Wall clock time and date at job start Tue Mar 31 2020 11:22:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36929 * 120.00108 * 2 1 4 4 H 1.08001 * 120.00602 * 163.63966 * 3 2 1 5 5 C 1.38817 * 119.99785 * 343.64337 * 3 2 1 6 6 N 1.31616 * 120.00319 * 323.97305 * 5 3 2 7 7 Si 1.86802 * 119.99834 * 143.97427 * 5 3 2 8 8 H 1.48504 * 109.47333 * 180.02562 * 7 5 3 9 9 H 1.48496 * 109.47468 * 59.99616 * 7 5 3 10 10 H 1.48506 * 109.47188 * 299.99894 * 7 5 3 11 11 C 1.46501 * 119.99920 * 180.02562 * 2 1 3 12 12 C 1.50701 * 109.47136 * 269.99533 * 11 2 1 13 13 O 1.21535 * 119.99800 * 0.02562 * 12 11 2 14 14 C 1.40203 * 119.99740 * 180.02562 * 12 11 2 15 15 C 1.35569 * 119.99649 * 185.97004 * 14 12 11 16 16 N 1.36006 * 126.54843 * 175.86429 * 15 14 12 17 17 C 1.46499 * 124.01792 * 359.97438 * 16 15 14 18 18 C 1.39386 * 111.96125 * 179.82045 * 16 15 14 19 19 C 1.39436 * 130.67397 * 180.17816 * 18 16 15 20 20 C 1.37913 * 120.14412 * 180.27177 * 19 18 16 21 21 C 1.38316 * 120.36244 * 0.02758 * 20 19 18 22 22 C 1.38380 * 119.83628 * 359.97438 * 21 20 19 23 23 C 1.37730 * 119.94210 * 359.97438 * 22 21 20 24 24 C 1.51139 * 132.63277 * 180.02562 * 23 22 21 25 25 C 1.52997 * 110.49758 * 61.30343 * 24 23 22 26 26 C 1.53004 * 110.48922 * 298.64307 * 24 23 22 27 27 H 1.08998 * 109.47644 * 94.26731 * 1 2 3 28 28 H 1.09011 * 109.46899 * 214.26535 * 1 2 3 29 29 H 1.09000 * 109.46950 * 334.26101 * 1 2 3 30 30 H 0.97007 * 119.99795 * 353.04800 * 6 5 3 31 31 H 1.08995 * 109.47118 * 30.00028 * 11 2 1 32 32 H 1.09005 * 109.46786 * 149.99795 * 11 2 1 33 33 H 1.07996 * 120.00304 * 5.96389 * 14 12 11 34 34 H 1.09000 * 109.46586 * 90.00555 * 17 16 15 35 35 H 1.09001 * 109.47023 * 210.00160 * 17 16 15 36 36 H 1.08997 * 109.47609 * 330.00248 * 17 16 15 37 37 H 1.08004 * 119.92678 * 0.29905 * 19 18 16 38 38 H 1.08000 * 119.81711 * 180.02562 * 20 19 18 39 39 H 1.07995 * 120.07838 * 179.97438 * 21 20 19 40 40 H 1.07998 * 120.02710 * 180.02562 * 22 21 20 41 41 H 1.08993 * 109.47487 * 165.84055 * 25 24 23 42 42 H 1.09005 * 109.47112 * 285.84249 * 25 24 23 43 43 H 1.09003 * 109.46765 * 45.83371 * 25 24 23 44 44 H 1.08999 * 109.47269 * 334.76031 * 26 24 23 45 45 H 1.09003 * 109.46981 * 94.75705 * 26 24 23 46 46 H 1.08999 * 109.47027 * 214.75401 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1858 0.0000 4 1 3.1969 1.2049 0.2634 5 6 1.4977 2.3637 -0.3386 6 7 0.5699 2.3575 -1.2721 7 14 1.9371 3.9576 0.5309 8 1 1.1037 5.0619 -0.0088 9 1 3.3725 4.2646 0.3061 10 1 1.6840 3.8132 1.9871 11 6 2.1975 -1.2687 -0.0006 12 6 2.4487 -1.7044 1.4201 13 8 2.0535 -1.0210 2.3441 14 6 3.1384 -2.8980 1.6757 15 6 3.2593 -3.3519 2.9473 16 7 3.8273 -4.5242 3.3383 17 6 4.4102 -5.5006 2.4147 18 6 3.7919 -4.6846 4.7224 19 6 4.2587 -5.7214 5.5294 20 6 4.1025 -5.6578 6.8982 21 6 3.4822 -4.5676 7.4812 22 6 3.0161 -3.5347 6.6870 23 6 3.1716 -3.5947 5.3198 24 6 2.7831 -2.6533 4.2031 25 6 3.4885 -1.3058 4.3686 26 6 1.2652 -2.4639 4.1660 27 1 -0.3634 -0.0765 -1.0248 28 1 -0.3633 -0.8494 0.5787 29 1 -0.3633 0.9257 0.4463 30 1 0.4117 1.5548 -1.7933 31 1 1.6084 -2.0281 -0.5147 32 1 3.1499 -1.1381 -0.5144 33 1 3.5733 -3.4558 0.8595 34 1 5.4661 -5.2745 2.2659 35 1 4.3086 -6.5021 2.8329 36 1 3.8899 -5.4518 1.4582 37 1 4.7442 -6.5760 5.0816 38 1 4.4665 -6.4637 7.5183 39 1 3.3619 -4.5228 8.5534 40 1 2.5317 -2.6818 7.1390 41 1 3.4036 -0.7352 3.4438 42 1 3.0233 -0.7497 5.1826 43 1 4.5411 -1.4724 4.5975 44 1 0.7796 -3.3339 4.6078 45 1 0.9965 -1.5716 4.7315 46 1 0.9384 -2.3510 3.1323 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103472816.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:56 Heat of formation + Delta-G solvation = 53.722797 kcal Electronic energy + Delta-G solvation = -26879.775495 eV Core-core repulsion = 23350.215510 eV Total energy + Delta-G solvation = -3529.559984 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.75395 -40.25523 -38.21461 -37.27147 -35.90801 -33.30895 -32.68223 -31.22573 -30.64474 -29.28363 -28.34473 -28.06401 -27.38061 -24.79830 -23.96670 -22.90983 -21.77052 -21.15266 -19.38436 -19.14175 -17.94566 -17.68335 -17.01198 -16.46500 -16.30509 -16.08438 -15.93895 -15.45987 -15.41876 -15.21835 -15.12569 -14.97856 -14.68379 -14.37780 -14.03302 -13.75225 -13.42257 -13.24721 -13.07605 -12.99386 -12.84492 -12.70313 -12.44347 -12.42328 -12.36013 -12.08314 -11.93007 -11.91294 -11.84686 -11.60076 -11.50389 -10.53123 -10.16723 -10.07985 -9.82500 -8.91617 -8.32573 -8.28377 -5.20988 -0.09026 0.38076 0.79562 1.55526 1.64159 1.73662 1.83725 2.27215 2.66568 2.82828 3.07298 3.13904 3.36821 3.60417 3.79496 3.95284 3.99727 4.14803 4.16949 4.18896 4.33582 4.43857 4.50160 4.58975 4.59850 4.61017 4.66661 4.71374 4.72473 4.80578 4.83931 4.86308 4.89596 4.90816 5.01200 5.05427 5.12242 5.16511 5.31034 5.41475 5.46445 5.55047 5.58075 5.78836 5.82552 6.12774 6.26263 6.39653 7.00654 7.28487 7.82972 8.20337 8.99249 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.022284 B = 0.003566 C = 0.003295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.189301 B = 7850.556672 C = 8495.468556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.154 3.846 2 N -0.605 5.605 3 C -0.352 4.352 4 H 0.045 0.955 5 C -0.068 4.068 6 N -0.930 5.930 7 Si 1.094 2.906 8 H -0.288 1.288 9 H -0.275 1.275 10 H -0.292 1.292 11 C 0.108 3.892 12 C 0.351 3.649 13 O -0.478 6.478 14 C -0.351 4.351 15 C 0.243 3.757 16 N -0.535 5.535 17 C 0.073 3.927 18 C 0.122 3.878 19 C -0.146 4.146 20 C -0.085 4.085 21 C -0.144 4.144 22 C -0.077 4.077 23 C -0.154 4.154 24 C 0.006 3.994 25 C -0.127 4.127 26 C -0.108 4.108 27 H 0.000 1.000 28 H 0.034 0.966 29 H 0.024 0.976 30 H 0.256 0.744 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.147 0.853 34 H 0.075 0.925 35 H 0.101 0.899 36 H 0.090 0.910 37 H 0.146 0.854 38 H 0.161 0.839 39 H 0.153 0.847 40 H 0.129 0.871 41 H 0.074 0.926 42 H 0.062 0.938 43 H 0.043 0.957 44 H 0.051 0.949 45 H 0.057 0.943 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.802 -22.515 16.008 28.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 N -0.328 5.328 3 C -0.481 4.481 4 H 0.063 0.937 5 C -0.266 4.266 6 N -0.572 5.572 7 Si 0.920 3.080 8 H -0.214 1.214 9 H -0.201 1.201 10 H -0.220 1.220 11 C -0.019 4.019 12 C 0.234 3.766 13 O -0.360 6.360 14 C -0.379 4.379 15 C 0.134 3.866 16 N -0.228 5.228 17 C -0.067 4.067 18 C 0.026 3.974 19 C -0.167 4.167 20 C -0.103 4.103 21 C -0.163 4.163 22 C -0.095 4.095 23 C -0.157 4.157 24 C 0.005 3.995 25 C -0.184 4.184 26 C -0.165 4.165 27 H 0.018 0.982 28 H 0.053 0.947 29 H 0.043 0.957 30 H 0.065 0.935 31 H 0.101 0.899 32 H 0.093 0.907 33 H 0.165 0.835 34 H 0.093 0.907 35 H 0.119 0.881 36 H 0.108 0.892 37 H 0.164 0.836 38 H 0.179 0.821 39 H 0.171 0.829 40 H 0.147 0.853 41 H 0.092 0.908 42 H 0.081 0.919 43 H 0.062 0.938 44 H 0.070 0.930 45 H 0.076 0.924 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 8.314 -20.768 16.491 27.791 hybrid contribution 0.354 -1.308 -0.849 1.599 sum 8.668 -22.076 15.642 28.411 Atomic orbital electron populations 1.20697 0.83614 0.98324 0.96502 1.43752 1.01331 1.01741 1.85949 1.19952 0.96279 0.87333 1.44577 0.93689 1.26691 0.98684 1.03410 0.97765 1.70900 1.38471 1.29981 1.17801 0.83150 0.76079 0.73347 0.75440 1.21422 1.20113 1.21957 1.21239 0.97525 0.88057 0.95064 1.21594 0.77613 0.84725 0.92638 1.90463 1.44403 1.55028 1.46135 1.20847 1.18040 1.04480 0.94526 1.20804 0.86523 0.84523 0.94730 1.44105 1.55764 1.18061 1.04908 1.22162 0.99288 0.91780 0.93473 1.18685 0.99067 0.96870 0.82740 1.20658 1.04421 0.97952 0.93625 1.21272 0.96904 0.98667 0.93439 1.21399 1.00101 0.93756 1.01014 1.20523 0.98640 0.99717 0.90627 1.20172 1.04212 0.96338 0.94930 1.19028 0.97359 0.94625 0.88474 1.21859 0.98022 0.94933 1.03557 1.21621 0.91708 1.00663 1.02492 0.98186 0.94718 0.95691 0.93481 0.89882 0.90731 0.83531 0.90660 0.88077 0.89183 0.83635 0.82112 0.82909 0.85262 0.90793 0.91907 0.93841 0.93000 0.92378 0.92503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.15 8.00 9.00 127.77 1.15 9.15 16 2 N -0.60 -32.30 2.36 -731.30 -1.72 -34.03 16 3 C -0.35 -20.98 9.45 84.04 0.79 -20.18 16 4 H 0.05 2.73 8.03 -2.91 -0.02 2.71 16 5 C -0.07 -4.10 4.44 84.86 0.38 -3.72 16 6 N -0.93 -58.70 12.52 21.65 0.27 -58.43 16 7 Si 1.09 54.59 30.04 68.60 2.06 56.65 16 8 H -0.29 -14.32 7.11 99.48 0.71 -13.61 16 9 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 10 H -0.29 -14.38 7.11 99.48 0.71 -13.67 16 11 C 0.11 4.60 6.03 85.63 0.52 5.12 16 12 C 0.35 13.89 6.03 26.16 0.16 14.05 16 13 O -0.48 -21.49 9.11 -3.83 -0.03 -21.52 16 14 C -0.35 -10.93 9.06 22.13 0.20 -10.73 16 15 C 0.24 7.10 5.61 41.51 0.23 7.33 16 16 N -0.53 -12.25 3.18 -523.24 -1.66 -13.91 16 17 C 0.07 1.04 10.57 127.77 1.35 2.39 16 18 C 0.12 2.74 6.69 38.39 0.26 3.00 16 19 C -0.15 -2.30 9.74 22.48 0.22 -2.08 16 20 C -0.08 -1.09 10.02 22.21 0.22 -0.87 16 21 C -0.14 -2.13 10.07 22.32 0.22 -1.90 16 22 C -0.08 -1.57 10.04 22.18 0.22 -1.35 16 23 C -0.15 -3.87 4.75 -19.69 -0.09 -3.96 16 24 C 0.01 0.18 0.68 -53.32 -0.04 0.15 16 25 C -0.13 -4.23 8.14 71.98 0.59 -3.65 16 26 C -0.11 -3.47 8.02 71.98 0.58 -2.89 16 27 H 0.00 0.01 7.20 -2.39 -0.02 -0.01 16 28 H 0.03 1.60 8.10 -2.38 -0.02 1.58 16 29 H 0.02 1.41 6.88 -2.39 -0.02 1.40 16 30 H 0.26 16.30 6.82 -92.70 -0.63 15.67 16 31 H 0.08 3.09 8.07 -2.39 -0.02 3.08 16 32 H 0.07 3.12 8.04 -2.38 -0.02 3.10 16 33 H 0.15 3.70 7.12 -2.91 -0.02 3.68 16 34 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.10 0.93 7.62 -2.39 -0.02 0.91 16 36 H 0.09 1.19 7.12 -2.39 -0.02 1.17 16 37 H 0.15 1.50 7.70 -2.91 -0.02 1.47 16 38 H 0.16 0.97 8.06 -2.91 -0.02 0.95 16 39 H 0.15 1.40 8.06 -2.91 -0.02 1.38 16 40 H 0.13 2.44 8.06 -2.91 -0.02 2.41 16 41 H 0.07 3.02 4.83 -9.66 -0.05 2.97 16 42 H 0.06 1.98 7.88 -2.38 -0.02 1.96 16 43 H 0.04 1.35 8.08 -2.39 -0.02 1.33 16 44 H 0.05 1.49 7.81 -2.39 -0.02 1.47 16 45 H 0.06 1.91 7.68 -2.39 -0.02 1.89 16 46 H 0.06 2.12 5.26 -2.39 -0.01 2.10 16 Total: -1.00 -75.54 363.43 6.94 -68.59 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: 1.07 Total: 12.78 kcal Atomic # 6 Polarization: -17.09 SS G_CDS: 6.96 Total: -10.13 kcal Atomic # 7 Polarization: -103.25 SS G_CDS: -3.11 Total: -106.37 kcal Atomic # 8 Polarization: -21.49 SS G_CDS: -0.03 Total: -21.52 kcal Atomic # 14 Polarization: 54.59 SS G_CDS: 2.06 Total: 56.65 kcal Total: -75.54 6.94 -68.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103472816.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.316 kcal (2) G-P(sol) polarization free energy of solvation -75.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds