Wall clock time and date at job start Tue Mar 31 2020 11:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38236 * 120.00082 * 2 1 4 4 C 1.38228 * 119.99847 * 179.97438 * 3 2 1 5 5 C 1.50697 * 119.99983 * 180.02562 * 4 3 2 6 6 C 1.38236 * 120.00163 * 359.97438 * 4 3 2 7 7 C 1.50698 * 120.00393 * 180.02562 * 6 4 3 8 8 C 1.50706 * 109.47294 * 89.99654 * 7 6 4 9 9 O 1.21279 * 119.99507 * 0.02562 * 8 7 6 10 10 N 1.34774 * 120.00020 * 180.02562 * 8 7 6 11 11 C 1.46496 * 119.99544 * 180.02562 * 10 8 7 12 12 C 1.50699 * 109.47598 * 90.00303 * 11 10 8 13 13 H 1.08005 * 119.99628 * 359.97438 * 12 11 10 14 14 C 1.37877 * 120.00538 * 179.97438 * 12 11 10 15 15 N 1.31511 * 119.99774 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00058 * 179.97438 * 14 12 11 17 17 H 1.48494 * 109.46901 * 90.00358 * 16 14 12 18 18 H 1.48498 * 109.46773 * 209.99999 * 16 14 12 19 19 H 1.48494 * 109.46962 * 330.00109 * 16 14 12 20 20 C 1.46495 * 119.99828 * 0.02562 * 10 8 7 21 21 C 1.53004 * 109.46986 * 90.00387 * 20 10 8 22 22 C 1.47205 * 109.46941 * 179.97438 * 21 20 10 23 23 N 9.36887 * 165.70071 * 308.50985 * 2 1 3 24 24 C 1.38237 * 119.99938 * 0.27676 * 6 4 3 25 25 C 1.50700 * 120.00162 * 179.72779 * 24 6 4 26 26 C 1.38232 * 119.99638 * 179.97438 * 2 1 3 27 27 H 1.09002 * 109.46915 * 90.00200 * 1 2 3 28 28 H 1.09000 * 109.47189 * 209.99952 * 1 2 3 29 29 H 1.08996 * 109.46972 * 330.00543 * 1 2 3 30 30 H 1.07992 * 119.99773 * 359.97438 * 3 2 1 31 31 H 1.09003 * 109.47047 * 269.97521 * 5 4 3 32 32 H 1.08992 * 109.47301 * 29.97107 * 5 4 3 33 33 H 1.09004 * 109.47311 * 149.97670 * 5 4 3 34 34 H 1.09001 * 109.46665 * 330.00035 * 7 6 4 35 35 H 1.09000 * 109.47722 * 210.00366 * 7 6 4 36 36 H 1.09008 * 109.47096 * 209.99661 * 11 10 8 37 37 H 1.09003 * 109.47776 * 329.99537 * 11 10 8 38 38 H 0.97002 * 119.99965 * 179.97438 * 15 14 12 39 39 H 1.09004 * 109.46971 * 209.99938 * 20 10 8 40 40 H 1.08993 * 109.47768 * 330.00002 * 20 10 8 41 41 H 1.08996 * 109.46936 * 299.99297 * 21 20 10 42 42 H 1.08997 * 109.47532 * 59.99922 * 21 20 10 43 43 H 1.09001 * 109.47014 * 89.99702 * 25 24 6 44 44 H 1.08996 * 109.47283 * 209.99818 * 25 24 6 45 45 H 1.09004 * 109.46914 * 330.00169 * 25 24 6 46 46 H 1.07999 * 120.00384 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1971 0.0005 5 6 4.3341 2.5021 0.0011 6 6 4.2717 -0.0001 0.0016 7 6 5.7787 -0.0002 0.0028 8 6 6.2800 0.0005 1.4240 9 8 5.4911 0.0006 2.3452 10 7 7.6048 0.0010 1.6713 11 6 8.0920 0.0011 3.0529 12 6 8.2598 -1.4196 3.5266 13 1 8.0264 -2.2406 2.8647 14 6 8.7112 -1.6715 4.8048 15 7 8.9949 -0.6718 5.6108 16 14 8.9184 -3.4326 5.3921 17 1 10.2935 -3.8994 5.0815 18 1 8.6940 -3.4949 6.8587 19 1 7.9326 -4.3034 4.7030 20 6 8.5576 0.0015 0.5585 21 6 8.8887 1.4442 0.1713 22 6 9.8466 1.4447 -0.9465 23 7 10.5857 1.4408 -1.8107 24 6 3.5805 -1.1972 -0.0036 25 6 4.3339 -2.5023 -0.0087 26 6 2.1981 -1.1972 0.0005 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5137 30 1 1.6583 2.1324 -0.0004 31 1 4.5165 2.8168 -1.0264 32 1 3.7447 3.2618 0.5144 33 1 5.2861 2.3718 0.5157 34 1 6.1424 0.8896 -0.5112 35 1 6.1424 -0.8904 -0.5104 36 1 9.0520 0.5153 3.0996 37 1 7.3734 0.5147 3.6916 38 1 9.3121 -0.8490 6.5102 39 1 9.4702 -0.5120 0.8613 40 1 8.1182 -0.5124 -0.2964 41 1 7.9762 1.9577 -0.1316 42 1 9.3283 1.9582 1.0261 43 1 4.5152 -2.8212 1.0178 44 1 3.7451 -3.2598 -0.5258 45 1 5.2866 -2.3699 -0.5215 46 1 1.6581 -2.1325 0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000179822019.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:59 Heat of formation + Delta-G solvation = -21.193111 kcal Electronic energy + Delta-G solvation = -26214.887119 eV Core-core repulsion = 22682.078537 eV Total energy + Delta-G solvation = -3532.808582 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.33006 -39.99470 -37.93121 -36.63225 -35.24720 -34.74412 -34.41659 -32.13973 -31.05802 -28.95592 -28.73754 -27.54804 -26.27441 -25.28055 -24.24059 -21.62094 -21.10200 -19.76833 -18.80331 -18.31652 -17.89623 -17.23833 -17.17884 -16.55121 -16.01264 -15.68789 -15.55495 -15.16200 -15.04445 -14.66269 -14.33915 -14.23747 -14.02750 -13.88688 -13.78341 -13.64940 -13.57176 -13.52770 -13.50026 -13.40712 -13.11728 -12.94194 -12.71851 -12.65399 -12.49635 -12.37061 -12.17376 -11.98983 -11.85296 -11.66569 -11.65579 -11.58782 -10.57114 -10.55352 -9.43323 -9.34394 -9.18882 -8.16684 -6.28469 0.49133 0.57138 1.39132 1.41642 1.50671 1.70996 1.85765 1.96192 2.32828 2.46249 2.85391 3.14393 3.22067 3.76389 3.90976 3.96360 4.04323 4.06639 4.13908 4.19836 4.24332 4.44164 4.52152 4.57596 4.62052 4.67677 4.74964 4.83285 4.83467 4.86900 4.87698 4.91658 5.03432 5.07883 5.09929 5.14669 5.16947 5.36570 5.44439 5.45905 5.63748 5.69044 5.75431 5.85644 5.91451 6.15546 6.26098 6.62740 6.78364 6.85416 7.37046 7.59075 8.89914 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.009716 B = 0.004581 C = 0.003526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2881.084372 B = 6110.830865 C = 7939.204396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.092 4.092 3 C -0.142 4.142 4 C -0.078 4.078 5 C -0.115 4.115 6 C -0.088 4.088 7 C -0.099 4.099 8 C 0.509 3.491 9 O -0.580 6.580 10 N -0.599 5.599 11 C 0.261 3.739 12 C -0.537 4.537 13 H 0.053 0.947 14 C 0.012 3.988 15 N -0.926 5.926 16 Si 0.955 3.045 17 H -0.266 1.266 18 H -0.286 1.286 19 H -0.274 1.274 20 C 0.111 3.889 21 C -0.039 4.039 22 C 0.246 3.754 23 N -0.489 5.489 24 C -0.082 4.082 25 C -0.116 4.116 26 C -0.144 4.144 27 H 0.083 0.917 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.136 0.864 31 H 0.095 0.905 32 H 0.070 0.930 33 H 0.059 0.941 34 H 0.130 0.870 35 H 0.119 0.881 36 H 0.034 0.966 37 H 0.002 0.998 38 H 0.265 0.735 39 H 0.084 0.916 40 H 0.106 0.894 41 H 0.137 0.863 42 H 0.120 0.880 43 H 0.048 0.952 44 H 0.083 0.917 45 H 0.077 0.923 46 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.256 3.588 -15.680 19.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.092 4.092 3 C -0.160 4.160 4 C -0.078 4.078 5 C -0.172 4.172 6 C -0.089 4.089 7 C -0.138 4.138 8 C 0.298 3.702 9 O -0.460 6.460 10 N -0.330 5.330 11 C 0.140 3.860 12 C -0.576 4.576 13 H 0.071 0.929 14 C -0.187 4.187 15 N -0.566 5.566 16 Si 0.780 3.220 17 H -0.192 1.192 18 H -0.211 1.211 19 H -0.199 1.199 20 C -0.013 4.013 21 C -0.080 4.080 22 C -0.071 4.071 23 N -0.167 5.167 24 C -0.082 4.082 25 C -0.173 4.173 26 C -0.162 4.162 27 H 0.101 0.899 28 H 0.087 0.913 29 H 0.090 0.910 30 H 0.154 0.846 31 H 0.114 0.886 32 H 0.089 0.911 33 H 0.078 0.922 34 H 0.148 0.852 35 H 0.136 0.864 36 H 0.052 0.948 37 H 0.020 0.980 38 H 0.073 0.927 39 H 0.102 0.898 40 H 0.124 0.876 41 H 0.154 0.846 42 H 0.138 0.862 43 H 0.067 0.933 44 H 0.102 0.898 45 H 0.096 0.904 46 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -10.483 3.623 -16.297 19.713 hybrid contribution 0.080 -0.949 1.474 1.755 sum -10.404 2.674 -14.822 18.305 Atomic orbital electron populations 1.20794 0.89421 1.03214 1.03090 1.20201 0.97403 0.92887 0.98730 1.21093 0.93441 0.98303 1.03180 1.20005 0.94314 0.95359 0.98102 1.20869 0.99753 0.93197 1.03356 1.19209 0.94232 0.92903 1.02509 1.20871 0.92812 1.06898 0.93247 1.21001 0.81803 0.75703 0.91648 1.90686 1.55928 1.50932 1.48413 1.48089 1.05326 1.71890 1.07703 1.18767 0.93744 0.95540 0.77942 1.21755 1.43590 0.93591 0.98678 0.92873 1.25697 0.95267 1.00987 0.96776 1.70023 1.46082 1.32572 1.07944 0.85602 0.78756 0.80317 0.77282 1.19151 1.21130 1.19920 1.21537 0.94695 0.95211 0.89877 1.19850 0.96450 0.99959 0.91750 1.29173 0.92930 0.91736 0.93282 1.81302 1.12076 1.10014 1.13286 1.19959 0.94412 0.95262 0.98610 1.20858 1.00610 0.94166 1.01626 1.21052 0.93310 0.98417 1.03442 0.89891 0.91299 0.90954 0.84621 0.88637 0.91093 0.92244 0.85249 0.86363 0.94839 0.98034 0.92658 0.89791 0.87571 0.84553 0.86172 0.93302 0.89811 0.90387 0.85180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.82 10.01 71.24 0.71 -1.10 16 2 C -0.09 -2.20 5.88 -19.86 -0.12 -2.31 16 3 C -0.14 -3.45 9.36 22.27 0.21 -3.24 16 4 C -0.08 -2.02 5.88 -19.87 -0.12 -2.13 16 5 C -0.12 -2.34 9.19 71.23 0.65 -1.68 16 6 C -0.09 -2.47 4.37 -19.87 -0.09 -2.56 16 7 C -0.10 -2.46 3.30 29.10 0.10 -2.37 16 8 C 0.51 18.43 7.26 87.66 0.64 19.06 16 9 O -0.58 -27.94 15.61 -3.02 -0.05 -27.99 16 10 N -0.60 -21.27 2.46 -826.16 -2.03 -23.30 16 11 C 0.26 12.59 5.16 85.63 0.44 13.03 16 12 C -0.54 -29.01 9.39 25.60 0.24 -28.77 16 13 H 0.05 2.85 7.81 -2.91 -0.02 2.82 16 14 C 0.01 0.65 5.46 84.66 0.46 1.11 16 15 N -0.93 -53.91 13.29 21.45 0.28 -53.63 16 16 Si 0.95 43.80 29.54 68.60 2.03 45.82 16 17 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 18 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 19 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 20 C 0.11 2.67 5.17 86.38 0.45 3.11 16 21 C -0.04 -0.69 6.03 28.79 0.17 -0.51 16 22 C 0.25 5.19 15.44 89.43 1.38 6.57 16 23 N -0.49 -13.26 18.54 20.02 0.37 -12.88 16 24 C -0.08 -2.33 5.88 -19.86 -0.12 -2.45 16 25 C -0.12 -2.96 9.60 71.24 0.68 -2.28 16 26 C -0.14 -3.73 9.36 22.27 0.21 -3.53 16 27 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.07 1.08 8.09 -2.39 -0.02 1.06 16 29 H 0.07 1.09 8.09 -2.39 -0.02 1.07 16 30 H 0.14 2.63 8.06 -2.91 -0.02 2.60 16 31 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.07 1.35 8.08 -2.39 -0.02 1.33 16 33 H 0.06 1.31 6.37 -2.39 -0.02 1.29 16 34 H 0.13 2.24 5.75 -2.39 -0.01 2.23 16 35 H 0.12 2.46 5.20 -2.39 -0.01 2.44 16 36 H 0.03 1.60 8.07 -2.38 -0.02 1.58 16 37 H 0.00 0.09 7.42 -2.39 -0.02 0.07 16 38 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 39 H 0.08 2.22 8.07 -2.38 -0.02 2.20 16 40 H 0.11 1.91 6.44 -2.39 -0.02 1.90 16 41 H 0.14 1.64 7.22 -2.39 -0.02 1.62 16 42 H 0.12 2.17 8.14 -2.39 -0.02 2.15 16 43 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 44 H 0.08 1.70 8.09 -2.39 -0.02 1.68 16 45 H 0.08 1.74 5.94 -2.39 -0.01 1.72 16 46 H 0.13 2.84 8.06 -2.91 -0.02 2.82 16 Total: -1.00 -76.02 385.12 7.50 -68.52 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: 0.98 Total: 13.48 kcal Atomic # 6 Polarization: -15.94 SS G_CDS: 5.91 Total: -10.03 kcal Atomic # 7 Polarization: -88.44 SS G_CDS: -1.37 Total: -89.81 kcal Atomic # 8 Polarization: -27.94 SS G_CDS: -0.05 Total: -27.99 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.82 kcal Total: -76.02 7.50 -68.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179822019.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.329 kcal (2) G-P(sol) polarization free energy of solvation -76.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds