97438 * 12 11 10 14 14 C 1.34776 * 120.00106 * 35.29604 * 13 12 11 15 15 O 1.21582 * 119.99857 * 355.70402 * 14 13 12 16 16 N 1.34774 * 120.00007 * 175.71326 * 14 13 12 17 17 C 1.46502 * 120.00164 * 179.97438 * 16 14 13 18 18 C 1.52999 * 109.47036 * 179.97438 * 17 16 14 19 19 C 1.50701 * 109.46801 * 179.97438 * 18 17 16 20 20 C 1.29442 * 117.95735 * 94.74148 * 19 18 17 21 21 C 1.50069 * 124.07173 * 180.74987 * 20 19 18 22 22 C 1.53018 * 110.15000 * 342.86287 * 21 20 19 23 23 C 1.53397 * 108.43751 * 49.43869 * 22 21 20 24 24 C 1.50067 * 117.96480 * 275.00062 * 19 18 17 25 25 C 1.39479 * 120.33520 * 0.24678 * 12 11 10 26 26 C 1.36372 * 120.16471 * 359.44829 * 25 12 11 27 27 H 0.96997 * 119.99977 * 0.02562 * 1 2 3 28 28 H 1.08009 * 120.08258 * 0.02562 * 10 9 7 29 29 H 1.08002 * 119.91893 * 180.02562 * 11 10 9 30 30 H 0.97006 * 119.99721 * 215.29211 * 13 12 11 31 31 H 0.97008 * 119.99980 * 359.97438 * 16 14 13 32 32 H 1.09000 * 109.46794 * 59.99536 * 17 16 14 33 33 H 1.08994 * 109.47049 * 299.99675 * 17 16 14 34 34 H 1.09006 * 109.47019 * 60.00057 * 18 17 16 35 35 H 1.08994 * 109.47323 * 299.99981 * 18 17 16 36 36 H 1.07994 * 117.96428 * 0.72301 * 20 19 18 37 37 H 1.09003 * 109.35988 * 222.65519 * 21 20 19 38 38 H 1.09001 * 109.36162 * 103.07628 * 21 20 19 39 39 H 1.08991 * 109.64503 * 289.75508 * 22 21 20 40 40 H 1.08997 * 109.64448 * 169.11891 * 22 21 20 41 41 H 1.08992 * 109.64822 * 172.87979 * 23 22 21 42 42 H 1.09004 * 109.64014 * 52.24493 * 23 22 21 43 43 H 1.09002 * 109.35469 * 282.79773 * 24 19 18 44 44 H 1.08998 * 109.35423 * 42.51989 * 24 19 18 45 45 H 1.07997 * 119.91688 * 179.70225 * 25 12 11 46 46 H 1.08002 * 120.08981 * 180.24797 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.7028 1.3464 -0.0006 5 1 1.8840 2.3965 -1.2125 6 1 1.8841 2.3965 1.2124 7 6 2.0083 -1.2115 0.0005 8 1 3.0858 -1.2129 -0.0719 9 6 1.3056 -2.4320 0.0958 10 6 1.8650 -3.5178 0.7976 11 6 1.1805 -4.6941 0.8850 12 6 -0.0702 -4.8237 0.2811 13 7 -0.7628 -6.0282 0.3742 14 6 -0.6810 -6.7674 1.4982 15 8 0.0580 -6.4228 2.4000 16 7 -1.4184 -7.8887 1.6224 17 6 -1.3292 -8.6926 2.8439 18 6 -2.2606 -9.9008 2.7284 19 6 -2.1683 -10.7281 3.9847 20 6 -3.0399 -10.5142 4.9175 21 6 -3.0658 -11.2456 6.2276 22 6 -2.2281 -12.5228 6.1350 23 6 -0.8622 -12.1647 5.5357 24 6 -1.0681 -11.7443 4.0789 25 6 -0.6280 -3.7550 -0.4204 26 6 0.0419 -2.5706 -0.5110 27 1 -0.4850 0.8400 -0.0004 28 1 2.8335 -3.4190 1.2653 29 1 1.6078 -5.5273 1.4230 30 1 -1.3042 -6.3351 -0.3699 31 1 -2.0082 -8.1635 0.9029 32 1 -1.6252 -8.0864 3.7001 33 1 -0.3035 -9.0357 2.9789 34 1 -1.9649 -10.5070 1.8721 35 1 -3.2862 -9.5574 2.5936 36 1 -3.7952 -9.7625 4.7422 37 1 -4.0947 -11.5057 6.4761 38 1 -2.6593 -10.6028 7.0085 39 1 -2.7317 -13.2455 5.4931 40 1 -2.0920 -12.9448 7.1307 41 1 -0.2049 -13.0331 5.5770 42 1 -0.4210 -11.3404 6.0961 43 1 -1.3322 -12.6188 3.4843 44 1 -0.1437 -11.3124 3.6954 45 1 -1.5946 -3.8644 -0.8894 46 1 -0.3929 -1.7425 -1.0511 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078248281.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:33:24 Heat of formation + Delta-G solvation = -14.724522 kcal Electronic energy + Delta-G solvation = -24543.970542 eV Core-core repulsion = 21011.442460 eV Total energy + Delta-G solvation = -3532.528083 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -39.92010 -39.06174 -37.43399 -35.40278 -34.27925 -33.07895 -32.47237 -31.05158 -29.54863 -29.05738 -28.00229 -24.95085 -23.80987 -23.17435 -21.64134 -21.41909 -20.82998 -20.02343 -18.04877 -17.70118 -17.20090 -16.62770 -15.97789 -15.53497 -15.18301 -14.74664 -14.65219 -14.40580 -14.12252 -13.95719 -13.82363 -13.32216 -12.91198 -12.79454 -12.73316 -12.63496 -12.32363 -12.06691 -11.96643 -11.66700 -11.46942 -11.30490 -11.11885 -11.10106 -10.91503 -10.73833 -10.67860 -10.49028 -10.03010 -9.48876 -9.40958 -9.20261 -9.02632 -8.89462 -8.79223 -7.48254 -6.77520 -6.56035 -4.28078 1.94005 2.71200 3.08109 3.12823 3.13626 3.18783 3.22336 3.75559 4.02676 4.34343 4.39521 4.60373 4.69961 4.76303 4.82484 4.89043 5.00743 5.09542 5.10398 5.27752 5.29503 5.40557 5.53945 5.60465 5.64960 5.70329 5.73402 5.81751 5.91257 5.93301 6.01865 6.24550 6.38395 6.49328 6.63859 6.75119 6.82477 6.88735 7.10562 7.21362 7.32850 7.46753 7.71244 7.92415 8.03122 8.15653 8.36879 8.52842 8.69981 8.98748 8.99235 9.15435 10.35329 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.032081 B = 0.001966 C = 0.001942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.581808 B =14238.870323 C =14411.825449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.068 3.932 3 Si 0.914 3.086 4 H -0.262 1.262 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.461 4.461 8 H 0.075 0.925 9 C 0.096 3.904 10 C -0.203 4.203 11 C -0.087 4.087 12 C 0.025 3.975 13 N -0.668 5.668 14 C 0.694 3.306 15 O -0.578 6.578 16 N -0.754 5.754 17 C 0.147 3.853 18 C -0.098 4.098 19 C -0.117 4.117 20 C -0.152 4.152 21 C -0.090 4.090 22 C -0.120 4.120 23 C -0.121 4.121 24 C -0.084 4.084 25 C -0.124 4.124 26 C -0.140 4.140 27 H 0.276 0.724 28 H 0.095 0.905 29 H 0.109 0.891 30 H 0.391 0.609 31 H 0.392 0.608 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.104 0.896 37 H 0.069 0.931 38 H 0.073 0.927 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.064 0.936 42 H 0.066 0.934 43 H 0.072 0.928 44 H 0.074 0.926 45 H 0.090 0.910 46 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.764 -21.535 5.501 23.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C -0.146 4.146 3 Si 0.740 3.260 4 H -0.186 1.186 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.492 4.492 8 H 0.094 0.906 9 C 0.094 3.906 10 C -0.223 4.223 11 C -0.107 4.107 12 C -0.068 4.068 13 N -0.314 5.314 14 C 0.395 3.605 15 O -0.455 6.455 16 N -0.412 5.412 17 C 0.023 3.977 18 C -0.136 4.136 19 C -0.118 4.118 20 C -0.170 4.170 21 C -0.127 4.127 22 C -0.158 4.158 23 C -0.159 4.159 24 C -0.121 4.121 25 C -0.145 4.145 26 C -0.160 4.160 27 H 0.087 0.913 28 H 0.114 0.886 29 H 0.126 0.874 30 H 0.224 0.776 31 H 0.225 0.775 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.122 0.878 37 H 0.088 0.912 38 H 0.092 0.908 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.083 0.917 42 H 0.085 0.915 43 H 0.090 0.910 44 H 0.092 0.908 45 H 0.108 0.892 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -7.273 -21.043 6.362 23.156 hybrid contribution -0.421 0.588 -0.612 0.948 sum -7.695 -20.456 5.750 22.599 Atomic orbital electron populations 1.69776 1.07246 1.28455 1.38712 1.25866 0.94935 1.01107 0.92671 0.86162 0.80594 0.80963 0.78314 1.18627 1.20074 1.20053 1.19509 0.94706 0.90207 1.44827 0.90633 1.17727 0.92353 0.92049 0.88476 1.20811 1.01176 0.94943 1.05417 1.20429 0.92796 0.97953 0.99570 1.17086 0.93717 0.85032 1.10966 1.42124 1.51734 1.22170 1.15383 1.16028 0.81312 0.80078 0.83124 1.90910 1.42205 1.71479 1.40861 1.45137 1.48463 1.26754 1.20804 1.21054 0.99584 0.90407 0.86692 1.20943 1.00311 0.95603 0.96756 1.20635 0.97366 0.98082 0.95671 1.21964 0.99431 1.00311 0.95332 1.20435 1.00292 0.96274 0.95716 1.21603 0.96024 0.97317 1.00851 1.21614 0.97114 1.01309 0.95859 1.20409 0.97208 0.97348 0.97144 1.20292 0.98380 0.93068 1.02729 1.21171 0.97305 0.95439 1.02100 0.91309 0.88643 0.87357 0.77580 0.77540 0.91766 0.91776 0.90755 0.90839 0.87832 0.91235 0.90831 0.91861 0.91826 0.91689 0.91531 0.90970 0.90786 0.89178 0.85052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.59 10.60 55.54 0.59 -21.01 16 2 C 0.07 1.77 5.42 -17.34 -0.09 1.68 16 3 Si 0.91 19.39 29.56 -169.99 -5.03 14.36 16 4 H -0.26 -5.50 7.11 56.52 0.40 -5.09 16 5 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 6 H -0.28 -5.80 7.11 56.52 0.40 -5.39 16 7 C -0.46 -12.56 9.02 -37.86 -0.34 -12.90 16 8 H 0.08 1.98 7.85 -52.49 -0.41 1.57 16 9 C 0.10 2.64 5.55 -106.80 -0.59 2.05 16 10 C -0.20 -5.30 9.74 -39.26 -0.38 -5.68 16 11 C -0.09 -2.16 8.61 -39.79 -0.34 -2.51 16 12 C 0.02 0.56 6.31 -83.57 -0.53 0.04 16 13 N -0.67 -12.10 5.31 -14.10 -0.07 -12.18 16 14 C 0.69 12.74 8.40 -86.92 -0.73 12.01 16 15 O -0.58 -13.28 13.76 5.29 0.07 -13.21 16 16 N -0.75 -9.71 5.56 -65.23 -0.36 -10.07 16 17 C 0.15 1.72 5.66 -4.04 -0.02 1.70 16 18 C -0.10 -0.81 5.34 -27.88 -0.15 -0.96 16 19 C -0.12 -0.98 5.09 -100.94 -0.51 -1.49 16 20 C -0.15 -1.26 9.37 -35.90 -0.34 -1.60 16 21 C -0.09 -0.64 6.11 -28.18 -0.17 -0.81 16 22 C -0.12 -0.78 6.01 -26.52 -0.16 -0.94 16 23 C -0.12 -0.86 6.01 -26.51 -0.16 -1.02 16 24 C -0.08 -0.64 5.80 -28.18 -0.16 -0.80 16 25 C -0.12 -2.89 9.90 -39.79 -0.39 -3.28 16 26 C -0.14 -3.67 8.61 -39.26 -0.34 -4.01 16 27 H 0.28 6.69 8.30 -40.82 -0.34 6.35 16 28 H 0.10 2.36 8.06 -52.48 -0.42 1.94 16 29 H 0.11 2.68 6.22 -52.49 -0.33 2.36 16 30 H 0.39 5.47 8.83 -40.82 -0.36 5.11 16 31 H 0.39 3.68 8.49 -40.82 -0.35 3.34 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.06 0.82 8.11 -51.93 -0.42 0.40 16 34 H 0.07 0.54 8.11 -51.93 -0.42 0.12 16 35 H 0.07 0.56 7.80 -51.93 -0.41 0.15 16 36 H 0.10 0.84 7.74 -52.49 -0.41 0.43 16 37 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.40 8.12 -51.93 -0.42 -0.02 16 40 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 42 H 0.07 0.52 8.12 -51.93 -0.42 0.10 16 43 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 44 H 0.07 0.59 8.11 -51.93 -0.42 0.16 16 45 H 0.09 1.83 8.06 -52.49 -0.42 1.40 16 46 H 0.13 3.54 6.13 -52.49 -0.32 3.22 16 LS Contribution 373.97 15.07 5.64 5.64 Total: -1.00 -31.81 373.97 -11.79 -43.60 By element: Atomic # 1 Polarization: 18.59 SS G_CDS: -7.20 Total: 11.39 kcal Atomic # 6 Polarization: -13.11 SS G_CDS: -5.42 Total: -18.53 kcal Atomic # 7 Polarization: -43.40 SS G_CDS: 0.15 Total: -43.25 kcal Atomic # 8 Polarization: -13.28 SS G_CDS: 0.07 Total: -13.21 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -5.03 Total: 14.36 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.81 -11.79 -43.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078248281.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.873 kcal (2) G-P(sol) polarization free energy of solvation -31.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds