Wall clock time and date at job start Tue Mar 31 2020 11:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86804 * 120.00444 * 2 1 4 4 H 1.48496 * 109.46987 * 270.00009 * 3 2 1 5 5 H 1.48493 * 109.46880 * 30.00297 * 3 2 1 6 6 H 1.48502 * 109.46982 * 150.00130 * 3 2 1 7 7 C 1.38807 * 119.99719 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99498 * 359.97438 * 7 2 1 9 9 S 1.76197 * 120.00044 * 179.97438 * 7 2 1 10 10 C 1.81003 * 99.99795 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.46844 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.46909 * 180.02562 * 11 10 9 13 13 N 1.46902 * 109.46914 * 179.97438 * 12 11 10 14 14 C 1.48064 * 111.16437 * 52.60365 * 13 12 11 15 15 C 1.53988 * 107.14543 * 145.63064 * 14 13 12 16 16 C 1.54593 * 105.13853 * 358.91767 * 15 14 13 17 17 H 1.09000 * 110.87780 * 96.47189 * 16 15 14 18 18 C 1.53008 * 110.72605 * 219.68418 * 16 15 14 19 19 N 1.46900 * 109.46826 * 288.50034 * 18 16 15 20 20 C 1.47011 * 111.00268 * 293.63326 * 19 18 16 21 21 C 1.53098 * 109.25911 * 177.61039 * 20 19 18 22 22 O 1.43014 * 109.25958 * 56.84633 * 21 20 19 23 23 C 1.43020 * 113.74208 * 301.33407 * 22 21 20 24 24 C 1.47016 * 110.99438 * 169.99793 * 19 18 16 25 25 C 1.48537 * 110.99943 * 169.99682 * 13 12 11 26 26 H 0.97000 * 119.99586 * 359.97438 * 1 2 3 27 27 H 1.08995 * 109.47221 * 60.00303 * 10 9 7 28 28 H 1.08994 * 109.47000 * 299.99637 * 10 9 7 29 29 H 1.08999 * 109.47844 * 59.99893 * 11 10 9 30 30 H 1.09003 * 109.46995 * 299.99726 * 11 10 9 31 31 H 1.08995 * 109.47330 * 59.99964 * 12 11 10 32 32 H 1.08994 * 109.46826 * 299.99338 * 12 11 10 33 33 H 1.09006 * 109.75798 * 26.31855 * 14 13 12 34 34 H 1.08998 * 110.16226 * 265.17346 * 14 13 12 35 35 H 1.09005 * 110.31083 * 240.00088 * 15 14 13 36 36 H 1.08999 * 110.39531 * 117.87480 * 15 14 13 37 37 H 1.08999 * 109.46706 * 48.49825 * 18 16 15 38 38 H 1.08993 * 109.47151 * 168.50304 * 18 16 15 39 39 H 1.08999 * 109.50272 * 297.54183 * 20 19 18 40 40 H 1.08998 * 109.50531 * 57.67152 * 20 19 18 41 41 H 1.09001 * 109.50466 * 296.91442 * 21 20 19 42 42 H 1.08996 * 109.54225 * 176.80507 * 21 20 19 43 43 H 1.09008 * 109.50291 * 298.73485 * 23 22 21 44 44 H 1.08994 * 109.54441 * 178.62780 * 23 22 21 45 45 H 1.09000 * 109.50868 * 302.32113 * 24 19 18 46 46 H 1.08993 * 109.50835 * 62.42013 * 24 19 18 47 47 H 1.09002 * 110.66696 * 81.84409 * 25 13 12 48 48 H 1.09001 * 110.66368 * 318.88248 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4979 2.0463 -1.4000 5 1 1.4480 2.6526 0.7001 6 1 3.5480 1.4400 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 1.4701 -2.1373 -0.0005 9 16 3.7722 -1.2022 -0.0012 10 6 4.0864 -2.9848 -0.0009 11 6 5.5955 -3.2366 -0.0008 12 6 5.8610 -4.7434 -0.0012 13 7 7.3100 -4.9852 -0.0017 14 6 7.9757 -4.2463 1.0952 15 6 9.1445 -5.1198 1.5870 16 6 9.0813 -6.4016 0.7250 17 1 9.7662 -6.3353 -0.1204 18 6 9.3872 -7.6390 1.5713 19 7 10.8149 -7.6551 1.9169 20 6 11.6450 -7.8452 0.7186 21 6 13.1229 -7.7960 1.1151 22 8 13.3769 -8.7887 2.1128 23 6 12.5859 -8.6334 3.2941 24 6 11.1024 -8.6911 2.9196 25 6 7.6103 -6.4199 0.2387 26 1 -0.4849 0.8401 0.0004 27 1 3.6431 -3.4320 -0.8906 28 1 3.6438 -3.4315 0.8893 29 1 6.0385 -2.7895 0.8891 30 1 6.0384 -2.7898 -0.8909 31 1 5.4182 -5.1902 -0.8913 32 1 5.4181 -5.1906 0.8886 33 1 7.2694 -4.0789 1.9084 34 1 8.3538 -3.2916 0.7297 35 1 9.0155 -5.3661 2.6410 36 1 10.0936 -4.6065 1.4326 37 1 8.7926 -7.6106 2.4844 38 1 9.1404 -8.5368 1.0047 39 1 11.4205 -8.8130 0.2702 40 1 11.4342 -7.0529 0.0004 41 1 13.3600 -6.8098 1.5142 42 1 13.7419 -7.9929 0.2398 43 1 12.8074 -7.6715 3.7566 44 1 12.8158 -9.4358 3.9950 45 1 10.4958 -8.5160 3.8081 46 1 10.8686 -9.6722 2.5066 47 1 7.5173 -6.9924 -0.6842 48 1 6.9554 -6.8261 1.0095 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080632026.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:04 Heat of formation + Delta-G solvation = -70.475810 kcal Electronic energy + Delta-G solvation = -23689.856176 eV Core-core repulsion = 20290.354488 eV Total energy + Delta-G solvation = -3399.501689 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.177 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.80790 -39.88828 -37.11636 -35.30153 -34.69494 -32.36684 -32.00547 -30.45851 -28.57587 -27.96212 -26.47618 -25.01838 -24.34452 -23.27402 -21.64245 -21.45004 -20.44194 -19.58827 -17.71762 -17.21942 -17.14020 -17.09023 -16.85858 -16.22574 -16.01685 -15.94523 -15.81549 -15.39902 -15.05979 -14.92579 -14.76291 -14.34179 -14.11047 -13.65579 -13.50429 -13.31182 -13.23296 -13.03994 -12.94295 -12.68297 -12.39871 -12.31946 -12.24358 -12.04579 -11.95969 -11.90213 -11.62444 -11.61675 -11.42143 -11.28680 -11.17190 -10.63596 -10.57837 -9.38683 -9.36565 -9.00594 -8.52945 -6.24464 1.11542 1.31668 1.47134 1.72970 2.24115 2.66078 2.69075 2.84984 2.95689 3.04136 3.71859 3.77497 3.80085 3.94992 3.97287 4.02609 4.15304 4.20558 4.23826 4.27217 4.31278 4.37532 4.43622 4.45778 4.55098 4.63636 4.67418 4.68272 4.72464 4.75056 4.77918 4.83024 4.84588 4.92156 4.99725 5.03570 5.11246 5.15499 5.22602 5.27075 5.39412 5.68604 5.93954 5.94170 5.98500 6.07645 6.08795 6.19098 6.91000 8.60091 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.042149 B = 0.001856 C = 0.001832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.151307 B =15086.468647 C =15283.206156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.037 3.963 3 Si 0.927 3.073 4 H -0.261 1.261 5 H -0.262 1.262 6 H -0.229 1.229 7 C -0.523 4.523 8 H 0.050 0.950 9 S -0.220 6.220 10 C -0.069 4.069 11 C -0.087 4.087 12 C 0.061 3.939 13 N -0.526 5.526 14 C 0.029 3.971 15 C -0.104 4.104 16 C -0.077 4.077 17 H 0.084 0.916 18 C 0.070 3.930 19 N -0.540 5.540 20 C 0.017 3.983 21 C 0.062 3.938 22 O -0.408 6.408 23 C 0.062 3.938 24 C 0.018 3.982 25 C 0.039 3.961 26 H 0.277 0.723 27 H 0.066 0.934 28 H 0.064 0.936 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.038 0.962 33 H 0.039 0.961 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.079 0.921 38 H 0.039 0.961 39 H 0.037 0.963 40 H 0.095 0.905 41 H 0.060 0.940 42 H 0.110 0.890 43 H 0.060 0.940 44 H 0.111 0.889 45 H 0.096 0.904 46 H 0.037 0.963 47 H 0.085 0.915 48 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.618 -18.640 4.911 33.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.168 4.168 3 Si 0.748 3.252 4 H -0.186 1.186 5 H -0.187 1.187 6 H -0.153 1.153 7 C -0.671 4.671 8 H 0.068 0.932 9 S 0.008 5.992 10 C -0.218 4.218 11 C -0.126 4.126 12 C -0.069 4.069 13 N -0.250 5.250 14 C -0.099 4.099 15 C -0.142 4.142 16 C -0.096 4.096 17 H 0.102 0.898 18 C -0.058 4.058 19 N -0.265 5.265 20 C -0.111 4.111 21 C -0.015 4.015 22 O -0.327 6.327 23 C -0.015 4.015 24 C -0.110 4.110 25 C -0.089 4.089 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.098 0.902 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.092 0.908 37 H 0.097 0.903 38 H 0.057 0.943 39 H 0.055 0.945 40 H 0.113 0.887 41 H 0.078 0.922 42 H 0.128 0.872 43 H 0.078 0.922 44 H 0.129 0.871 45 H 0.114 0.886 46 H 0.055 0.945 47 H 0.103 0.897 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 28.594 -17.183 4.593 33.674 hybrid contribution -2.377 -1.111 0.335 2.645 sum 26.217 -18.294 4.927 32.346 Atomic orbital electron populations 1.70038 1.07632 1.29118 1.49163 1.25799 0.95451 1.02799 0.92721 0.85698 0.80728 0.78566 0.80252 1.18579 1.18670 1.15274 1.22343 0.90086 0.96255 1.58417 0.93181 1.83848 1.07533 1.10247 1.97567 1.23072 1.00185 0.95098 1.03459 1.21270 0.91769 0.96359 1.03175 1.22170 0.88443 0.95002 1.01281 1.64789 1.09199 1.07096 1.43883 1.22973 0.96133 0.98466 0.92313 1.22255 0.97719 0.94946 0.99311 1.21991 0.95457 0.94276 0.97898 0.89803 1.22076 0.88014 0.96389 0.99305 1.62190 1.05485 1.47381 1.11491 1.22843 0.94208 1.01162 0.92924 1.22772 0.94685 0.92033 0.92023 1.87959 1.63524 1.53158 1.28066 1.22781 0.88689 1.02917 0.87129 1.22808 0.98198 0.93151 0.96826 1.23280 0.95875 0.89115 1.00609 0.91387 0.91548 0.91757 0.91270 0.91020 0.90240 0.94402 0.94209 0.90879 0.91174 0.90816 0.90262 0.94302 0.94519 0.88655 0.92192 0.87212 0.92180 0.87060 0.88571 0.94452 0.89663 0.93413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.10 13.97 21.65 0.30 -56.80 16 2 C 0.04 2.20 5.50 84.86 0.47 2.66 16 3 Si 0.93 44.48 27.74 68.60 1.90 46.39 16 4 H -0.26 -12.17 7.11 99.48 0.71 -11.46 16 5 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 6 H -0.23 -10.61 6.74 99.48 0.67 -9.94 16 7 C -0.52 -31.25 10.04 67.96 0.68 -30.57 16 8 H 0.05 3.25 8.03 -2.91 -0.02 3.22 16 9 S -0.22 -10.73 19.41 -56.49 -1.10 -11.82 16 10 C -0.07 -2.67 5.67 71.98 0.41 -2.26 16 11 C -0.09 -2.61 4.96 30.59 0.15 -2.46 16 12 C 0.06 1.50 5.00 86.30 0.43 1.93 16 13 N -0.53 -11.50 5.40 -882.57 -4.77 -16.27 16 14 C 0.03 0.59 5.35 86.41 0.46 1.06 16 15 C -0.10 -1.67 6.43 31.47 0.20 -1.47 16 16 C -0.08 -1.10 3.02 -9.59 -0.03 -1.13 16 17 H 0.08 1.23 6.28 -2.39 -0.01 1.22 16 18 C 0.07 0.87 4.31 86.31 0.37 1.24 16 19 N -0.54 -6.86 4.64 -895.22 -4.16 -11.02 16 20 C 0.02 0.20 5.45 86.31 0.47 0.67 16 21 C 0.06 0.74 7.01 72.01 0.50 1.24 16 22 O -0.41 -6.40 10.83 -148.98 -1.61 -8.01 16 23 C 0.06 0.70 7.01 72.02 0.50 1.20 16 24 C 0.02 0.20 5.64 86.32 0.49 0.69 16 25 C 0.04 0.67 6.00 86.65 0.52 1.19 16 26 H 0.28 15.78 8.31 -92.71 -0.77 15.01 16 27 H 0.07 2.59 8.14 -2.40 -0.02 2.57 16 28 H 0.06 2.50 8.14 -2.40 -0.02 2.48 16 29 H 0.07 2.07 6.64 -2.39 -0.02 2.05 16 30 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 31 H 0.08 1.92 8.14 -2.39 -0.02 1.91 16 32 H 0.04 0.91 7.89 -2.39 -0.02 0.90 16 33 H 0.04 0.87 7.14 -2.38 -0.02 0.86 16 34 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.07 1.10 7.72 -2.38 -0.02 1.08 16 36 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.08 0.97 7.84 -2.39 -0.02 0.95 16 38 H 0.04 0.48 8.12 -2.39 -0.02 0.46 16 39 H 0.04 0.48 8.14 -2.39 -0.02 0.46 16 40 H 0.10 1.05 6.26 -2.39 -0.01 1.03 16 41 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 44 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 45 H 0.10 0.87 8.09 -2.39 -0.02 0.85 16 46 H 0.04 0.46 8.14 -2.39 -0.02 0.44 16 47 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 48 H 0.05 0.80 7.75 -2.39 -0.02 0.78 16 Total: -1.00 -67.50 380.24 -2.93 -70.43 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: 0.86 Total: 13.10 kcal Atomic # 6 Polarization: -31.63 SS G_CDS: 5.63 Total: -26.00 kcal Atomic # 7 Polarization: -75.46 SS G_CDS: -8.62 Total: -84.08 kcal Atomic # 8 Polarization: -6.40 SS G_CDS: -1.61 Total: -8.01 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 1.90 Total: 46.39 kcal Atomic # 16 Polarization: -10.73 SS G_CDS: -1.10 Total: -11.82 kcal Total: -67.50 -2.93 -70.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080632026.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.049 kcal (2) G-P(sol) polarization free energy of solvation -67.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds