Wall clock time and date at job start Tue Mar 31 2020 11:22:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36929 * 120.00108 * 2 1 4 4 H 1.08001 * 120.00602 * 163.63966 * 3 2 1 5 5 C 1.38817 * 119.99785 * 343.64337 * 3 2 1 6 6 N 1.31616 * 120.00319 * 323.97305 * 5 3 2 7 7 Si 1.86802 * 119.99834 * 143.97427 * 5 3 2 8 8 H 1.48504 * 109.47333 * 180.02562 * 7 5 3 9 9 H 1.48496 * 109.47468 * 59.99616 * 7 5 3 10 10 H 1.48506 * 109.47188 * 299.99894 * 7 5 3 11 11 C 1.46501 * 119.99920 * 180.02562 * 2 1 3 12 12 C 1.50701 * 109.47136 * 269.99533 * 11 2 1 13 13 O 1.21535 * 119.99800 * 0.02562 * 12 11 2 14 14 C 1.40203 * 119.99740 * 180.02562 * 12 11 2 15 15 C 1.35569 * 119.99649 * 185.97004 * 14 12 11 16 16 N 1.36006 * 126.54843 * 175.86429 * 15 14 12 17 17 C 1.46499 * 124.01792 * 359.97438 * 16 15 14 18 18 C 1.39386 * 111.96125 * 179.82045 * 16 15 14 19 19 C 1.39436 * 130.67397 * 180.17816 * 18 16 15 20 20 C 1.37913 * 120.14412 * 180.27177 * 19 18 16 21 21 C 1.38316 * 120.36244 * 0.02758 * 20 19 18 22 22 C 1.38380 * 119.83628 * 359.97438 * 21 20 19 23 23 C 1.37730 * 119.94210 * 359.97438 * 22 21 20 24 24 C 1.51139 * 132.63277 * 180.02562 * 23 22 21 25 25 C 1.52997 * 110.49758 * 61.30343 * 24 23 22 26 26 C 1.53004 * 110.48922 * 298.64307 * 24 23 22 27 27 H 1.08998 * 109.47644 * 94.26731 * 1 2 3 28 28 H 1.09011 * 109.46899 * 214.26535 * 1 2 3 29 29 H 1.09000 * 109.46950 * 334.26101 * 1 2 3 30 30 H 0.97007 * 119.99795 * 353.04800 * 6 5 3 31 31 H 1.08995 * 109.47118 * 30.00028 * 11 2 1 32 32 H 1.09005 * 109.46786 * 149.99795 * 11 2 1 33 33 H 1.07996 * 120.00304 * 5.96389 * 14 12 11 34 34 H 1.09000 * 109.46586 * 90.00555 * 17 16 15 35 35 H 1.09001 * 109.47023 * 210.00160 * 17 16 15 36 36 H 1.08997 * 109.47609 * 330.00248 * 17 16 15 37 37 H 1.08004 * 119.92678 * 0.29905 * 19 18 16 38 38 H 1.08000 * 119.81711 * 180.02562 * 20 19 18 39 39 H 1.07995 * 120.07838 * 179.97438 * 21 20 19 40 40 H 1.07998 * 120.02710 * 180.02562 * 22 21 20 41 41 H 1.08993 * 109.47487 * 165.84055 * 25 24 23 42 42 H 1.09005 * 109.47112 * 285.84249 * 25 24 23 43 43 H 1.09003 * 109.46765 * 45.83371 * 25 24 23 44 44 H 1.08999 * 109.47269 * 334.76031 * 26 24 23 45 45 H 1.09003 * 109.46981 * 94.75705 * 26 24 23 46 46 H 1.08999 * 109.47027 * 214.75401 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1858 0.0000 4 1 3.1969 1.2049 0.2634 5 6 1.4977 2.3637 -0.3386 6 7 0.5699 2.3575 -1.2721 7 14 1.9371 3.9576 0.5309 8 1 1.1037 5.0619 -0.0088 9 1 3.3725 4.2646 0.3061 10 1 1.6840 3.8132 1.9871 11 6 2.1975 -1.2687 -0.0006 12 6 2.4487 -1.7044 1.4201 13 8 2.0535 -1.0210 2.3441 14 6 3.1384 -2.8980 1.6757 15 6 3.2593 -3.3519 2.9473 16 7 3.8273 -4.5242 3.3383 17 6 4.4102 -5.5006 2.4147 18 6 3.7919 -4.6846 4.7224 19 6 4.2587 -5.7214 5.5294 20 6 4.1025 -5.6578 6.8982 21 6 3.4822 -4.5676 7.4812 22 6 3.0161 -3.5347 6.6870 23 6 3.1716 -3.5947 5.3198 24 6 2.7831 -2.6533 4.2031 25 6 3.4885 -1.3058 4.3686 26 6 1.2652 -2.4639 4.1660 27 1 -0.3634 -0.0765 -1.0248 28 1 -0.3633 -0.8494 0.5787 29 1 -0.3633 0.9257 0.4463 30 1 0.4117 1.5548 -1.7933 31 1 1.6084 -2.0281 -0.5147 32 1 3.1499 -1.1381 -0.5144 33 1 3.5733 -3.4558 0.8595 34 1 5.4661 -5.2745 2.2659 35 1 4.3086 -6.5021 2.8329 36 1 3.8899 -5.4518 1.4582 37 1 4.7442 -6.5760 5.0816 38 1 4.4665 -6.4637 7.5183 39 1 3.3619 -4.5228 8.5534 40 1 2.5317 -2.6818 7.1390 41 1 3.4036 -0.7352 3.4438 42 1 3.0233 -0.7497 5.1826 43 1 4.5411 -1.4724 4.5975 44 1 0.7796 -3.3339 4.6078 45 1 0.9965 -1.5716 4.7315 46 1 0.9384 -2.3510 3.1323 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103472816.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:57 Heat of formation + Delta-G solvation = 71.172790 kcal Electronic energy + Delta-G solvation = -26879.018806 eV Core-core repulsion = 23350.215510 eV Total energy + Delta-G solvation = -3528.803296 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.74279 -38.89534 -37.24604 -35.43640 -34.70704 -31.68543 -31.12560 -30.41124 -29.58622 -27.94153 -27.05158 -26.57966 -25.49764 -23.75230 -22.65886 -21.55678 -20.60741 -19.88104 -17.93968 -17.24559 -16.94062 -16.74002 -15.76581 -15.49490 -14.93679 -14.63065 -14.46428 -14.28077 -14.02684 -13.81148 -13.59905 -13.56302 -13.34442 -13.29350 -12.92993 -12.47995 -12.32581 -12.08397 -11.86073 -11.58509 -11.46650 -11.31363 -10.96440 -10.86592 -10.84050 -10.57113 -10.50701 -10.45845 -10.25310 -9.90335 -9.46721 -9.19100 -9.00733 -8.74928 -8.08887 -7.31907 -6.83591 -6.00601 -2.96259 0.93386 1.17726 1.83601 2.64055 3.54686 3.60091 3.67904 3.73162 3.84083 4.11898 4.37672 4.63631 4.72415 4.73457 4.84504 4.96814 5.05219 5.16886 5.22953 5.26616 5.29896 5.37833 5.46721 5.52991 5.62987 5.72101 5.88566 5.94455 5.97623 6.07714 6.10667 6.12919 6.22143 6.26376 6.32635 6.39702 6.44081 6.53697 6.60615 6.64459 6.68719 6.83434 7.02873 7.06241 7.23140 7.26830 8.06371 8.65628 8.71216 9.21168 9.98432 10.35774 11.29053 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.022284 B = 0.003566 C = 0.003295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.189301 B = 7850.556672 C = 8495.468556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.140 3.860 2 N -0.587 5.587 3 C -0.350 4.350 4 H 0.057 0.943 5 C -0.018 4.018 6 N -0.905 5.905 7 Si 1.045 2.955 8 H -0.288 1.288 9 H -0.295 1.295 10 H -0.294 1.294 11 C 0.115 3.885 12 C 0.349 3.651 13 O -0.444 6.444 14 C -0.329 4.329 15 C 0.228 3.772 16 N -0.539 5.539 17 C 0.083 3.917 18 C 0.149 3.851 19 C -0.152 4.152 20 C -0.089 4.089 21 C -0.151 4.151 22 C -0.063 4.063 23 C -0.131 4.131 24 C 0.013 3.987 25 C -0.136 4.136 26 C -0.118 4.118 27 H 0.005 0.995 28 H 0.012 0.988 29 H 0.056 0.944 30 H 0.268 0.732 31 H 0.060 0.940 32 H 0.074 0.926 33 H 0.124 0.876 34 H 0.063 0.937 35 H 0.075 0.925 36 H 0.083 0.917 37 H 0.120 0.880 38 H 0.126 0.874 39 H 0.126 0.874 40 H 0.126 0.874 41 H 0.107 0.893 42 H 0.060 0.940 43 H 0.039 0.961 44 H 0.040 0.960 45 H 0.066 0.934 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.105 -19.505 13.689 24.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.005 4.005 2 N -0.309 5.309 3 C -0.479 4.479 4 H 0.075 0.925 5 C -0.220 4.220 6 N -0.545 5.545 7 Si 0.875 3.125 8 H -0.214 1.214 9 H -0.222 1.222 10 H -0.221 1.221 11 C -0.014 4.014 12 C 0.228 3.772 13 O -0.324 6.324 14 C -0.357 4.357 15 C 0.123 3.877 16 N -0.234 5.234 17 C -0.059 4.059 18 C 0.052 3.948 19 C -0.174 4.174 20 C -0.108 4.108 21 C -0.170 4.170 22 C -0.081 4.081 23 C -0.134 4.134 24 C 0.012 3.988 25 C -0.192 4.192 26 C -0.175 4.175 27 H 0.023 0.977 28 H 0.030 0.970 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.092 0.908 33 H 0.141 0.859 34 H 0.082 0.918 35 H 0.094 0.906 36 H 0.102 0.898 37 H 0.138 0.862 38 H 0.144 0.856 39 H 0.144 0.856 40 H 0.144 0.856 41 H 0.125 0.875 42 H 0.079 0.921 43 H 0.058 0.942 44 H 0.059 0.941 45 H 0.085 0.915 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 6.573 -17.679 14.157 23.583 hybrid contribution 0.815 -2.040 -0.323 2.220 sum 7.388 -19.718 13.835 25.195 Atomic orbital electron populations 1.20906 0.83652 0.99135 0.96834 1.43592 1.00973 1.00774 1.85551 1.19809 0.96463 0.85768 1.45830 0.92513 1.25505 0.98527 1.00413 0.97547 1.70792 1.36794 1.30509 1.16404 0.83839 0.75310 0.76645 0.76708 1.21364 1.22177 1.22137 1.20969 0.97653 0.89524 0.93223 1.21869 0.77403 0.83673 0.94216 1.90449 1.42447 1.53656 1.45833 1.21193 1.16180 1.05101 0.93232 1.20836 0.87812 0.83827 0.95194 1.43891 1.56882 1.18627 1.04038 1.21837 0.98829 0.91530 0.93682 1.18389 0.97656 0.95961 0.82811 1.20267 1.05642 0.98207 0.93273 1.20791 0.98285 0.98172 0.93516 1.21008 1.01669 0.94604 0.99736 1.20291 0.98107 0.98612 0.91094 1.20198 1.02473 0.96225 0.94527 1.19063 0.98204 0.94661 0.86878 1.22028 0.97577 0.94306 1.05313 1.21771 0.90722 1.00677 1.04288 0.97699 0.96980 0.92483 0.92159 0.92210 0.90788 0.85857 0.91797 0.90591 0.89788 0.86241 0.85625 0.85642 0.85608 0.87536 0.92105 0.94216 0.94102 0.91459 0.90039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.14 3.52 9.00 59.85 0.54 4.06 16 2 N -0.59 -15.22 2.36 -182.50 -0.43 -15.65 16 3 C -0.35 -10.13 9.45 -15.06 -0.14 -10.28 16 4 H 0.06 1.67 8.03 -52.49 -0.42 1.25 16 5 C -0.02 -0.52 4.44 -17.43 -0.08 -0.59 16 6 N -0.91 -27.76 12.52 55.49 0.69 -27.07 16 7 Si 1.04 26.38 30.04 -169.99 -5.11 21.27 16 8 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 9 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 10 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 11 C 0.12 2.40 6.03 -5.19 -0.03 2.37 16 12 C 0.35 6.72 6.03 -33.57 -0.20 6.52 16 13 O -0.44 -9.56 9.11 5.33 0.05 -9.52 16 14 C -0.33 -5.16 9.06 -39.80 -0.36 -5.52 16 15 C 0.23 3.41 5.61 -81.36 -0.46 2.96 16 16 N -0.54 -6.77 3.18 -116.74 -0.37 -7.14 16 17 C 0.08 0.72 10.57 59.85 0.63 1.35 16 18 C 0.15 1.86 6.69 -83.73 -0.56 1.30 16 19 C -0.15 -1.53 9.74 -39.25 -0.38 -1.91 16 20 C -0.09 -0.79 10.02 -39.67 -0.40 -1.19 16 21 C -0.15 -1.41 10.07 -39.50 -0.40 -1.81 16 22 C -0.06 -0.70 10.04 -39.71 -0.40 -1.10 16 23 C -0.13 -1.75 4.75 -104.34 -0.50 -2.24 16 24 C 0.01 0.19 0.68 -156.26 -0.11 0.09 16 25 C -0.14 -2.19 8.14 37.16 0.30 -1.89 16 26 C -0.12 -1.85 8.02 37.16 0.30 -1.55 16 27 H 0.00 0.13 7.20 -51.93 -0.37 -0.25 16 28 H 0.01 0.26 8.10 -51.92 -0.42 -0.16 16 29 H 0.06 1.57 6.88 -51.93 -0.36 1.21 16 30 H 0.27 8.24 6.82 -40.82 -0.28 7.96 16 31 H 0.06 1.12 8.07 -51.93 -0.42 0.70 16 32 H 0.07 1.52 8.04 -51.93 -0.42 1.10 16 33 H 0.12 1.63 7.12 -52.49 -0.37 1.25 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.08 0.51 7.62 -51.93 -0.40 0.11 16 36 H 0.08 0.67 7.12 -51.93 -0.37 0.30 16 37 H 0.12 0.93 7.70 -52.48 -0.40 0.53 16 38 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 39 H 0.13 0.87 8.06 -52.49 -0.42 0.44 16 40 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 41 H 0.11 2.07 4.83 -52.39 -0.25 1.81 16 42 H 0.06 0.92 7.88 -51.93 -0.41 0.51 16 43 H 0.04 0.61 8.08 -51.93 -0.42 0.19 16 44 H 0.04 0.58 7.81 -51.93 -0.41 0.18 16 45 H 0.07 1.05 7.68 -51.93 -0.40 0.66 16 46 H 0.08 1.46 5.26 -51.93 -0.27 1.19 16 LS Contribution 363.43 15.07 5.48 5.48 Total: -1.00 -33.57 363.43 -8.80 -42.38 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -6.88 Total: -0.32 kcal Atomic # 6 Polarization: -7.20 SS G_CDS: -2.24 Total: -9.44 kcal Atomic # 7 Polarization: -49.75 SS G_CDS: -0.11 Total: -49.86 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: 0.05 Total: -9.52 kcal Atomic # 14 Polarization: 26.38 SS G_CDS: -5.11 Total: 21.27 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.57 -8.80 -42.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103472816.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.548 kcal (2) G-P(sol) polarization free energy of solvation -33.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds