Wall clock time and date at job start Tue Mar 31 2020 11:21:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31640 * 1 3 3 Si 1.86796 * 119.99823 * 2 1 4 4 H 1.48505 * 109.47121 * 239.99843 * 3 2 1 5 5 H 1.48498 * 109.47505 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46699 * 120.00375 * 3 2 1 7 7 C 1.38798 * 119.99878 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00079 * 180.02562 * 7 2 1 9 9 S 1.76202 * 120.00043 * 0.02562 * 7 2 1 10 10 C 1.80997 * 100.00230 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47517 * 179.97438 * 10 9 7 12 12 C 1.52996 * 109.47345 * 180.02562 * 11 10 9 13 13 N 1.46907 * 109.47158 * 179.97438 * 12 11 10 14 14 C 1.46957 * 110.99669 * 169.99558 * 13 12 11 15 15 C 1.53056 * 109.36272 * 176.81142 * 14 13 12 16 16 N 1.46963 * 109.36215 * 58.40123 * 15 14 13 17 17 C 1.46897 * 110.99878 * 176.81273 * 16 15 14 18 18 C 1.53185 * 109.54206 * 294.82604 * 17 16 15 19 19 C 1.53109 * 109.15420 * 183.24222 * 18 17 16 20 20 O 1.42897 * 109.48678 * 57.47188 * 19 18 17 21 21 C 1.42899 * 114.10107 * 298.88767 * 20 19 18 22 22 C 1.53095 * 109.41590 * 61.16047 * 21 20 19 23 23 C 1.46953 * 110.88176 * 300.68256 * 16 15 14 24 24 C 1.46954 * 111.00025 * 46.20080 * 13 12 11 25 25 H 0.96995 * 119.99518 * 359.97438 * 1 2 3 26 26 H 1.09007 * 109.47013 * 59.99452 * 10 9 7 27 27 H 1.09000 * 109.47116 * 300.00050 * 10 9 7 28 28 H 1.08998 * 109.47530 * 59.99870 * 11 10 9 29 29 H 1.09000 * 109.47028 * 300.00177 * 11 10 9 30 30 H 1.09004 * 109.47531 * 59.99925 * 12 11 10 31 31 H 1.09000 * 109.47001 * 299.99947 * 12 11 10 32 32 H 1.09000 * 109.48960 * 56.85040 * 14 13 12 33 33 H 1.09002 * 109.49310 * 296.77988 * 14 13 12 34 34 H 1.08994 * 109.49121 * 178.37113 * 15 14 13 35 35 H 1.08998 * 109.48697 * 298.43883 * 15 14 13 36 36 H 1.09001 * 109.54582 * 54.99613 * 17 16 15 37 37 H 1.08995 * 109.51952 * 303.05815 * 18 17 16 38 38 H 1.08994 * 109.52199 * 63.24669 * 18 17 16 39 39 H 1.08991 * 109.40354 * 297.49109 * 19 18 17 40 40 H 1.08995 * 109.48697 * 177.51039 * 19 18 17 41 41 H 1.08996 * 109.48193 * 301.17850 * 21 20 19 42 42 H 1.08997 * 109.49267 * 181.14422 * 21 20 19 43 43 H 1.09003 * 109.52510 * 182.48799 * 22 21 20 44 44 H 1.09001 * 109.57573 * 62.32549 * 22 21 20 45 45 H 1.09002 * 109.48895 * 299.35175 * 23 16 15 46 46 H 1.09000 * 109.48895 * 179.28417 * 23 16 15 47 47 H 1.09010 * 109.48735 * 303.15856 * 24 13 12 48 48 H 1.09006 * 109.49174 * 63.21596 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6964 -1.2125 5 1 1.2854 2.7465 0.0006 6 1 3.1042 1.6963 1.2125 7 6 2.0104 -1.2020 -0.0005 8 1 3.0904 -1.2021 -0.0001 9 16 1.1293 -2.7280 -0.0019 10 6 2.5158 -3.8915 -0.0029 11 6 1.9793 -5.3243 -0.0036 12 6 3.1513 -6.3077 -0.0038 13 7 2.6361 -7.6835 -0.0038 14 6 3.7167 -8.6505 -0.2424 15 6 3.1545 -10.0714 -0.1558 16 7 2.0802 -10.2315 -1.1459 17 6 1.5651 -11.6071 -1.1459 18 6 2.6638 -12.5657 -1.6156 19 6 2.0942 -13.9850 -1.6898 20 8 0.9680 -14.0013 -2.5692 21 6 -0.1094 -13.1598 -2.1533 22 6 0.3708 -11.7071 -2.0999 23 6 0.9997 -9.2644 -0.9074 24 6 1.5620 -7.8436 -0.9939 25 1 -0.4849 0.8400 0.0004 26 1 3.1245 -3.7321 0.8872 27 1 3.1244 -3.7306 -0.8928 28 1 1.3704 -5.4839 -0.8934 29 1 1.3709 -5.4848 0.8865 30 1 3.7599 -6.1481 0.8863 31 1 3.7600 -6.1473 -0.8937 32 1 4.4939 -8.5205 0.5108 33 1 4.1394 -8.4864 -1.2336 34 1 3.9482 -10.7897 -0.3610 35 1 2.7563 -10.2446 0.8439 36 1 1.2506 -11.8788 -0.1382 37 1 3.0138 -12.2630 -2.6024 38 1 3.4943 -12.5415 -0.9101 39 1 1.7830 -14.3027 -0.6948 40 1 2.8590 -14.6645 -2.0657 41 1 -0.4495 -13.4667 -1.1643 42 1 -0.9321 -13.2446 -2.8632 43 1 -0.4368 -11.0694 -1.7405 44 1 0.6729 -11.3854 -3.0966 45 1 0.5771 -9.4285 0.0839 46 1 0.2226 -9.3944 -1.6605 47 1 0.7682 -7.1252 -0.7887 48 1 1.9601 -7.6703 -1.9937 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000175492342.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:42 Heat of formation + Delta-G solvation = -67.914348 kcal Electronic energy + Delta-G solvation = -24071.205084 eV Core-core repulsion = 20671.814468 eV Total energy + Delta-G solvation = -3399.390615 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.177 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.04964 -39.68841 -37.33773 -34.65442 -34.48181 -32.63299 -32.36846 -31.49341 -28.49227 -27.73602 -25.71484 -25.43565 -24.17949 -23.57089 -22.03098 -21.02934 -20.71428 -19.55749 -17.94535 -16.96854 -16.90045 -16.86943 -16.55702 -16.25837 -16.02989 -15.89638 -15.85659 -15.56290 -15.16171 -14.79080 -14.73254 -14.34250 -14.14995 -13.73989 -13.47008 -13.35497 -13.16049 -12.91128 -12.83161 -12.61811 -12.51492 -12.45656 -12.25095 -12.23025 -12.07626 -11.75623 -11.66750 -11.35133 -11.25589 -11.17114 -11.13029 -10.56390 -10.32933 -9.43110 -9.25178 -8.67487 -8.37851 -6.14306 1.30665 1.40348 1.47107 1.73135 2.27726 2.74423 2.88572 2.96146 3.01477 3.31475 3.64598 3.83272 3.87091 3.95231 3.98999 4.06348 4.17696 4.17968 4.25631 4.28718 4.35573 4.39863 4.43736 4.47705 4.52571 4.54435 4.59348 4.69169 4.72926 4.75078 4.80898 4.83709 4.89090 4.90628 5.00511 5.05308 5.10198 5.13668 5.18127 5.25354 5.31990 5.38767 5.94193 5.96406 6.14485 6.17041 6.17394 6.26694 7.04087 8.71281 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.038452 B = 0.001983 C = 0.001912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.003022 B =14113.254638 C =14643.378795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.014 3.986 3 Si 0.994 3.006 4 H -0.265 1.265 5 H -0.274 1.274 6 H -0.264 1.264 7 C -0.539 4.539 8 H 0.073 0.927 9 S -0.197 6.197 10 C -0.087 4.087 11 C -0.087 4.087 12 C 0.071 3.929 13 N -0.545 5.545 14 C 0.057 3.943 15 C 0.061 3.939 16 N -0.542 5.542 17 C 0.085 3.915 18 C -0.142 4.142 19 C 0.060 3.940 20 O -0.404 6.404 21 C 0.062 3.938 22 C -0.150 4.150 23 C 0.061 3.939 24 C 0.051 3.949 25 H 0.272 0.728 26 H 0.063 0.937 27 H 0.060 0.940 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.082 0.918 31 H 0.035 0.965 32 H 0.090 0.910 33 H 0.035 0.965 34 H 0.096 0.904 35 H 0.037 0.963 36 H 0.042 0.958 37 H 0.068 0.932 38 H 0.084 0.916 39 H 0.058 0.942 40 H 0.107 0.893 41 H 0.058 0.942 42 H 0.105 0.895 43 H 0.081 0.919 44 H 0.069 0.931 45 H 0.037 0.963 46 H 0.091 0.909 47 H 0.081 0.919 48 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.403 -28.514 -1.911 29.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.191 4.191 3 Si 0.816 3.184 4 H -0.189 1.189 5 H -0.199 1.199 6 H -0.189 1.189 7 C -0.687 4.687 8 H 0.091 0.909 9 S 0.032 5.968 10 C -0.237 4.237 11 C -0.125 4.125 12 C -0.058 4.058 13 N -0.270 5.270 14 C -0.071 4.071 15 C -0.067 4.067 16 N -0.267 5.267 17 C -0.023 4.023 18 C -0.180 4.180 19 C -0.017 4.017 20 O -0.323 6.323 21 C -0.015 4.015 22 C -0.188 4.188 23 C -0.067 4.067 24 C -0.078 4.078 25 H 0.080 0.920 26 H 0.082 0.918 27 H 0.078 0.922 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.100 0.900 31 H 0.053 0.947 32 H 0.108 0.892 33 H 0.054 0.946 34 H 0.114 0.886 35 H 0.055 0.945 36 H 0.060 0.940 37 H 0.086 0.914 38 H 0.103 0.897 39 H 0.076 0.924 40 H 0.125 0.875 41 H 0.077 0.923 42 H 0.123 0.877 43 H 0.099 0.901 44 H 0.087 0.913 45 H 0.055 0.945 46 H 0.109 0.891 47 H 0.099 0.901 48 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 4.111 -28.704 -2.072 29.070 hybrid contribution 1.552 1.783 0.242 2.376 sum 5.663 -26.921 -1.829 27.571 Atomic orbital electron populations 1.70153 1.07661 1.28613 1.47907 1.26089 0.96075 1.03155 0.93774 0.85062 0.77933 0.76043 0.79352 1.18943 1.19929 1.18906 1.23008 0.94731 0.92004 1.58950 0.90928 1.84612 1.14013 1.01140 1.97035 1.23146 1.00166 0.97483 1.02873 1.21290 0.98008 0.90593 1.02644 1.22007 0.95868 0.86739 1.01168 1.62266 1.11362 1.03930 1.49450 1.22209 0.93237 0.91331 1.00324 1.22175 0.94799 0.96334 0.93377 1.62231 1.10971 1.03813 1.49701 1.21661 0.95121 0.87943 0.97602 1.22222 0.98197 0.94809 1.02755 1.22704 0.88454 0.96191 0.94311 1.87911 1.27141 1.66322 1.50956 1.22672 0.89465 0.88292 1.01068 1.22326 0.97813 0.98146 1.00478 1.22172 0.93681 0.90597 1.00289 1.22268 0.94992 0.97116 0.93374 0.91954 0.91808 0.92159 0.91586 0.91470 0.89995 0.94699 0.89208 0.94641 0.88571 0.94455 0.94029 0.91368 0.89729 0.92357 0.87467 0.92336 0.87674 0.90058 0.91253 0.94518 0.89067 0.90122 0.94915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.12 13.22 21.65 0.29 -54.83 16 2 C 0.01 0.80 5.49 84.86 0.47 1.27 16 3 Si 0.99 44.14 29.55 68.60 2.03 46.17 16 4 H -0.26 -11.26 7.11 99.48 0.71 -10.56 16 5 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 6 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 7 C -0.54 -31.43 9.50 67.95 0.65 -30.78 16 8 H 0.07 4.06 7.80 -2.91 -0.02 4.04 16 9 S -0.20 -10.57 21.44 -56.49 -1.21 -11.78 16 10 C -0.09 -3.53 5.67 71.98 0.41 -3.12 16 11 C -0.09 -2.81 4.48 30.59 0.14 -2.68 16 12 C 0.07 1.87 5.28 86.30 0.46 2.33 16 13 N -0.54 -13.00 4.86 -895.68 -4.35 -17.35 16 14 C 0.06 1.11 5.58 86.31 0.48 1.59 16 15 C 0.06 1.02 5.40 86.31 0.47 1.49 16 16 N -0.54 -9.73 4.58 -869.77 -3.98 -13.72 16 17 C 0.08 1.25 2.03 45.04 0.09 1.35 16 18 C -0.14 -1.80 5.25 30.69 0.16 -1.64 16 19 C 0.06 0.71 6.84 72.02 0.49 1.20 16 20 O -0.40 -6.62 10.77 -148.98 -1.60 -8.23 16 21 C 0.06 0.79 6.84 72.01 0.49 1.28 16 22 C -0.15 -2.11 4.77 30.69 0.15 -1.96 16 23 C 0.06 1.19 5.10 86.31 0.44 1.63 16 24 C 0.05 1.19 4.93 86.31 0.43 1.62 16 25 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 26 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 27 H 0.06 2.41 8.14 -2.40 -0.02 2.39 16 28 H 0.07 2.17 6.26 -2.39 -0.01 2.16 16 29 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 30 H 0.08 2.05 8.14 -2.38 -0.02 2.03 16 31 H 0.03 0.91 8.08 -2.39 -0.02 0.89 16 32 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.10 1.27 6.38 -2.39 -0.02 1.26 16 35 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.04 0.63 8.13 -2.39 -0.02 0.61 16 37 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.08 0.87 6.63 -2.39 -0.02 0.86 16 39 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 40 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 42 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.08 1.06 6.47 -2.39 -0.02 1.04 16 44 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 45 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 46 H 0.09 1.61 6.08 -2.39 -0.01 1.60 16 47 H 0.08 2.05 5.99 -2.38 -0.01 2.04 16 48 H 0.03 0.83 8.14 -2.38 -0.02 0.81 16 Total: -1.00 -67.55 375.17 -2.62 -70.17 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: 0.91 Total: 16.00 kcal Atomic # 6 Polarization: -31.74 SS G_CDS: 5.31 Total: -26.43 kcal Atomic # 7 Polarization: -77.85 SS G_CDS: -8.05 Total: -85.89 kcal Atomic # 8 Polarization: -6.62 SS G_CDS: -1.60 Total: -8.23 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Atomic # 16 Polarization: -10.57 SS G_CDS: -1.21 Total: -11.78 kcal Total: -67.55 -2.62 -70.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175492342.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.251 kcal (2) G-P(sol) polarization free energy of solvation -67.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds