Wall clock time and date at job start Tue Mar 31 2020 11:21:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31640 * 1 3 3 Si 1.86796 * 119.99823 * 2 1 4 4 H 1.48505 * 109.47121 * 239.99843 * 3 2 1 5 5 H 1.48498 * 109.47505 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46699 * 120.00375 * 3 2 1 7 7 C 1.38798 * 119.99878 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00079 * 180.02562 * 7 2 1 9 9 S 1.76202 * 120.00043 * 0.02562 * 7 2 1 10 10 C 1.80997 * 100.00230 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47517 * 179.97438 * 10 9 7 12 12 C 1.52996 * 109.47345 * 180.02562 * 11 10 9 13 13 N 1.46907 * 109.47158 * 179.97438 * 12 11 10 14 14 C 1.46957 * 110.99669 * 169.99558 * 13 12 11 15 15 C 1.53056 * 109.36272 * 176.81142 * 14 13 12 16 16 N 1.46963 * 109.36215 * 58.40123 * 15 14 13 17 17 C 1.46897 * 110.99878 * 176.81273 * 16 15 14 18 18 C 1.53185 * 109.54206 * 294.82604 * 17 16 15 19 19 C 1.53109 * 109.15420 * 183.24222 * 18 17 16 20 20 O 1.42897 * 109.48678 * 57.47188 * 19 18 17 21 21 C 1.42899 * 114.10107 * 298.88767 * 20 19 18 22 22 C 1.53095 * 109.41590 * 61.16047 * 21 20 19 23 23 C 1.46953 * 110.88176 * 300.68256 * 16 15 14 24 24 C 1.46954 * 111.00025 * 46.20080 * 13 12 11 25 25 H 0.96995 * 119.99518 * 359.97438 * 1 2 3 26 26 H 1.09007 * 109.47013 * 59.99452 * 10 9 7 27 27 H 1.09000 * 109.47116 * 300.00050 * 10 9 7 28 28 H 1.08998 * 109.47530 * 59.99870 * 11 10 9 29 29 H 1.09000 * 109.47028 * 300.00177 * 11 10 9 30 30 H 1.09004 * 109.47531 * 59.99925 * 12 11 10 31 31 H 1.09000 * 109.47001 * 299.99947 * 12 11 10 32 32 H 1.09000 * 109.48960 * 56.85040 * 14 13 12 33 33 H 1.09002 * 109.49310 * 296.77988 * 14 13 12 34 34 H 1.08994 * 109.49121 * 178.37113 * 15 14 13 35 35 H 1.08998 * 109.48697 * 298.43883 * 15 14 13 36 36 H 1.09001 * 109.54582 * 54.99613 * 17 16 15 37 37 H 1.08995 * 109.51952 * 303.05815 * 18 17 16 38 38 H 1.08994 * 109.52199 * 63.24669 * 18 17 16 39 39 H 1.08991 * 109.40354 * 297.49109 * 19 18 17 40 40 H 1.08995 * 109.48697 * 177.51039 * 19 18 17 41 41 H 1.08996 * 109.48193 * 301.17850 * 21 20 19 42 42 H 1.08997 * 109.49267 * 181.14422 * 21 20 19 43 43 H 1.09003 * 109.52510 * 182.48799 * 22 21 20 44 44 H 1.09001 * 109.57573 * 62.32549 * 22 21 20 45 45 H 1.09002 * 109.48895 * 299.35175 * 23 16 15 46 46 H 1.09000 * 109.48895 * 179.28417 * 23 16 15 47 47 H 1.09010 * 109.48735 * 303.15856 * 24 13 12 48 48 H 1.09006 * 109.49174 * 63.21596 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6964 -1.2125 5 1 1.2854 2.7465 0.0006 6 1 3.1042 1.6963 1.2125 7 6 2.0104 -1.2020 -0.0005 8 1 3.0904 -1.2021 -0.0001 9 16 1.1293 -2.7280 -0.0019 10 6 2.5158 -3.8915 -0.0029 11 6 1.9793 -5.3243 -0.0036 12 6 3.1513 -6.3077 -0.0038 13 7 2.6361 -7.6835 -0.0038 14 6 3.7167 -8.6505 -0.2424 15 6 3.1545 -10.0714 -0.1558 16 7 2.0802 -10.2315 -1.1459 17 6 1.5651 -11.6071 -1.1459 18 6 2.6638 -12.5657 -1.6156 19 6 2.0942 -13.9850 -1.6898 20 8 0.9680 -14.0013 -2.5692 21 6 -0.1094 -13.1598 -2.1533 22 6 0.3708 -11.7071 -2.0999 23 6 0.9997 -9.2644 -0.9074 24 6 1.5620 -7.8436 -0.9939 25 1 -0.4849 0.8400 0.0004 26 1 3.1245 -3.7321 0.8872 27 1 3.1244 -3.7306 -0.8928 28 1 1.3704 -5.4839 -0.8934 29 1 1.3709 -5.4848 0.8865 30 1 3.7599 -6.1481 0.8863 31 1 3.7600 -6.1473 -0.8937 32 1 4.4939 -8.5205 0.5108 33 1 4.1394 -8.4864 -1.2336 34 1 3.9482 -10.7897 -0.3610 35 1 2.7563 -10.2446 0.8439 36 1 1.2506 -11.8788 -0.1382 37 1 3.0138 -12.2630 -2.6024 38 1 3.4943 -12.5415 -0.9101 39 1 1.7830 -14.3027 -0.6948 40 1 2.8590 -14.6645 -2.0657 41 1 -0.4495 -13.4667 -1.1643 42 1 -0.9321 -13.2446 -2.8632 43 1 -0.4368 -11.0694 -1.7405 44 1 0.6729 -11.3854 -3.0966 45 1 0.5771 -9.4285 0.0839 46 1 0.2226 -9.3944 -1.6605 47 1 0.7682 -7.1252 -0.7887 48 1 1.9601 -7.6703 -1.9937 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000175492342.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:43 Heat of formation + Delta-G solvation = -46.740559 kcal Electronic energy + Delta-G solvation = -24070.286919 eV Core-core repulsion = 20671.814468 eV Total energy + Delta-G solvation = -3398.472451 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.177 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.33836 -38.90543 -36.44459 -33.45053 -32.42333 -31.96079 -31.45099 -30.73270 -27.43313 -25.65260 -24.79376 -24.54424 -23.31792 -22.84265 -20.86390 -20.35152 -19.80007 -17.49309 -17.18538 -16.39200 -16.04725 -15.47326 -15.32321 -15.19665 -14.99252 -14.84934 -14.79605 -14.36356 -14.09775 -13.80683 -13.68612 -13.30475 -13.06708 -12.81960 -12.20119 -12.15796 -11.85627 -11.74985 -11.70152 -11.56586 -11.39181 -11.15367 -11.04482 -10.91771 -10.78356 -10.70505 -10.61727 -10.54646 -10.25289 -9.97352 -9.52024 -9.04539 -8.62355 -8.30751 -8.29676 -6.52230 -6.22125 -3.92380 3.21832 3.23569 3.28103 3.41327 3.53739 3.57893 3.91809 4.23244 4.24849 4.45862 4.58824 4.66398 4.78936 4.80190 4.93076 5.04640 5.06249 5.07534 5.13704 5.16440 5.20231 5.26581 5.28787 5.35324 5.36796 5.40255 5.42309 5.57834 5.61963 5.64576 5.69798 5.75059 5.76434 5.81331 5.87097 5.92377 6.01425 6.13468 6.32376 6.58226 6.71525 6.75603 6.77929 6.81254 7.07293 7.09707 7.60864 8.37081 9.24000 10.86011 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.038452 B = 0.001983 C = 0.001912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.003022 B =14113.254638 C =14643.378795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.070 3.930 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.516 4.516 8 H 0.072 0.928 9 S -0.133 6.133 10 C -0.112 4.112 11 C -0.100 4.100 12 C 0.061 3.939 13 N -0.540 5.540 14 C 0.057 3.943 15 C 0.057 3.943 16 N -0.535 5.535 17 C 0.085 3.915 18 C -0.148 4.148 19 C 0.062 3.938 20 O -0.383 6.383 21 C 0.063 3.937 22 C -0.154 4.154 23 C 0.054 3.946 24 C 0.050 3.950 25 H 0.268 0.732 26 H 0.060 0.940 27 H 0.058 0.942 28 H 0.067 0.933 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.033 0.967 32 H 0.077 0.923 33 H 0.041 0.959 34 H 0.078 0.922 35 H 0.041 0.959 36 H 0.041 0.959 37 H 0.081 0.919 38 H 0.073 0.927 39 H 0.048 0.952 40 H 0.095 0.905 41 H 0.049 0.951 42 H 0.096 0.904 43 H 0.077 0.923 44 H 0.082 0.918 45 H 0.042 0.958 46 H 0.083 0.917 47 H 0.092 0.908 48 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.036 -27.587 -2.159 27.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.138 4.138 3 Si 0.745 3.255 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.664 4.664 8 H 0.090 0.910 9 S 0.095 5.905 10 C -0.261 4.261 11 C -0.139 4.139 12 C -0.068 4.068 13 N -0.265 5.265 14 C -0.071 4.071 15 C -0.071 4.071 16 N -0.260 5.260 17 C -0.023 4.023 18 C -0.186 4.186 19 C -0.015 4.015 20 O -0.302 6.302 21 C -0.014 4.014 22 C -0.191 4.191 23 C -0.074 4.074 24 C -0.078 4.078 25 H 0.077 0.923 26 H 0.079 0.921 27 H 0.077 0.923 28 H 0.086 0.914 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.051 0.949 32 H 0.096 0.904 33 H 0.059 0.941 34 H 0.096 0.904 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.100 0.900 38 H 0.091 0.909 39 H 0.066 0.934 40 H 0.113 0.887 41 H 0.067 0.933 42 H 0.114 0.886 43 H 0.095 0.905 44 H 0.101 0.899 45 H 0.060 0.940 46 H 0.101 0.899 47 H 0.110 0.890 48 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 2.741 -27.753 -2.320 27.985 hybrid contribution 1.974 1.593 0.326 2.557 sum 4.714 -26.160 -1.994 26.656 Atomic orbital electron populations 1.70017 1.05902 1.27411 1.47225 1.25020 0.95096 0.99084 0.94635 0.86221 0.79234 0.81221 0.78839 1.19952 1.20815 1.19942 1.22647 0.94475 0.90799 1.58519 0.91031 1.84600 1.09587 0.99423 1.96855 1.23226 1.02851 0.97296 1.02765 1.21421 0.97083 0.92327 1.03024 1.22185 0.97326 0.86573 1.00725 1.62246 1.10616 1.04392 1.49202 1.22129 0.93552 0.91184 1.00261 1.22174 0.94443 0.96794 0.93655 1.62212 1.11044 1.03143 1.49553 1.21610 0.94588 0.88693 0.97443 1.22274 0.98213 0.94785 1.03322 1.22578 0.88642 0.96313 0.93950 1.87938 1.26322 1.65944 1.49961 1.22588 0.89589 0.89021 1.00247 1.22370 0.97838 0.97543 1.01390 1.22263 0.93356 0.91458 1.00281 1.22299 0.95392 0.96097 0.94028 0.92269 0.92102 0.92328 0.91405 0.90807 0.90721 0.94870 0.90417 0.94086 0.90378 0.94075 0.94127 0.90025 0.90866 0.93369 0.88670 0.93292 0.88560 0.90470 0.89915 0.94018 0.89926 0.89017 0.93999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.11 13.22 55.49 0.73 -25.38 16 2 C 0.07 2.02 5.49 -17.43 -0.10 1.92 16 3 Si 0.92 21.64 29.55 -169.99 -5.02 16.62 16 4 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.52 -14.91 9.50 30.94 0.29 -14.61 16 8 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 9 S -0.13 -3.50 21.44 -107.50 -2.30 -5.80 16 10 C -0.11 -2.28 5.67 37.15 0.21 -2.07 16 11 C -0.10 -1.64 4.48 -26.74 -0.12 -1.76 16 12 C 0.06 0.83 5.28 -3.82 -0.02 0.81 16 13 N -0.54 -6.75 4.86 -234.45 -1.14 -7.89 16 14 C 0.06 0.61 5.58 -3.76 -0.02 0.59 16 15 C 0.06 0.54 5.40 -3.76 -0.02 0.52 16 16 N -0.53 -5.16 4.58 -226.26 -1.04 -6.20 16 17 C 0.09 0.69 2.03 -67.53 -0.14 0.56 16 18 C -0.15 -1.07 5.25 -26.58 -0.14 -1.21 16 19 C 0.06 0.42 6.84 37.21 0.25 0.68 16 20 O -0.38 -3.39 10.77 -35.23 -0.38 -3.77 16 21 C 0.06 0.44 6.84 37.21 0.25 0.70 16 22 C -0.15 -1.16 4.77 -26.59 -0.13 -1.29 16 23 C 0.05 0.56 5.10 -3.77 -0.02 0.54 16 24 C 0.05 0.60 4.93 -3.77 -0.02 0.58 16 25 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 26 H 0.06 1.23 8.14 -51.91 -0.42 0.80 16 27 H 0.06 1.18 8.14 -51.92 -0.42 0.76 16 28 H 0.07 1.11 6.26 -51.93 -0.33 0.79 16 29 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 30 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.03 0.46 8.08 -51.93 -0.42 0.04 16 32 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.08 0.62 6.38 -51.93 -0.33 0.29 16 35 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.04 0.34 8.13 -51.93 -0.42 -0.08 16 37 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.46 6.63 -51.93 -0.34 0.12 16 39 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 42 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.08 0.54 6.47 -51.93 -0.34 0.21 16 44 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.08 0.76 6.08 -51.93 -0.32 0.44 16 47 H 0.09 1.16 5.99 -51.92 -0.31 0.85 16 48 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 LS Contribution 375.17 15.07 5.65 5.65 Total: -1.00 -31.45 375.17 -11.89 -43.34 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -8.69 Total: -2.53 kcal Atomic # 6 Polarization: -14.34 SS G_CDS: 0.30 Total: -14.05 kcal Atomic # 7 Polarization: -38.02 SS G_CDS: -1.44 Total: -39.47 kcal Atomic # 8 Polarization: -3.39 SS G_CDS: -0.38 Total: -3.77 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 16 Polarization: -3.50 SS G_CDS: -2.30 Total: -5.80 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.45 -11.89 -43.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175492342.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.404 kcal (2) G-P(sol) polarization free energy of solvation -31.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds