Wall clock time and date at job start Tue Mar 31 2020 11:08:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86799 * 119.99673 * 2 1 4 4 H 1.48502 * 109.47024 * 270.00220 * 3 2 1 5 5 H 1.48501 * 109.47207 * 29.99749 * 3 2 1 6 6 H 1.48497 * 109.47355 * 150.00005 * 3 2 1 7 7 C 1.38800 * 120.00267 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99955 * 0.02562 * 7 2 1 9 9 S 1.76199 * 120.00089 * 180.27383 * 7 2 1 10 10 C 1.80996 * 100.00121 * 179.72618 * 9 7 2 11 11 C 1.53003 * 109.47100 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47148 * 179.97438 * 11 10 9 13 13 N 1.46896 * 109.47445 * 179.97438 * 12 11 10 14 14 C 1.46954 * 110.99823 * 293.80588 * 13 12 11 15 15 C 1.53051 * 109.36482 * 176.81019 * 14 13 12 16 16 N 1.46957 * 109.36716 * 58.39477 * 15 14 13 17 17 C 1.46896 * 111.00461 * 176.81246 * 16 15 14 18 18 C 1.53001 * 109.46960 * 48.55251 * 17 16 15 19 19 H 1.09006 * 110.33075 * 307.98508 * 18 17 16 20 20 C 1.54477 * 110.37430 * 185.73679 * 18 17 16 21 21 C 1.54507 * 104.06568 * 217.18932 * 20 18 17 22 22 C 1.54484 * 104.05963 * 359.97438 * 21 20 18 23 23 O 1.44427 * 110.37320 * 70.23751 * 18 17 16 24 24 C 1.46964 * 110.88030 * 300.68449 * 16 15 14 25 25 C 1.46951 * 111.00174 * 169.99946 * 13 12 11 26 26 H 0.96999 * 120.00119 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.47249 * 300.00043 * 10 9 7 28 28 H 1.09001 * 109.47294 * 60.00074 * 10 9 7 29 29 H 1.09000 * 109.47143 * 300.00154 * 11 10 9 30 30 H 1.09001 * 109.46948 * 59.99909 * 11 10 9 31 31 H 1.09001 * 109.46895 * 300.00514 * 12 11 10 32 32 H 1.09003 * 109.46821 * 59.99786 * 12 11 10 33 33 H 1.09000 * 109.48603 * 296.77263 * 14 13 12 34 34 H 1.08995 * 109.49355 * 56.83759 * 14 13 12 35 35 H 1.09000 * 109.48795 * 298.42752 * 15 14 13 36 36 H 1.08998 * 109.50947 * 178.37532 * 15 14 13 37 37 H 1.08992 * 109.47484 * 168.55034 * 17 16 15 38 38 H 1.08994 * 109.47505 * 288.55498 * 17 16 15 39 39 H 1.08996 * 110.51200 * 335.83574 * 20 18 17 40 40 H 1.09002 * 110.50842 * 98.54285 * 20 18 17 41 41 H 1.08993 * 110.51165 * 118.64088 * 21 20 18 42 42 H 1.09002 * 110.51013 * 241.35599 * 21 20 18 43 43 H 1.09010 * 110.36722 * 142.80973 * 22 21 20 44 44 H 1.08998 * 110.37365 * 265.03220 * 22 21 20 45 45 H 1.09000 * 109.48745 * 299.35078 * 24 16 15 46 46 H 1.08999 * 109.50821 * 179.29774 * 24 16 15 47 47 H 1.08996 * 109.49078 * 303.15418 * 25 13 12 48 48 H 1.09000 * 109.49144 * 63.20216 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4404 0.7000 7 6 2.0104 -1.2020 0.0005 8 1 1.4704 -2.1373 0.0005 9 16 3.7724 -1.2020 0.0078 10 6 4.0867 -2.9844 0.0142 11 6 5.5959 -3.2361 0.0205 12 6 5.8617 -4.7428 0.0265 13 7 7.3106 -4.9845 0.0320 14 6 7.9251 -4.5293 -1.2229 15 6 9.4411 -4.7250 -1.1458 16 7 9.7376 -6.1435 -0.9017 17 6 11.1865 -6.3852 -0.8963 18 6 11.8723 -5.3533 0.0014 19 1 11.5682 -4.3450 -0.2798 20 6 13.4077 -5.4970 -0.0897 21 6 13.8967 -5.2208 1.3496 22 6 12.5990 -4.9422 2.1400 23 8 11.5574 -5.6050 1.3883 24 6 9.1230 -6.5987 0.3532 25 6 7.6070 -6.4030 0.2760 26 1 -0.4850 0.8400 -0.0004 27 1 3.6401 -3.4290 0.9036 28 1 3.6475 -3.4340 -0.8764 29 1 6.0421 -2.7916 -0.8691 30 1 6.0355 -2.7864 0.9108 31 1 5.4154 -5.1869 0.9164 32 1 5.4219 -5.1928 -0.8636 33 1 7.5255 -5.1092 -2.0548 34 1 7.7020 -3.4733 -1.3750 35 1 9.8444 -4.1237 -0.3309 36 1 9.8965 -4.4149 -2.0863 37 1 11.3863 -7.3870 -0.5164 38 1 11.5733 -6.2977 -1.9115 39 1 13.6791 -6.5065 -0.3982 40 1 13.8197 -4.7617 -0.7808 41 1 14.4099 -6.0938 1.7528 42 1 14.5506 -4.3489 1.3701 43 1 12.6684 -5.3620 3.1436 44 1 12.4080 -3.8702 2.1903 45 1 9.5226 -6.0188 1.1851 46 1 9.3460 -7.6546 0.5057 47 1 7.1520 -6.7129 1.2167 48 1 7.2034 -7.0043 -0.5387 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074980647.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:20 Heat of formation + Delta-G solvation = -67.000092 kcal Electronic energy + Delta-G solvation = -24249.159352 eV Core-core repulsion = 20849.808382 eV Total energy + Delta-G solvation = -3399.350970 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.177 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.03178 -39.70899 -37.11559 -34.68985 -34.22304 -33.04768 -31.87364 -31.11406 -28.53849 -27.92129 -26.04240 -24.80820 -24.45497 -22.63820 -22.17186 -21.98272 -20.39822 -19.61332 -17.76070 -17.24169 -17.09777 -16.70268 -16.66285 -16.31772 -16.06642 -15.86268 -15.66396 -15.42920 -15.09092 -14.92561 -14.54508 -14.46681 -13.80137 -13.57329 -13.44880 -13.23854 -13.22299 -12.99838 -12.82703 -12.65731 -12.58226 -12.31733 -12.22037 -12.16271 -11.98952 -11.92045 -11.75788 -11.53624 -11.46927 -11.33612 -11.16292 -10.68931 -10.56416 -9.37439 -9.15192 -8.99280 -8.52087 -6.23401 1.12317 1.31804 1.48024 1.73798 2.24875 2.68076 2.79935 2.85673 2.91803 3.15062 3.66087 3.78756 3.89259 3.95149 4.00600 4.07252 4.09629 4.19289 4.24986 4.27742 4.36917 4.39962 4.49761 4.52539 4.56895 4.62106 4.64817 4.69370 4.76297 4.79345 4.86301 4.88706 4.93173 4.95701 5.00035 5.05364 5.13373 5.15747 5.18806 5.22743 5.30684 5.69544 5.89141 5.97939 6.02982 6.09784 6.18243 6.20034 6.91802 8.61004 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.023880 B = 0.002270 C = 0.002166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.249136 B =12329.885431 C =12923.637820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.036 3.964 3 Si 0.927 3.073 4 H -0.261 1.261 5 H -0.263 1.263 6 H -0.229 1.229 7 C -0.522 4.522 8 H 0.050 0.950 9 S -0.219 6.219 10 C -0.069 4.069 11 C -0.082 4.082 12 C 0.070 3.930 13 N -0.546 5.546 14 C 0.053 3.947 15 C 0.059 3.941 16 N -0.542 5.542 17 C 0.063 3.937 18 C 0.033 3.967 19 H 0.066 0.934 20 C -0.144 4.144 21 C -0.151 4.151 22 C 0.034 3.966 23 O -0.388 6.388 24 C 0.062 3.938 25 C 0.058 3.942 26 H 0.277 0.723 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.035 0.965 33 H 0.036 0.964 34 H 0.080 0.920 35 H 0.039 0.961 36 H 0.092 0.908 37 H 0.083 0.917 38 H 0.105 0.895 39 H 0.084 0.916 40 H 0.087 0.913 41 H 0.080 0.920 42 H 0.086 0.914 43 H 0.094 0.906 44 H 0.054 0.946 45 H 0.052 0.948 46 H 0.081 0.919 47 H 0.082 0.918 48 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.462 -13.885 -0.470 34.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.169 4.169 3 Si 0.748 3.252 4 H -0.185 1.185 5 H -0.187 1.187 6 H -0.152 1.152 7 C -0.670 4.670 8 H 0.068 0.932 9 S 0.009 5.991 10 C -0.218 4.218 11 C -0.121 4.121 12 C -0.060 4.060 13 N -0.271 5.271 14 C -0.075 4.075 15 C -0.069 4.069 16 N -0.265 5.265 17 C -0.065 4.065 18 C -0.026 4.026 19 H 0.084 0.916 20 C -0.183 4.183 21 C -0.188 4.188 22 C -0.042 4.042 23 O -0.307 6.307 24 C -0.066 4.066 25 C -0.070 4.070 26 H 0.086 0.914 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.097 0.903 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.098 0.902 35 H 0.057 0.943 36 H 0.110 0.890 37 H 0.101 0.899 38 H 0.123 0.877 39 H 0.102 0.898 40 H 0.105 0.895 41 H 0.098 0.902 42 H 0.104 0.896 43 H 0.112 0.888 44 H 0.072 0.928 45 H 0.070 0.930 46 H 0.099 0.901 47 H 0.100 0.900 48 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 31.806 -13.052 -0.389 34.382 hybrid contribution -1.408 -0.196 0.034 1.422 sum 30.398 -13.248 -0.356 33.162 Atomic orbital electron populations 1.70043 1.07642 1.29111 1.49254 1.25810 0.95463 1.02839 0.92763 0.85691 0.80743 0.78522 0.80243 1.18533 1.18719 1.15242 1.22343 0.90106 0.96236 1.58287 0.93208 1.83832 1.07488 1.10242 1.97561 1.23068 1.00208 0.95069 1.03431 1.21189 0.91523 0.96257 1.03090 1.21970 0.87637 0.95169 1.01176 1.62110 1.10905 1.19065 1.34985 1.22231 0.94511 1.00715 0.90027 1.22172 0.94855 0.88602 1.01233 1.62400 1.11234 1.18368 1.34499 1.22424 0.85914 0.98574 0.99543 1.23918 0.95701 0.99813 0.83165 0.91635 1.22934 0.93907 1.03757 0.97653 1.22913 0.97681 1.03226 0.95004 1.23557 0.86716 0.97200 0.96752 1.89205 1.48926 1.75133 1.17478 1.22186 0.92806 1.00582 0.91054 1.22192 0.96385 0.87481 1.00961 0.91399 0.91593 0.91777 0.91247 0.91159 0.90315 0.94670 0.94575 0.90151 0.94287 0.89002 0.89903 0.87713 0.89767 0.89470 0.90157 0.89564 0.88764 0.92760 0.93016 0.90095 0.89975 0.94647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.52 13.97 21.65 0.30 -57.22 16 2 C 0.04 2.14 5.50 84.86 0.47 2.61 16 3 Si 0.93 44.74 27.74 68.60 1.90 46.64 16 4 H -0.26 -12.17 7.11 99.48 0.71 -11.46 16 5 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 6 H -0.23 -10.67 6.73 99.48 0.67 -10.00 16 7 C -0.52 -31.38 10.04 67.95 0.68 -30.70 16 8 H 0.05 3.25 8.03 -2.91 -0.02 3.23 16 9 S -0.22 -10.78 19.41 -56.49 -1.10 -11.88 16 10 C -0.07 -2.70 5.67 71.98 0.41 -2.29 16 11 C -0.08 -2.52 5.15 30.59 0.16 -2.37 16 12 C 0.07 1.83 4.96 86.30 0.43 2.26 16 13 N -0.55 -13.28 4.71 -895.76 -4.22 -17.50 16 14 C 0.05 1.19 5.41 86.31 0.47 1.66 16 15 C 0.06 1.13 4.78 86.31 0.41 1.54 16 16 N -0.54 -9.93 4.92 -895.73 -4.40 -14.33 16 17 C 0.06 0.87 5.21 86.30 0.45 1.32 16 18 C 0.03 0.46 2.74 31.10 0.09 0.55 16 19 H 0.07 1.04 5.95 -2.38 -0.01 1.02 16 20 C -0.14 -1.35 6.63 31.61 0.21 -1.14 16 21 C -0.15 -1.41 7.09 31.61 0.22 -1.18 16 22 C 0.03 0.47 7.63 72.49 0.55 1.02 16 23 O -0.39 -7.18 8.80 -148.98 -1.31 -8.49 16 24 C 0.06 1.23 5.19 86.31 0.45 1.68 16 25 C 0.06 1.24 5.61 86.31 0.48 1.73 16 26 H 0.28 15.87 8.31 -92.71 -0.77 15.10 16 27 H 0.07 2.61 8.14 -2.40 -0.02 2.59 16 28 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 29 H 0.07 2.11 6.49 -2.39 -0.02 2.09 16 30 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 31 H 0.08 2.00 8.03 -2.39 -0.02 1.98 16 32 H 0.04 0.92 8.12 -2.39 -0.02 0.90 16 33 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.08 1.85 6.34 -2.39 -0.02 1.83 16 35 H 0.04 0.83 6.24 -2.39 -0.01 0.82 16 36 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.08 1.13 7.93 -2.39 -0.02 1.11 16 38 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.08 0.67 7.87 -2.39 -0.02 0.65 16 40 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 41 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 42 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 43 H 0.09 1.13 8.14 -2.38 -0.02 1.12 16 44 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 45 H 0.05 1.22 5.85 -2.39 -0.01 1.21 16 46 H 0.08 1.45 8.03 -2.39 -0.02 1.43 16 47 H 0.08 1.66 8.07 -2.39 -0.02 1.64 16 48 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 Total: -1.00 -68.24 375.06 -2.48 -70.72 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: 0.87 Total: 15.38 kcal Atomic # 6 Polarization: -28.80 SS G_CDS: 5.48 Total: -23.32 kcal Atomic # 7 Polarization: -80.73 SS G_CDS: -8.32 Total: -89.05 kcal Atomic # 8 Polarization: -7.18 SS G_CDS: -1.31 Total: -8.49 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 1.90 Total: 46.64 kcal Atomic # 16 Polarization: -10.78 SS G_CDS: -1.10 Total: -11.88 kcal Total: -68.24 -2.48 -70.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074980647.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.721 kcal (2) G-P(sol) polarization free energy of solvation -68.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds