Wall clock time and date at job start Tue Mar 31 2020 11:10:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86804 * 119.99819 * 2 1 4 4 H 1.48503 * 109.46867 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47052 * 299.99512 * 3 2 1 6 6 H 1.48494 * 109.47273 * 59.99621 * 3 2 1 7 7 C 1.38804 * 119.99976 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00039 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00218 * 0.27927 * 7 2 1 10 10 C 1.47430 * 125.64727 * 14.48360 * 9 7 2 11 11 C 1.54902 * 104.83203 * 155.83488 * 10 9 7 12 12 C 1.55157 * 101.58300 * 37.00903 * 11 10 9 13 13 C 1.47023 * 125.65080 * 194.17039 * 9 7 2 14 14 H 1.08996 * 109.88406 * 300.51652 * 13 9 7 15 15 C 1.53000 * 109.87799 * 61.68114 * 13 9 7 16 16 N 1.46499 * 109.47117 * 183.74446 * 15 13 9 17 17 C 1.34779 * 120.00119 * 185.65804 * 16 15 13 18 18 O 1.21280 * 120.00077 * 0.02562 * 17 16 15 19 19 C 1.50704 * 119.99855 * 180.02562 * 17 16 15 20 20 H 1.09000 * 115.54943 * 34.33318 * 19 17 16 21 21 C 1.53003 * 117.49804 * 248.62652 * 19 17 16 22 22 C 1.52996 * 117.49880 * 180.02562 * 19 17 16 23 23 H 1.09007 * 117.49862 * 0.02562 * 22 19 17 24 24 C 1.50698 * 117.50186 * 215.00296 * 22 19 17 25 25 C 1.38238 * 119.99811 * 299.72595 * 24 22 19 26 26 C 1.38232 * 119.99545 * 179.76334 * 25 24 22 27 27 C 1.38236 * 120.00238 * 0.50581 * 26 25 24 28 28 C 1.38237 * 120.00080 * 359.75051 * 27 26 25 29 29 C 1.38230 * 119.99501 * 359.97438 * 28 27 26 30 30 H 0.97003 * 120.00202 * 0.02562 * 1 2 3 31 31 H 1.09001 * 110.36454 * 274.67504 * 10 9 7 32 32 H 1.08997 * 110.36740 * 36.88102 * 10 9 7 33 33 H 1.09002 * 111.00595 * 155.07749 * 11 10 9 34 34 H 1.08995 * 111.00843 * 278.89194 * 11 10 9 35 35 H 1.08998 * 110.72179 * 82.86464 * 12 11 10 36 36 H 1.09004 * 110.72060 * 205.95735 * 12 11 10 37 37 H 1.08996 * 109.47337 * 303.74909 * 15 13 9 38 38 H 1.09004 * 109.47383 * 63.75004 * 15 13 9 39 39 H 0.97003 * 119.99997 * 5.66957 * 16 15 13 40 40 H 1.09004 * 117.49975 * 359.97438 * 21 19 17 41 41 H 1.08996 * 117.50096 * 145.02390 * 21 19 17 42 42 H 1.07994 * 119.99912 * 0.02562 * 25 24 22 43 43 H 1.08004 * 119.99680 * 180.23420 * 26 25 24 44 44 H 1.08001 * 119.99903 * 179.71877 * 27 26 25 45 45 H 1.07996 * 119.99648 * 179.97438 * 28 27 26 46 46 H 1.08009 * 119.99382 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8913 2.3965 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3880 -0.0047 10 6 -0.1073 -2.5515 -0.3107 11 6 -0.2457 -4.0183 -0.7892 12 6 0.7645 -4.7449 0.1376 13 6 1.8991 -3.7098 0.2875 14 1 2.7004 -3.9304 -0.4176 15 6 2.4392 -3.7377 1.7188 16 7 3.0877 -5.0269 1.9710 17 6 3.5390 -5.3241 3.2057 18 8 3.4079 -4.5244 4.1080 19 6 4.2066 -6.6501 3.4649 20 1 4.8005 -7.0464 2.6413 21 6 3.4634 -7.6545 4.3480 22 6 4.6968 -6.9281 4.8874 23 1 4.5359 -6.1520 5.6358 24 6 5.9640 -7.7287 5.0428 25 6 6.0337 -9.0161 4.5440 26 6 7.1978 -9.7486 4.6823 27 6 8.2886 -9.1977 5.3284 28 6 8.2171 -7.9122 5.8318 29 6 7.0549 -7.1776 5.6885 30 1 -0.4850 0.8400 -0.0004 31 1 -0.7075 -2.3861 0.5840 32 1 -0.4075 -1.8631 -1.1006 33 1 -1.2586 -4.3877 -0.6287 34 1 0.0426 -4.1168 -1.8357 35 1 0.3107 -4.9679 1.1032 36 1 1.1332 -5.6563 -0.3332 37 1 3.1644 -2.9345 1.8491 38 1 1.6162 -3.6016 2.4205 39 1 3.1924 -5.6665 1.2493 40 1 2.4918 -7.3561 4.7418 41 1 3.5682 -8.7119 4.1054 42 1 5.1802 -9.4479 4.0427 43 1 7.2536 -10.7531 4.2893 44 1 9.1965 -9.7717 5.4404 45 1 9.0692 -7.4820 6.3369 46 1 6.9989 -6.1734 6.0822 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028271721.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:55 Heat of formation + Delta-G solvation = 32.490417 kcal Electronic energy + Delta-G solvation = -25135.808649 eV Core-core repulsion = 21605.327960 eV Total energy + Delta-G solvation = -3530.480689 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.29242 -39.17232 -37.73889 -36.35605 -34.20504 -32.48594 -31.21444 -30.84743 -29.69377 -28.74442 -25.43885 -24.49310 -24.03578 -23.03060 -22.52124 -20.67083 -20.30400 -19.96317 -19.33841 -17.69955 -17.09246 -16.52846 -15.87959 -15.35481 -15.25503 -14.95234 -14.75925 -14.49001 -14.16628 -13.88074 -13.64493 -13.48952 -13.14486 -13.02267 -12.56709 -12.15270 -12.09531 -11.90158 -11.75599 -11.54045 -11.32505 -11.25211 -10.96180 -10.86861 -10.80865 -10.61043 -10.24691 -10.09422 -9.95293 -9.85541 -9.74281 -9.59489 -9.17385 -8.80396 -8.66863 -8.57502 -6.84952 -5.77710 -3.14332 1.04123 1.15053 2.66729 3.29391 3.39342 3.45583 3.47476 3.51939 3.90240 4.35829 4.48571 4.55603 4.63550 4.73446 4.75576 4.86515 5.01255 5.09645 5.23165 5.32792 5.34824 5.39884 5.45839 5.52157 5.61380 5.71375 5.74957 5.80167 5.81367 5.91146 6.05386 6.13047 6.22865 6.23929 6.26492 6.40883 6.44817 6.53882 6.62282 6.70845 6.74255 6.81275 7.05538 7.50700 7.60198 7.78425 7.80728 8.24541 8.49998 9.16527 9.77121 10.44289 11.34386 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.019249 B = 0.002535 C = 0.002334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.296652 B =11043.230670 C =11995.096916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.002 4.002 3 Si 0.911 3.089 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.233 4.233 8 H 0.076 0.924 9 N -0.589 5.589 10 C 0.172 3.828 11 C -0.149 4.149 12 C -0.125 4.125 13 C 0.152 3.848 14 H 0.037 0.963 15 C 0.109 3.891 16 N -0.718 5.718 17 C 0.535 3.465 18 O -0.543 6.543 19 C -0.174 4.174 20 H 0.123 0.877 21 C -0.145 4.145 22 C -0.087 4.087 23 H 0.127 0.873 24 C -0.049 4.049 25 C -0.121 4.121 26 C -0.119 4.119 27 C -0.127 4.127 28 C -0.118 4.118 29 C -0.109 4.109 30 H 0.253 0.747 31 H 0.026 0.974 32 H 0.072 0.928 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.063 0.937 36 H 0.057 0.943 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.396 0.604 40 H 0.105 0.895 41 H 0.107 0.893 42 H 0.124 0.876 43 H 0.121 0.879 44 H 0.120 0.880 45 H 0.122 0.878 46 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.501 -21.144 6.820 24.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.199 4.199 3 Si 0.741 3.259 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.216 1.216 7 C -0.361 4.361 8 H 0.094 0.906 9 N -0.314 5.314 10 C 0.047 3.953 11 C -0.188 4.188 12 C -0.163 4.163 13 C 0.044 3.956 14 H 0.055 0.945 15 C -0.016 4.016 16 N -0.368 5.368 17 C 0.321 3.679 18 O -0.421 6.421 19 C -0.195 4.195 20 H 0.141 0.859 21 C -0.182 4.182 22 C -0.106 4.106 23 H 0.145 0.855 24 C -0.050 4.050 25 C -0.139 4.139 26 C -0.137 4.137 27 C -0.145 4.145 28 C -0.136 4.136 29 C -0.127 4.127 30 H 0.064 0.936 31 H 0.044 0.956 32 H 0.091 0.909 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.229 0.771 40 H 0.123 0.877 41 H 0.125 0.875 42 H 0.142 0.858 43 H 0.139 0.861 44 H 0.138 0.862 45 H 0.140 0.860 46 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 10.321 -20.268 7.432 23.928 hybrid contribution 0.556 0.643 -0.331 0.912 sum 10.876 -19.625 7.101 23.534 Atomic orbital electron populations 1.69947 1.05019 1.25209 1.55967 1.24912 0.95689 0.97889 1.01416 0.86070 0.78938 0.83659 0.77261 1.20359 1.21700 1.21585 1.19027 0.90410 0.82176 1.44536 0.90615 1.44489 1.06396 1.00847 1.79628 1.21459 0.84807 0.90217 0.98814 1.23008 0.97585 0.99610 0.98564 1.22595 0.97088 0.96930 0.99708 1.21122 0.94494 0.88047 0.91975 0.94510 1.22246 0.97064 0.82947 0.99341 1.46056 1.59955 1.20319 1.10456 1.19555 0.78429 0.87036 0.82911 1.90706 1.57198 1.50148 1.43999 1.22382 1.04872 0.96415 0.95841 0.85902 1.23112 0.96743 0.97116 1.01258 1.21075 0.92130 1.01214 0.96167 0.85511 1.19171 0.93935 0.93850 0.97996 1.21084 0.98224 0.94128 1.00434 1.21122 0.93297 0.99861 0.99385 1.21162 0.98664 0.95765 0.98876 1.21159 0.97853 0.94680 0.99902 1.21057 0.92664 1.00059 0.98966 0.93642 0.95601 0.90941 0.92346 0.92305 0.91842 0.92421 0.91538 0.91610 0.77052 0.87657 0.87531 0.85818 0.86078 0.86207 0.85992 0.85749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.70 10.57 55.49 0.59 -26.12 16 2 C 0.00 -0.05 5.47 -17.43 -0.10 -0.15 16 3 Si 0.91 22.19 29.55 -169.99 -5.02 17.17 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 6 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 7 C -0.23 -6.40 9.74 -15.06 -0.15 -6.55 16 8 H 0.08 2.04 7.83 -52.48 -0.41 1.63 16 9 N -0.59 -14.62 3.13 -162.58 -0.51 -15.13 16 10 C 0.17 4.09 5.42 -2.53 -0.01 4.08 16 11 C -0.15 -2.71 7.08 -24.59 -0.17 -2.89 16 12 C -0.13 -2.07 6.16 -24.90 -0.15 -2.22 16 13 C 0.15 2.99 3.20 -66.96 -0.21 2.77 16 14 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 15 C 0.11 2.11 5.09 -4.04 -0.02 2.09 16 16 N -0.72 -10.76 5.34 -60.29 -0.32 -11.08 16 17 C 0.54 8.34 7.61 -10.98 -0.08 8.26 16 18 O -0.54 -10.86 16.25 5.56 0.09 -10.77 16 19 C -0.17 -1.95 5.83 -91.77 -0.53 -2.48 16 20 H 0.12 1.15 8.14 -51.93 -0.42 0.73 16 21 C -0.15 -1.35 9.56 -26.75 -0.26 -1.61 16 22 C -0.09 -0.95 5.55 -91.80 -0.51 -1.46 16 23 H 0.13 1.59 7.67 -51.92 -0.40 1.19 16 24 C -0.05 -0.50 5.61 -104.62 -0.59 -1.09 16 25 C -0.12 -1.05 9.30 -39.58 -0.37 -1.41 16 26 C -0.12 -0.94 10.05 -39.58 -0.40 -1.34 16 27 C -0.13 -1.00 10.05 -39.58 -0.40 -1.40 16 28 C -0.12 -1.01 10.05 -39.58 -0.40 -1.41 16 29 C -0.11 -1.08 9.74 -39.59 -0.39 -1.47 16 30 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 31 H 0.03 0.67 8.06 -51.93 -0.42 0.25 16 32 H 0.07 1.92 6.92 -51.93 -0.36 1.56 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.06 1.05 7.79 -51.93 -0.40 0.64 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.07 1.47 7.88 -51.93 -0.41 1.06 16 38 H 0.07 1.43 8.04 -51.93 -0.42 1.01 16 39 H 0.40 4.67 8.39 -40.82 -0.34 4.33 16 40 H 0.11 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.11 0.74 6.17 -51.93 -0.32 0.42 16 42 H 0.12 0.85 6.02 -52.49 -0.32 0.54 16 43 H 0.12 0.70 8.06 -52.48 -0.42 0.27 16 44 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 45 H 0.12 0.81 8.06 -52.49 -0.42 0.38 16 46 H 0.12 1.16 8.06 -52.48 -0.42 0.74 16 LS Contribution 375.83 15.07 5.66 5.66 Total: -1.00 -32.48 375.83 -11.41 -43.89 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -7.16 Total: 4.64 kcal Atomic # 6 Polarization: -3.53 SS G_CDS: -4.74 Total: -8.26 kcal Atomic # 7 Polarization: -52.08 SS G_CDS: -0.24 Total: -52.33 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: 0.09 Total: -10.77 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.48 -11.41 -43.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028271721.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.375 kcal (2) G-P(sol) polarization free energy of solvation -32.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.885 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds