Wall clock time and date at job start Tue Mar 31 2020 11:08:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86799 * 119.99673 * 2 1 4 4 H 1.48502 * 109.47024 * 270.00220 * 3 2 1 5 5 H 1.48501 * 109.47207 * 29.99749 * 3 2 1 6 6 H 1.48497 * 109.47355 * 150.00005 * 3 2 1 7 7 C 1.38800 * 120.00267 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99955 * 0.02562 * 7 2 1 9 9 S 1.76199 * 120.00089 * 180.27383 * 7 2 1 10 10 C 1.80996 * 100.00121 * 179.72618 * 9 7 2 11 11 C 1.53003 * 109.47100 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47148 * 179.97438 * 11 10 9 13 13 N 1.46896 * 109.47445 * 179.97438 * 12 11 10 14 14 C 1.46954 * 110.99823 * 293.80588 * 13 12 11 15 15 C 1.53051 * 109.36482 * 176.81019 * 14 13 12 16 16 N 1.46957 * 109.36716 * 58.39477 * 15 14 13 17 17 C 1.46896 * 111.00461 * 176.81246 * 16 15 14 18 18 C 1.53001 * 109.46960 * 48.55251 * 17 16 15 19 19 H 1.09006 * 110.33075 * 307.98508 * 18 17 16 20 20 C 1.54477 * 110.37430 * 185.73679 * 18 17 16 21 21 C 1.54507 * 104.06568 * 217.18932 * 20 18 17 22 22 C 1.54484 * 104.05963 * 359.97438 * 21 20 18 23 23 O 1.44427 * 110.37320 * 70.23751 * 18 17 16 24 24 C 1.46964 * 110.88030 * 300.68449 * 16 15 14 25 25 C 1.46951 * 111.00174 * 169.99946 * 13 12 11 26 26 H 0.96999 * 120.00119 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.47249 * 300.00043 * 10 9 7 28 28 H 1.09001 * 109.47294 * 60.00074 * 10 9 7 29 29 H 1.09000 * 109.47143 * 300.00154 * 11 10 9 30 30 H 1.09001 * 109.46948 * 59.99909 * 11 10 9 31 31 H 1.09001 * 109.46895 * 300.00514 * 12 11 10 32 32 H 1.09003 * 109.46821 * 59.99786 * 12 11 10 33 33 H 1.09000 * 109.48603 * 296.77263 * 14 13 12 34 34 H 1.08995 * 109.49355 * 56.83759 * 14 13 12 35 35 H 1.09000 * 109.48795 * 298.42752 * 15 14 13 36 36 H 1.08998 * 109.50947 * 178.37532 * 15 14 13 37 37 H 1.08992 * 109.47484 * 168.55034 * 17 16 15 38 38 H 1.08994 * 109.47505 * 288.55498 * 17 16 15 39 39 H 1.08996 * 110.51200 * 335.83574 * 20 18 17 40 40 H 1.09002 * 110.50842 * 98.54285 * 20 18 17 41 41 H 1.08993 * 110.51165 * 118.64088 * 21 20 18 42 42 H 1.09002 * 110.51013 * 241.35599 * 21 20 18 43 43 H 1.09010 * 110.36722 * 142.80973 * 22 21 20 44 44 H 1.08998 * 110.37365 * 265.03220 * 22 21 20 45 45 H 1.09000 * 109.48745 * 299.35078 * 24 16 15 46 46 H 1.08999 * 109.50821 * 179.29774 * 24 16 15 47 47 H 1.08996 * 109.49078 * 303.15418 * 25 13 12 48 48 H 1.09000 * 109.49144 * 63.20216 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4404 0.7000 7 6 2.0104 -1.2020 0.0005 8 1 1.4704 -2.1373 0.0005 9 16 3.7724 -1.2020 0.0078 10 6 4.0867 -2.9844 0.0142 11 6 5.5959 -3.2361 0.0205 12 6 5.8617 -4.7428 0.0265 13 7 7.3106 -4.9845 0.0320 14 6 7.9251 -4.5293 -1.2229 15 6 9.4411 -4.7250 -1.1458 16 7 9.7376 -6.1435 -0.9017 17 6 11.1865 -6.3852 -0.8963 18 6 11.8723 -5.3533 0.0014 19 1 11.5682 -4.3450 -0.2798 20 6 13.4077 -5.4970 -0.0897 21 6 13.8967 -5.2208 1.3496 22 6 12.5990 -4.9422 2.1400 23 8 11.5574 -5.6050 1.3883 24 6 9.1230 -6.5987 0.3532 25 6 7.6070 -6.4030 0.2760 26 1 -0.4850 0.8400 -0.0004 27 1 3.6401 -3.4290 0.9036 28 1 3.6475 -3.4340 -0.8764 29 1 6.0421 -2.7916 -0.8691 30 1 6.0355 -2.7864 0.9108 31 1 5.4154 -5.1869 0.9164 32 1 5.4219 -5.1928 -0.8636 33 1 7.5255 -5.1092 -2.0548 34 1 7.7020 -3.4733 -1.3750 35 1 9.8444 -4.1237 -0.3309 36 1 9.8965 -4.4149 -2.0863 37 1 11.3863 -7.3870 -0.5164 38 1 11.5733 -6.2977 -1.9115 39 1 13.6791 -6.5065 -0.3982 40 1 13.8197 -4.7617 -0.7808 41 1 14.4099 -6.0938 1.7528 42 1 14.5506 -4.3489 1.3701 43 1 12.6684 -5.3620 3.1436 44 1 12.4080 -3.8702 2.1903 45 1 9.5226 -6.0188 1.1851 46 1 9.3460 -7.6546 0.5057 47 1 7.1520 -6.7129 1.2167 48 1 7.2034 -7.0043 -0.5387 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074980647.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:21 Heat of formation + Delta-G solvation = -45.424338 kcal Electronic energy + Delta-G solvation = -24248.223757 eV Core-core repulsion = 20849.808382 eV Total energy + Delta-G solvation = -3398.415375 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.177 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.34894 -38.91186 -36.18000 -33.06127 -32.48072 -32.40607 -31.00070 -30.36839 -27.59854 -25.73499 -25.02444 -23.94091 -23.53560 -22.00665 -21.54211 -20.77955 -19.56478 -17.45548 -17.07645 -16.48592 -15.98108 -15.84051 -15.25750 -15.11145 -14.97352 -14.84233 -14.61063 -14.23090 -14.11354 -13.84193 -13.54276 -12.84668 -12.66650 -12.56084 -12.43324 -12.23807 -12.12667 -11.89048 -11.61774 -11.55769 -11.40910 -11.36352 -11.13599 -11.02793 -10.98381 -10.91102 -10.76640 -10.28876 -10.07145 -10.05699 -9.72959 -8.97988 -8.52765 -8.50018 -8.24776 -6.90657 -6.25707 -3.97470 3.03754 3.31905 3.40717 3.47885 3.58303 3.81438 3.95002 4.16493 4.29422 4.34238 4.48691 4.63754 4.75075 4.80660 4.84975 4.93245 5.00154 5.07032 5.12935 5.16528 5.21023 5.27972 5.33506 5.37668 5.39123 5.40518 5.44860 5.47469 5.58059 5.61270 5.67345 5.68840 5.73289 5.82541 5.86749 5.92182 6.05764 6.10641 6.29482 6.46931 6.54016 6.68914 6.80046 6.84177 7.11698 7.14082 7.98147 8.47214 9.20286 10.83796 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.023880 B = 0.002270 C = 0.002166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.249136 B =12329.885431 C =12923.637820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.090 3.910 3 Si 0.862 3.138 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.237 1.237 7 C -0.501 4.501 8 H 0.088 0.912 9 S -0.216 6.216 10 C -0.081 4.081 11 C -0.096 4.096 12 C 0.061 3.939 13 N -0.538 5.538 14 C 0.054 3.946 15 C 0.053 3.947 16 N -0.536 5.536 17 C 0.062 3.938 18 C 0.034 3.966 19 H 0.075 0.925 20 C -0.148 4.148 21 C -0.155 4.155 22 C 0.042 3.958 23 O -0.363 6.363 24 C 0.055 3.945 25 C 0.057 3.943 26 H 0.270 0.730 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.034 0.966 33 H 0.040 0.960 34 H 0.085 0.915 35 H 0.049 0.951 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.088 0.912 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.074 0.926 42 H 0.075 0.925 43 H 0.090 0.910 44 H 0.058 0.942 45 H 0.067 0.933 46 H 0.072 0.928 47 H 0.077 0.923 48 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.788 -13.893 -0.085 31.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.118 4.118 3 Si 0.687 3.313 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.161 1.161 7 C -0.648 4.648 8 H 0.106 0.894 9 S 0.011 5.989 10 C -0.230 4.230 11 C -0.135 4.135 12 C -0.068 4.068 13 N -0.263 5.263 14 C -0.074 4.074 15 C -0.075 4.075 16 N -0.259 5.259 17 C -0.066 4.066 18 C -0.025 4.025 19 H 0.093 0.907 20 C -0.186 4.186 21 C -0.192 4.192 22 C -0.035 4.035 23 O -0.282 6.282 24 C -0.073 4.073 25 C -0.072 4.072 26 H 0.080 0.920 27 H 0.086 0.914 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.052 0.948 33 H 0.058 0.942 34 H 0.103 0.897 35 H 0.068 0.932 36 H 0.094 0.906 37 H 0.100 0.900 38 H 0.106 0.894 39 H 0.095 0.905 40 H 0.094 0.906 41 H 0.092 0.908 42 H 0.093 0.907 43 H 0.108 0.892 44 H 0.077 0.923 45 H 0.085 0.915 46 H 0.090 0.910 47 H 0.096 0.904 48 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 29.120 -13.045 -0.004 31.909 hybrid contribution -0.567 -0.062 -0.094 0.578 sum 28.553 -13.107 -0.097 31.418 Atomic orbital electron populations 1.69943 1.05917 1.27660 1.48442 1.24808 0.94521 0.99026 0.93408 0.86661 0.81780 0.83192 0.79657 1.19424 1.20155 1.16121 1.22134 0.87153 0.97382 1.58175 0.89447 1.84140 1.11590 1.05599 1.97522 1.23016 0.97450 0.99004 1.03576 1.21329 0.94697 0.94364 1.03102 1.22140 0.86619 0.97204 1.00858 1.62125 1.11813 1.17981 1.34346 1.22201 0.93408 1.01148 0.90635 1.22238 0.96074 0.88424 1.00793 1.62377 1.09751 1.18727 1.35027 1.22352 0.87233 0.98495 0.98551 1.23912 0.94287 1.00459 0.83888 0.90716 1.22937 0.95522 1.02888 0.97303 1.22920 0.98443 1.02461 0.95425 1.23429 0.86243 0.97527 0.96316 1.89230 1.47794 1.74780 1.16421 1.22285 0.93513 1.00328 0.91193 1.22159 0.95665 0.88501 1.00829 0.92020 0.91398 0.91657 0.91664 0.90768 0.90732 0.94801 0.94189 0.89697 0.93250 0.90642 0.90049 0.89359 0.90548 0.90601 0.90760 0.90659 0.89219 0.92335 0.91468 0.90979 0.90449 0.94467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -27.09 13.97 55.49 0.78 -26.32 16 2 C 0.09 2.68 5.50 -17.43 -0.10 2.58 16 3 Si 0.86 21.83 27.74 -169.99 -4.72 17.11 16 4 H -0.27 -6.72 7.11 56.52 0.40 -6.31 16 5 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.24 -5.89 6.73 56.52 0.38 -5.51 16 7 C -0.50 -14.76 10.04 30.94 0.31 -14.45 16 8 H 0.09 2.74 8.03 -52.49 -0.42 2.32 16 9 S -0.22 -5.38 19.41 -107.50 -2.09 -7.46 16 10 C -0.08 -1.62 5.67 37.16 0.21 -1.41 16 11 C -0.10 -1.54 5.15 -26.73 -0.14 -1.68 16 12 C 0.06 0.83 4.96 -3.83 -0.02 0.82 16 13 N -0.54 -6.87 4.71 -234.48 -1.10 -7.97 16 14 C 0.05 0.64 5.41 -3.77 -0.02 0.62 16 15 C 0.05 0.54 4.78 -3.77 -0.02 0.52 16 16 N -0.54 -5.34 4.92 -234.47 -1.15 -6.49 16 17 C 0.06 0.49 5.21 -3.83 -0.02 0.47 16 18 C 0.03 0.26 2.74 -25.96 -0.07 0.19 16 19 H 0.08 0.63 5.95 -51.93 -0.31 0.32 16 20 C -0.15 -0.86 6.63 -25.17 -0.17 -1.02 16 21 C -0.15 -0.87 7.09 -25.16 -0.18 -1.05 16 22 C 0.04 0.30 7.63 37.94 0.29 0.59 16 23 O -0.36 -3.51 8.80 -35.23 -0.31 -3.82 16 24 C 0.05 0.58 5.19 -3.76 -0.02 0.56 16 25 C 0.06 0.64 5.61 -3.77 -0.02 0.62 16 26 H 0.27 7.68 8.31 -40.82 -0.34 7.34 16 27 H 0.07 1.35 8.14 -51.92 -0.42 0.93 16 28 H 0.06 1.30 8.14 -51.92 -0.42 0.88 16 29 H 0.06 1.04 6.49 -51.93 -0.34 0.70 16 30 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.07 1.00 8.03 -51.93 -0.42 0.58 16 32 H 0.03 0.47 8.12 -51.93 -0.42 0.04 16 33 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.08 1.03 6.34 -51.93 -0.33 0.70 16 35 H 0.05 0.55 6.24 -51.93 -0.32 0.23 16 36 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.08 0.63 7.93 -51.93 -0.41 0.22 16 38 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.08 0.40 7.87 -51.93 -0.41 -0.01 16 40 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.09 0.57 8.14 -51.92 -0.42 0.15 16 44 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.07 0.82 5.85 -51.93 -0.30 0.51 16 46 H 0.07 0.70 8.03 -51.93 -0.42 0.28 16 47 H 0.08 0.83 8.07 -51.93 -0.42 0.41 16 48 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 375.06 15.07 5.65 5.65 Total: -1.00 -31.75 375.06 -11.65 -43.40 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -8.75 Total: -1.47 kcal Atomic # 6 Polarization: -12.68 SS G_CDS: 0.04 Total: -12.63 kcal Atomic # 7 Polarization: -39.29 SS G_CDS: -1.48 Total: -40.78 kcal Atomic # 8 Polarization: -3.51 SS G_CDS: -0.31 Total: -3.82 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.72 Total: 17.11 kcal Atomic # 16 Polarization: -5.38 SS G_CDS: -2.09 Total: -7.46 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.75 -11.65 -43.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074980647.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.024 kcal (2) G-P(sol) polarization free energy of solvation -31.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds