Wall clock time and date at job start Tue Mar 31 2020 11:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38236 * 120.00082 * 2 1 4 4 C 1.38228 * 119.99847 * 179.97438 * 3 2 1 5 5 C 1.50697 * 119.99983 * 180.02562 * 4 3 2 6 6 C 1.38236 * 120.00163 * 359.97438 * 4 3 2 7 7 C 1.50698 * 120.00393 * 180.02562 * 6 4 3 8 8 C 1.50706 * 109.47294 * 89.99654 * 7 6 4 9 9 O 1.21279 * 119.99507 * 0.02562 * 8 7 6 10 10 N 1.34774 * 120.00020 * 180.02562 * 8 7 6 11 11 C 1.46496 * 119.99544 * 180.02562 * 10 8 7 12 12 C 1.50699 * 109.47598 * 90.00303 * 11 10 8 13 13 H 1.08005 * 119.99628 * 359.97438 * 12 11 10 14 14 C 1.37877 * 120.00538 * 179.97438 * 12 11 10 15 15 N 1.31511 * 119.99774 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00058 * 179.97438 * 14 12 11 17 17 H 1.48494 * 109.46901 * 90.00358 * 16 14 12 18 18 H 1.48498 * 109.46773 * 209.99999 * 16 14 12 19 19 H 1.48494 * 109.46962 * 330.00109 * 16 14 12 20 20 C 1.46495 * 119.99828 * 0.02562 * 10 8 7 21 21 C 1.53004 * 109.46986 * 90.00387 * 20 10 8 22 22 C 1.47205 * 109.46941 * 179.97438 * 21 20 10 23 23 N 9.36887 * 165.70071 * 308.50985 * 2 1 3 24 24 C 1.38237 * 119.99938 * 0.27676 * 6 4 3 25 25 C 1.50700 * 120.00162 * 179.72779 * 24 6 4 26 26 C 1.38232 * 119.99638 * 179.97438 * 2 1 3 27 27 H 1.09002 * 109.46915 * 90.00200 * 1 2 3 28 28 H 1.09000 * 109.47189 * 209.99952 * 1 2 3 29 29 H 1.08996 * 109.46972 * 330.00543 * 1 2 3 30 30 H 1.07992 * 119.99773 * 359.97438 * 3 2 1 31 31 H 1.09003 * 109.47047 * 269.97521 * 5 4 3 32 32 H 1.08992 * 109.47301 * 29.97107 * 5 4 3 33 33 H 1.09004 * 109.47311 * 149.97670 * 5 4 3 34 34 H 1.09001 * 109.46665 * 330.00035 * 7 6 4 35 35 H 1.09000 * 109.47722 * 210.00366 * 7 6 4 36 36 H 1.09008 * 109.47096 * 209.99661 * 11 10 8 37 37 H 1.09003 * 109.47776 * 329.99537 * 11 10 8 38 38 H 0.97002 * 119.99965 * 179.97438 * 15 14 12 39 39 H 1.09004 * 109.46971 * 209.99938 * 20 10 8 40 40 H 1.08993 * 109.47768 * 330.00002 * 20 10 8 41 41 H 1.08996 * 109.46936 * 299.99297 * 21 20 10 42 42 H 1.08997 * 109.47532 * 59.99922 * 21 20 10 43 43 H 1.09001 * 109.47014 * 89.99702 * 25 24 6 44 44 H 1.08996 * 109.47283 * 209.99818 * 25 24 6 45 45 H 1.09004 * 109.46914 * 330.00169 * 25 24 6 46 46 H 1.07999 * 120.00384 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1971 0.0005 5 6 4.3341 2.5021 0.0011 6 6 4.2717 -0.0001 0.0016 7 6 5.7787 -0.0002 0.0028 8 6 6.2800 0.0005 1.4240 9 8 5.4911 0.0006 2.3452 10 7 7.6048 0.0010 1.6713 11 6 8.0920 0.0011 3.0529 12 6 8.2598 -1.4196 3.5266 13 1 8.0264 -2.2406 2.8647 14 6 8.7112 -1.6715 4.8048 15 7 8.9949 -0.6718 5.6108 16 14 8.9184 -3.4326 5.3921 17 1 10.2935 -3.8994 5.0815 18 1 8.6940 -3.4949 6.8587 19 1 7.9326 -4.3034 4.7030 20 6 8.5576 0.0015 0.5585 21 6 8.8887 1.4442 0.1713 22 6 9.8466 1.4447 -0.9465 23 7 10.5857 1.4408 -1.8107 24 6 3.5805 -1.1972 -0.0036 25 6 4.3339 -2.5023 -0.0087 26 6 2.1981 -1.1972 0.0005 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5137 30 1 1.6583 2.1324 -0.0004 31 1 4.5165 2.8168 -1.0264 32 1 3.7447 3.2618 0.5144 33 1 5.2861 2.3718 0.5157 34 1 6.1424 0.8896 -0.5112 35 1 6.1424 -0.8904 -0.5104 36 1 9.0520 0.5153 3.0996 37 1 7.3734 0.5147 3.6916 38 1 9.3121 -0.8490 6.5102 39 1 9.4702 -0.5120 0.8613 40 1 8.1182 -0.5124 -0.2964 41 1 7.9762 1.9577 -0.1316 42 1 9.3283 1.9582 1.0261 43 1 4.5152 -2.8212 1.0178 44 1 3.7451 -3.2598 -0.5258 45 1 5.2866 -2.3699 -0.5215 46 1 1.6581 -2.1325 0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179822019.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:00 Heat of formation + Delta-G solvation = -3.500901 kcal Electronic energy + Delta-G solvation = -26214.119927 eV Core-core repulsion = 22682.078537 eV Total energy + Delta-G solvation = -3532.041390 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.17586 -38.75251 -36.82670 -35.22912 -34.17894 -33.45973 -32.86382 -30.83220 -29.93182 -27.86475 -27.25853 -26.60488 -25.08716 -23.99010 -22.62470 -20.65124 -20.04738 -18.43595 -17.62437 -16.61323 -16.45514 -16.21010 -15.87800 -15.15919 -14.71988 -14.37469 -14.26450 -14.12831 -13.93358 -13.58639 -13.25100 -13.10515 -12.93741 -12.82007 -12.67009 -12.61376 -12.54577 -12.41815 -12.33697 -12.16143 -11.84749 -11.66009 -11.39537 -11.27166 -11.07381 -10.99107 -10.87927 -10.74557 -10.67612 -10.55371 -10.18818 -9.70324 -9.03969 -8.47322 -8.35966 -8.18336 -7.82702 -6.08736 -4.13114 1.49269 1.56581 2.71927 2.80055 3.27810 3.32459 3.35668 3.40272 3.62013 3.86103 4.27113 4.42489 4.78151 4.83618 4.93455 4.96867 5.06541 5.10346 5.20068 5.23532 5.29529 5.36935 5.39887 5.44262 5.53584 5.54939 5.57738 5.64554 5.68948 5.79782 5.83365 5.85092 5.89723 5.97443 6.06934 6.09107 6.33752 6.41399 6.66325 6.70325 6.86148 6.95011 7.21329 7.37256 7.44467 7.56931 7.87534 8.17940 8.28180 8.85462 9.02020 9.52450 10.99405 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.009716 B = 0.004581 C = 0.003526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2881.084372 B = 6110.830865 C = 7939.204396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.086 4.086 3 C -0.128 4.128 4 C -0.065 4.065 5 C -0.116 4.116 6 C -0.062 4.062 7 C -0.113 4.113 8 C 0.511 3.489 9 O -0.521 6.521 10 N -0.600 5.600 11 C 0.245 3.755 12 C -0.527 4.527 13 H 0.058 0.942 14 C 0.063 3.937 15 N -0.894 5.894 16 Si 0.895 3.105 17 H -0.280 1.280 18 H -0.285 1.285 19 H -0.274 1.274 20 C 0.117 3.883 21 C -0.051 4.051 22 C 0.217 3.783 23 N -0.445 5.445 24 C -0.062 4.062 25 C -0.119 4.119 26 C -0.127 4.127 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.117 0.883 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.094 0.906 35 H 0.099 0.901 36 H 0.034 0.966 37 H 0.046 0.954 38 H 0.263 0.737 39 H 0.094 0.906 40 H 0.075 0.925 41 H 0.105 0.895 42 H 0.117 0.883 43 H 0.077 0.923 44 H 0.062 0.938 45 H 0.067 0.933 46 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.679 3.594 -13.666 17.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.086 4.086 3 C -0.146 4.146 4 C -0.065 4.065 5 C -0.173 4.173 6 C -0.063 4.063 7 C -0.152 4.152 8 C 0.297 3.703 9 O -0.396 6.396 10 N -0.332 5.332 11 C 0.127 3.873 12 C -0.566 4.566 13 H 0.076 0.924 14 C -0.139 4.139 15 N -0.533 5.533 16 Si 0.723 3.277 17 H -0.207 1.207 18 H -0.211 1.211 19 H -0.199 1.199 20 C -0.009 4.009 21 C -0.093 4.093 22 C -0.101 4.101 23 N -0.123 5.123 24 C -0.062 4.062 25 C -0.175 4.175 26 C -0.145 4.145 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.135 0.865 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.113 0.887 35 H 0.117 0.883 36 H 0.052 0.948 37 H 0.064 0.936 38 H 0.073 0.927 39 H 0.112 0.888 40 H 0.093 0.907 41 H 0.123 0.877 42 H 0.135 0.865 43 H 0.096 0.904 44 H 0.081 0.919 45 H 0.085 0.915 46 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -9.934 3.629 -14.230 17.730 hybrid contribution -0.027 -0.973 0.838 1.285 sum -9.961 2.656 -13.392 16.900 Atomic orbital electron populations 1.20747 0.91595 1.02561 1.01834 1.19781 0.95649 0.93184 1.00024 1.20750 0.93332 0.97271 1.03285 1.19619 0.93588 0.94606 0.98674 1.20821 1.00529 0.94194 1.01720 1.18988 0.93678 0.92381 1.01241 1.20901 0.93179 1.04365 0.96803 1.20170 0.82549 0.77505 0.90099 1.90715 1.54464 1.48298 1.46101 1.48224 1.04255 1.72148 1.08551 1.19327 0.95115 0.97605 0.75282 1.21412 1.44361 0.92312 0.98520 0.92416 1.24906 0.95313 0.97280 0.96436 1.69916 1.45012 1.30693 1.07632 0.86539 0.78311 0.84810 0.78034 1.20654 1.21123 1.19900 1.21301 0.95936 0.92973 0.90734 1.19919 0.95478 1.01708 0.92157 1.29156 0.93847 0.93080 0.94032 1.81256 1.10671 1.08674 1.11688 1.19661 0.93607 0.94749 0.98154 1.20876 0.99662 0.93911 1.03100 1.20764 0.93328 0.97321 1.03105 0.91566 0.91762 0.91776 0.86519 0.91371 0.91555 0.91292 0.88732 0.88308 0.94824 0.93627 0.92699 0.88771 0.90683 0.87653 0.86467 0.90417 0.91888 0.91461 0.86496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.04 10.01 36.01 0.36 -0.67 16 2 C -0.09 -1.08 5.88 -104.62 -0.62 -1.70 16 3 C -0.13 -1.65 9.36 -39.59 -0.37 -2.02 16 4 C -0.06 -0.89 5.88 -104.63 -0.62 -1.50 16 5 C -0.12 -1.30 9.19 36.00 0.33 -0.97 16 6 C -0.06 -0.91 4.37 -104.62 -0.46 -1.37 16 7 C -0.11 -1.51 3.30 -29.03 -0.10 -1.61 16 8 C 0.51 9.31 7.26 -10.98 -0.08 9.23 16 9 O -0.52 -12.15 15.61 5.56 0.09 -12.06 16 10 N -0.60 -10.77 2.46 -175.06 -0.43 -11.20 16 11 C 0.25 5.76 5.16 -5.20 -0.03 5.74 16 12 C -0.53 -13.98 9.39 -34.44 -0.32 -14.30 16 13 H 0.06 1.53 7.81 -52.48 -0.41 1.12 16 14 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 15 N -0.89 -25.47 13.29 55.43 0.74 -24.74 16 16 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 17 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 18 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 19 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 20 C 0.12 1.52 5.17 -4.04 -0.02 1.50 16 21 C -0.05 -0.52 6.03 -29.51 -0.18 -0.70 16 22 C 0.22 2.56 15.44 -20.72 -0.32 2.24 16 23 N -0.45 -6.44 18.54 42.20 0.78 -5.66 16 24 C -0.06 -0.89 5.88 -104.62 -0.62 -1.51 16 25 C -0.12 -1.55 9.60 36.01 0.35 -1.21 16 26 C -0.13 -1.69 9.36 -39.58 -0.37 -2.07 16 27 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.56 8.09 -51.93 -0.42 0.14 16 29 H 0.06 0.55 8.09 -51.93 -0.42 0.13 16 30 H 0.12 1.25 8.06 -52.49 -0.42 0.82 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.69 8.08 -51.93 -0.42 0.27 16 33 H 0.07 0.83 6.37 -51.93 -0.33 0.50 16 34 H 0.09 1.00 5.75 -51.93 -0.30 0.70 16 35 H 0.10 1.17 5.20 -51.93 -0.27 0.90 16 36 H 0.03 0.78 8.07 -51.92 -0.42 0.36 16 37 H 0.05 1.24 7.42 -51.93 -0.39 0.85 16 38 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 39 H 0.09 1.31 8.07 -51.93 -0.42 0.89 16 40 H 0.07 0.80 6.44 -51.93 -0.33 0.47 16 41 H 0.11 0.85 7.22 -51.93 -0.38 0.48 16 42 H 0.12 1.19 8.14 -51.93 -0.42 0.76 16 43 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 44 H 0.06 0.67 8.09 -51.93 -0.42 0.25 16 45 H 0.07 0.80 5.94 -51.93 -0.31 0.49 16 46 H 0.12 1.33 8.06 -52.49 -0.42 0.90 16 LS Contribution 385.12 15.07 5.80 5.80 Total: -1.00 -33.50 385.12 -8.09 -41.59 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -6.90 Total: -0.62 kcal Atomic # 6 Polarization: -6.15 SS G_CDS: -3.15 Total: -9.30 kcal Atomic # 7 Polarization: -42.68 SS G_CDS: 1.09 Total: -41.59 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: 0.09 Total: -12.06 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.50 -8.09 -41.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179822019.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.089 kcal (2) G-P(sol) polarization free energy of solvation -33.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds