Wall clock time and date at job start Tue Mar 31 2020 11:49:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38345 * 119.93004 * 2 1 4 4 C 1.38353 * 120.28590 * 179.97438 * 3 2 1 5 5 C 1.50691 * 119.92603 * 180.02562 * 4 3 2 6 6 C 1.37968 * 120.14032 * 0.02562 * 4 3 2 7 7 C 1.39538 * 119.85909 * 359.97438 * 6 4 3 8 8 C 1.47815 * 120.14302 * 180.02562 * 7 6 4 9 9 C 1.31475 * 118.66150 * 64.97563 * 8 7 6 10 10 C 1.50176 * 123.05918 * 180.32098 * 9 8 7 11 11 N 1.46837 * 110.25189 * 342.95875 * 10 9 8 12 12 C 1.46899 * 110.99971 * 287.73239 * 11 10 9 13 13 C 1.50698 * 109.46987 * 293.00535 * 12 11 10 14 14 O 1.21293 * 120.00006 * 0.02562 * 13 12 11 15 15 N 1.34777 * 119.99538 * 179.97438 * 13 12 11 16 16 C 1.37104 * 119.99773 * 179.72591 * 15 13 12 17 17 H 1.08002 * 119.99671 * 0.27660 * 16 15 13 18 18 C 1.38950 * 120.00030 * 180.27703 * 16 15 13 19 19 N 1.31414 * 119.99926 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 119.99969 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.47234 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.47403 * 120.00325 * 20 18 16 23 23 H 1.48503 * 109.47163 * 240.00122 * 20 18 16 24 24 C 1.47217 * 110.26089 * 51.16581 * 11 10 9 25 25 C 1.50329 * 118.65934 * 244.99796 * 8 7 6 26 26 C 1.37980 * 119.92911 * 180.29365 * 2 1 3 27 27 H 1.09003 * 109.46537 * 90.00052 * 1 2 3 28 28 H 1.08997 * 109.47093 * 209.99946 * 1 2 3 29 29 H 1.09000 * 109.46653 * 330.00442 * 1 2 3 30 30 H 1.07998 * 119.85770 * 359.97438 * 3 2 1 31 31 H 1.09001 * 109.47056 * 270.02018 * 5 4 3 32 32 H 1.08996 * 109.47804 * 30.02130 * 5 4 3 33 33 H 1.09004 * 109.46960 * 150.02335 * 5 4 3 34 34 H 1.08002 * 120.07043 * 180.02562 * 6 4 3 35 35 H 1.07998 * 118.47015 * 0.33807 * 9 8 7 36 36 H 1.08999 * 109.34601 * 222.71331 * 10 9 8 37 37 H 1.09001 * 109.32389 * 103.19323 * 10 9 8 38 38 H 1.09003 * 109.46477 * 173.01025 * 12 11 10 39 39 H 1.08993 * 109.47002 * 53.01351 * 12 11 10 40 40 H 0.97001 * 120.00485 * 0.02562 * 15 13 12 41 41 H 0.96999 * 119.99863 * 180.02562 * 19 18 16 42 42 H 1.08999 * 109.63208 * 50.41715 * 24 11 10 43 43 H 1.09003 * 109.62498 * 170.99461 * 24 11 10 44 44 H 1.09002 * 109.43085 * 43.39920 * 25 8 7 45 45 H 1.09003 * 109.39196 * 283.51792 * 25 8 7 46 46 H 1.08000 * 120.07206 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1989 0.0000 4 6 3.5808 1.2075 0.0005 5 6 4.3244 2.5182 0.0011 6 6 4.2809 0.0187 0.0005 7 6 3.5908 -1.1940 0.0005 8 6 4.3346 -2.4714 0.0011 9 6 5.0732 -2.7705 1.0468 10 6 5.8742 -4.0367 1.1488 11 7 5.4041 -5.0165 0.1613 12 6 4.0962 -5.5644 0.5447 13 6 4.2450 -6.3903 1.7964 14 8 5.3335 -6.5102 2.3181 15 7 3.1684 -6.9947 2.3368 16 6 3.3047 -7.7507 3.4724 17 1 4.2740 -7.8582 3.9364 18 6 2.1958 -8.3786 4.0263 19 7 1.0165 -8.2483 3.4614 20 14 2.3814 -9.4080 5.5739 21 1 3.8010 -9.3952 6.0097 22 1 1.5287 -8.8423 6.6500 23 1 1.9620 -10.8046 5.2928 24 6 5.3484 -4.4051 -1.1768 25 6 4.2160 -3.3753 -1.1942 26 6 2.1954 -1.1958 -0.0061 27 1 -0.3632 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3632 0.8900 0.5138 30 1 1.6538 2.1322 -0.0004 31 1 4.5038 2.8346 -1.0264 32 1 3.7297 3.2732 0.5152 33 1 5.2778 2.3947 0.5149 34 1 5.3609 0.0267 0.0014 35 1 5.1051 -2.0733 1.8710 36 1 5.7657 -4.4530 2.1503 37 1 6.9253 -3.8144 0.9647 38 1 3.7147 -6.1915 -0.2611 39 1 3.3998 -4.7466 0.7295 40 1 2.2979 -6.8985 1.9199 41 1 0.2423 -8.6863 3.8482 42 1 6.2957 -3.9114 -1.3936 43 1 5.1544 -5.1753 -1.9234 44 1 4.2802 -2.7811 -2.1059 45 1 3.2562 -3.8910 -1.1643 46 1 1.6555 -2.1311 -0.0113 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092428308.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:08 Heat of formation + Delta-G solvation = -21.012084 kcal Electronic energy + Delta-G solvation = -25702.014924 eV Core-core repulsion = 22169.214192 eV Total energy + Delta-G solvation = -3532.800732 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.28959 -40.31028 -39.16501 -35.99345 -35.02930 -34.43987 -33.27880 -31.84613 -31.56974 -29.27067 -28.10297 -27.56134 -26.62212 -24.89046 -23.92509 -22.24315 -21.53347 -21.03291 -19.93866 -18.45365 -17.88669 -17.47539 -16.84466 -16.62813 -16.48869 -16.29729 -15.83183 -15.40472 -15.11692 -15.07172 -14.75917 -14.64408 -14.08578 -14.02963 -14.02267 -13.88320 -13.51737 -13.43612 -13.35507 -13.21492 -12.99212 -12.81982 -12.72769 -12.42910 -12.40810 -12.27529 -12.11904 -11.98370 -11.90271 -11.64481 -11.46406 -10.31277 -10.05226 -9.96137 -9.50856 -9.34765 -9.18685 -8.46048 -5.94484 0.25677 0.42253 1.13930 1.36222 1.41096 1.55476 2.06202 2.28778 2.74022 2.81606 3.20789 3.38393 3.63999 3.85543 3.90123 3.96150 4.08074 4.19546 4.23911 4.28574 4.34019 4.43580 4.47022 4.49840 4.53563 4.62277 4.66147 4.67884 4.75033 4.78667 4.83125 4.91090 4.94645 4.98826 5.03347 5.05942 5.21577 5.33083 5.39932 5.41630 5.53482 5.67417 5.68037 5.80368 5.93025 6.08542 6.12284 6.18985 6.61264 7.13742 7.57074 8.12936 8.71803 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.014609 B = 0.003160 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1916.168036 B = 8857.255021 C = 9882.176713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.088 4.088 3 C -0.131 4.131 4 C -0.087 4.087 5 C -0.111 4.111 6 C -0.128 4.128 7 C -0.050 4.050 8 C -0.087 4.087 9 C -0.175 4.175 10 C 0.085 3.915 11 N -0.522 5.522 12 C 0.058 3.942 13 C 0.443 3.557 14 O -0.614 6.614 15 N -0.575 5.575 16 C -0.330 4.330 17 H 0.078 0.922 18 C -0.014 4.014 19 N -0.921 5.921 20 Si 0.992 3.008 21 H -0.273 1.273 22 H -0.271 1.271 23 H -0.270 1.270 24 C 0.055 3.945 25 C -0.110 4.110 26 C -0.134 4.134 27 H 0.081 0.919 28 H 0.063 0.937 29 H 0.079 0.921 30 H 0.141 0.859 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.126 0.874 35 H 0.103 0.897 36 H 0.068 0.932 37 H 0.095 0.905 38 H 0.108 0.892 39 H 0.061 0.939 40 H 0.395 0.605 41 H 0.277 0.723 42 H 0.090 0.910 43 H 0.096 0.904 44 H 0.094 0.906 45 H 0.077 0.923 46 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.270 20.390 -11.936 23.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.088 4.088 3 C -0.149 4.149 4 C -0.087 4.087 5 C -0.168 4.168 6 C -0.146 4.146 7 C -0.050 4.050 8 C -0.087 4.087 9 C -0.195 4.195 10 C -0.043 4.043 11 N -0.244 5.244 12 C -0.073 4.073 13 C 0.230 3.770 14 O -0.500 6.500 15 N -0.213 5.213 16 C -0.460 4.460 17 H 0.096 0.904 18 C -0.213 4.213 19 N -0.563 5.563 20 Si 0.816 3.184 21 H -0.198 1.198 22 H -0.197 1.197 23 H -0.195 1.195 24 C -0.072 4.072 25 C -0.148 4.148 26 C -0.152 4.152 27 H 0.100 0.900 28 H 0.082 0.918 29 H 0.098 0.902 30 H 0.159 0.841 31 H 0.099 0.901 32 H 0.096 0.904 33 H 0.088 0.912 34 H 0.144 0.856 35 H 0.121 0.879 36 H 0.086 0.914 37 H 0.113 0.887 38 H 0.126 0.874 39 H 0.079 0.921 40 H 0.228 0.772 41 H 0.086 0.914 42 H 0.108 0.892 43 H 0.115 0.885 44 H 0.112 0.888 45 H 0.095 0.905 46 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 1.160 19.825 -11.553 22.975 hybrid contribution -1.054 -0.084 0.866 1.367 sum 0.106 19.741 -10.686 22.449 Atomic orbital electron populations 1.20838 0.89631 1.03366 1.03181 1.20142 0.97322 0.92778 0.98571 1.21232 0.93685 0.98049 1.01939 1.20171 0.94171 0.95953 0.98443 1.20827 0.99994 0.92739 1.03214 1.21258 0.99918 0.91179 1.02250 1.19066 0.93206 0.92866 0.99873 1.19826 0.97880 0.94570 0.96411 1.23232 0.99140 0.99291 0.97856 1.21049 0.98667 0.87580 0.96997 1.62268 1.25193 1.33800 1.03134 1.21711 0.91978 0.97924 0.95711 1.20770 0.84266 0.84052 0.87897 1.90461 1.27557 1.66382 1.65609 1.41944 1.09560 1.44774 1.25013 1.19686 0.96018 1.26593 1.03658 0.90352 1.26030 0.94142 0.98915 1.02245 1.69683 0.99756 1.44914 1.41914 0.84885 0.78268 0.77915 0.77364 1.19788 1.19656 1.19520 1.22432 0.98849 0.96149 0.89778 1.21040 1.00582 0.96889 0.96338 1.21226 0.93283 0.98216 1.02496 0.90008 0.91842 0.90200 0.84086 0.90064 0.90360 0.91205 0.85650 0.87909 0.91358 0.88735 0.87388 0.92104 0.77177 0.91356 0.89187 0.88545 0.88797 0.90486 0.86597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.83 10.01 71.24 0.71 -1.12 16 2 C -0.09 -1.86 5.87 -19.90 -0.12 -1.98 16 3 C -0.13 -2.48 9.34 22.32 0.21 -2.27 16 4 C -0.09 -1.69 5.87 -19.90 -0.12 -1.80 16 5 C -0.11 -1.44 10.01 71.23 0.71 -0.73 16 6 C -0.13 -2.88 9.33 22.52 0.21 -2.67 16 7 C -0.05 -1.26 5.17 -20.12 -0.10 -1.37 16 8 C -0.09 -2.27 4.64 -17.94 -0.08 -2.35 16 9 C -0.18 -5.19 8.94 25.03 0.22 -4.97 16 10 C 0.08 2.87 5.57 85.40 0.48 3.34 16 11 N -0.52 -17.45 4.75 -905.54 -4.30 -21.75 16 12 C 0.06 2.12 4.50 85.56 0.39 2.51 16 13 C 0.44 21.80 7.39 87.66 0.65 22.44 16 14 O -0.61 -34.64 14.07 -3.07 -0.04 -34.68 16 15 N -0.58 -30.42 5.29 -306.98 -1.62 -32.04 16 16 C -0.33 -19.12 9.68 84.04 0.81 -18.31 16 17 H 0.08 4.85 7.16 -2.91 -0.02 4.82 16 18 C -0.01 -0.76 5.50 84.93 0.47 -0.29 16 19 N -0.92 -50.54 13.05 21.66 0.28 -50.25 16 20 Si 0.99 43.69 29.55 68.60 2.03 45.71 16 21 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 22 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 23 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 24 C 0.06 1.33 6.02 86.27 0.52 1.85 16 25 C -0.11 -2.49 5.21 29.76 0.16 -2.34 16 26 C -0.13 -3.32 9.40 22.52 0.21 -3.11 16 27 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.06 1.09 8.08 -2.39 -0.02 1.07 16 29 H 0.08 1.04 8.08 -2.39 -0.02 1.02 16 30 H 0.14 1.95 8.06 -2.91 -0.02 1.92 16 31 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.08 0.82 8.08 -2.39 -0.02 0.80 16 33 H 0.07 0.86 8.08 -2.38 -0.02 0.84 16 34 H 0.13 2.58 8.06 -2.91 -0.02 2.56 16 35 H 0.10 3.06 7.98 -2.91 -0.02 3.03 16 36 H 0.07 2.89 5.86 -2.39 -0.01 2.88 16 37 H 0.09 2.88 8.14 -2.39 -0.02 2.86 16 38 H 0.11 3.48 8.08 -2.39 -0.02 3.46 16 39 H 0.06 2.14 6.02 -2.39 -0.01 2.12 16 40 H 0.39 19.91 7.90 -92.71 -0.73 19.18 16 41 H 0.28 14.16 8.31 -92.71 -0.77 13.39 16 42 H 0.09 1.95 8.08 -2.39 -0.02 1.93 16 43 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 44 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 45 H 0.08 1.77 7.14 -2.39 -0.02 1.75 16 46 H 0.12 2.89 8.06 -2.91 -0.02 2.87 16 Total: -1.00 -68.67 374.22 1.91 -66.76 By element: Atomic # 1 Polarization: 39.17 SS G_CDS: 0.25 Total: 39.41 kcal Atomic # 6 Polarization: -18.49 SS G_CDS: 5.32 Total: -13.16 kcal Atomic # 7 Polarization: -98.40 SS G_CDS: -5.64 Total: -104.04 kcal Atomic # 8 Polarization: -34.64 SS G_CDS: -0.04 Total: -34.68 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.71 kcal Total: -68.67 1.91 -66.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092428308.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.744 kcal (2) G-P(sol) polarization free energy of solvation -68.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds