Wall clock time and date at job start Tue Mar 31 2020 11:05:16
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31515 * 1
3 3 Si 1.86795 * 120.00429 * 2 1
4 4 H 1.48497 * 109.47406 * 179.97438 * 3 2 1
5 5 H 1.48502 * 109.46779 * 299.99655 * 3 2 1
6 6 H 1.48496 * 109.47447 * 59.99193 * 3 2 1
7 7 C 1.37878 * 119.99733 * 179.97438 * 2 1 3
8 8 H 1.07995 * 120.00199 * 180.02562 * 7 2 1
9 9 C 1.50705 * 120.00004 * 0.02562 * 7 2 1
10 10 N 1.46501 * 109.47184 * 179.97438 * 9 7 2
11 11 C 1.46500 * 120.00121 * 89.99912 * 10 9 7
12 12 C 1.50690 * 109.47370 * 89.99928 * 11 10 9
13 13 C 1.38682 * 120.41929 * 269.72479 * 12 11 10
14 14 C 1.38625 * 118.41677 * 180.27483 * 13 12 11
15 15 C 1.38221 * 119.16809 * 0.02562 * 14 13 12
16 16 N 1.31860 * 120.76138 * 359.97438 * 15 14 13
17 17 C 1.31881 * 121.72574 * 359.97438 * 16 15 14
18 18 C 1.34778 * 119.99725 * 270.00003 * 10 9 7
19 19 O 1.21280 * 119.99805 * 179.97438 * 18 10 9
20 20 C 1.50699 * 120.00030 * 359.97438 * 18 10 9
21 21 H 1.09000 * 115.57064 * 34.15794 * 20 18 10
22 22 C 1.52305 * 117.53512 * 179.97438 * 20 18 10
23 23 H 1.08997 * 115.91893 * 0.85470 * 22 20 18
24 24 C 1.52071 * 119.83709 * 217.19702 * 22 20 18
25 25 C 1.52870 * 110.51788 * 310.45331 * 24 22 20
26 26 C 1.53306 * 108.58817 * 305.11203 * 25 24 22
27 27 C 1.52874 * 108.58414 * 74.44292 * 26 25 24
28 28 C 1.52074 * 60.63420 * 107.38029 * 22 20 18
29 29 H 1.08997 * 117.25157 * 252.85993 * 28 22 20
30 30 H 0.97006 * 119.99605 * 0.02562 * 1 2 3
31 31 H 1.08994 * 109.46904 * 59.99647 * 9 7 2
32 32 H 1.09006 * 109.46702 * 299.99566 * 9 7 2
33 33 H 1.08999 * 109.46913 * 329.99850 * 11 10 9
34 34 H 1.09002 * 109.47149 * 210.00368 * 11 10 9
35 35 H 1.07993 * 120.78870 * 0.26805 * 13 12 11
36 36 H 1.08004 * 120.41613 * 179.97438 * 14 13 12
37 37 H 1.07993 * 119.62352 * 180.02562 * 15 14 13
38 38 H 1.08003 * 119.62232 * 180.02562 * 17 16 15
39 39 H 1.09002 * 109.27167 * 70.72142 * 24 22 20
40 40 H 1.09004 * 109.26866 * 190.18263 * 24 22 20
41 41 H 1.08993 * 109.61904 * 185.38497 * 25 24 22
42 42 H 1.08997 * 109.76580 * 64.92854 * 25 24 22
43 43 H 1.09007 * 109.61827 * 314.70948 * 26 25 24
44 44 H 1.09004 * 109.76619 * 194.26014 * 26 25 24
45 45 H 1.08997 * 109.35853 * 185.27085 * 27 26 25
46 46 H 1.08995 * 109.36223 * 65.68412 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6176 0.0000
4 1 3.7092 1.3462 0.0006
5 1 1.8906 2.3963 -1.2126
6 1 1.8905 2.3965 1.2123
7 6 2.0045 -1.1941 0.0005
8 1 3.0844 -1.1942 0.0010
9 6 1.2509 -2.4992 0.0005
10 7 2.2028 -3.6128 0.0005
11 6 2.6788 -4.1696 1.2692
12 6 1.7622 -5.2836 1.7043
13 6 0.6653 -5.0163 2.5097
14 6 -0.1471 -6.0733 2.8901
15 6 0.1612 -7.3494 2.4576
16 7 1.2127 -7.5665 1.6922
17 6 2.0068 -6.5853 1.3102
18 6 2.6407 -4.1250 -1.1667
19 8 3.4291 -5.0465 -1.1667
20 6 2.1506 -3.5526 -2.4718
21 1 1.9591 -2.4795 -2.4725
22 6 2.6823 -4.1735 -3.7568
23 1 3.3754 -5.0055 -3.6327
24 6 2.9756 -3.2899 -4.9592
25 6 1.7872 -2.3746 -5.2541
26 6 0.5335 -3.2406 -5.4230
27 6 0.0893 -3.7289 -4.0441
28 6 1.2439 -4.4384 -3.3401
29 1 1.0091 -5.4331 -2.9615
30 1 -0.4850 0.8401 -0.0004
31 1 0.6246 -2.5570 -0.8896
32 1 0.6239 -2.5567 0.8904
33 1 2.6867 -3.3879 2.0289
34 1 3.6883 -4.5596 1.1389
35 1 0.4492 -4.0088 2.8330
36 1 -1.0095 -5.9019 3.5172
37 1 -0.4669 -8.1781 2.7491
38 1 2.8588 -6.8016 0.6826
39 1 3.8557 -2.6811 -4.7521
40 1 3.1701 -3.9182 -5.8285
41 1 1.9734 -1.8174 -6.1721
42 1 1.6432 -1.6795 -4.4270
43 1 0.7626 -4.0964 -6.0581
44 1 -0.2633 -2.6511 -5.8767
45 1 -0.7448 -4.4213 -4.1574
46 1 -0.2302 -2.8766 -3.4446
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000245494962.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:05:16
Heat of formation + Delta-G solvation = -9.712629 kcal
Electronic energy + Delta-G solvation = -26794.524530 eV
Core-core repulsion = 23262.213779 eV
Total energy + Delta-G solvation = -3532.310751 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 314.174 amu
Computer time = 0.75 seconds
Orbital eigenvalues (eV)
-41.63936 -40.96138 -39.40018 -36.91384 -34.87073 -34.02267 -33.45234 -32.58993
-31.66967 -29.36520 -28.02938 -25.96627 -24.95232 -24.36091 -23.59466 -23.38615
-22.31106 -20.12755 -19.08758 -18.67597 -18.29970 -17.91640 -17.22619 -17.14420
-16.54748 -16.47511 -15.99615 -15.42199 -15.18586 -14.85791 -14.82576 -14.58155
-14.40679 -14.27190 -14.03244 -13.97383 -13.52011 -13.24235 -13.15604 -13.11424
-12.87986 -12.68036 -12.60917 -12.50478 -12.12319 -11.96875 -11.72887 -11.71256
-11.18155 -10.99642 -10.78950 -10.68654 -10.58600 -10.52892 -10.44754 -9.97629
-9.50814 -8.21193 -6.35391 0.10244 0.30450 1.38316 1.42298 1.51629
1.59150 2.24622 2.41679 2.86625 2.92000 3.09229 3.49656 3.57241
3.78707 3.83019 3.85099 3.88835 4.04075 4.05212 4.08225 4.14263
4.23940 4.39936 4.43352 4.50228 4.64702 4.66444 4.69690 4.72263
4.83243 4.84483 4.86222 5.03810 5.04818 5.13568 5.14837 5.21722
5.24960 5.34246 5.34406 5.35819 5.45020 5.56305 5.64943 5.75736
5.80559 6.05034 6.51989 6.79520 6.98111 7.28284 7.39662 8.84357
Molecular weight = 314.17amu
Principal moments of inertia in cm(-1)
A = 0.008657 B = 0.005958 C = 0.004107
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3233.540907 B = 4698.197318 C = 6816.760339
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.915 5.915
2 C 0.027 3.973
3 Si 0.952 3.048
4 H -0.273 1.273
5 H -0.277 1.277
6 H -0.277 1.277
7 C -0.545 4.545
8 H 0.050 0.950
9 C 0.261 3.739
10 N -0.590 5.590
11 C 0.161 3.839
12 C -0.156 4.156
13 C -0.069 4.069
14 C -0.166 4.166
15 C 0.089 3.911
16 N -0.511 5.511
17 C 0.103 3.897
18 C 0.541 3.459
19 O -0.590 6.590
20 C -0.194 4.194
21 H 0.116 0.884
22 C -0.098 4.098
23 H 0.098 0.902
24 C -0.083 4.083
25 C -0.126 4.126
26 C -0.109 4.109
27 C -0.090 4.090
28 C -0.107 4.107
29 H 0.091 0.909
30 H 0.268 0.732
31 H 0.024 0.976
32 H 0.022 0.978
33 H 0.091 0.909
34 H 0.080 0.920
35 H 0.139 0.861
36 H 0.168 0.832
37 H 0.188 0.812
38 H 0.143 0.857
39 H 0.064 0.936
40 H 0.093 0.907
41 H 0.084 0.916
42 H 0.042 0.958
43 H 0.079 0.921
44 H 0.075 0.925
45 H 0.079 0.921
46 H 0.050 0.950
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.602 -7.366 -3.527 8.323
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.554 5.554
2 C -0.173 4.173
3 Si 0.777 3.223
4 H -0.198 1.198
5 H -0.203 1.203
6 H -0.203 1.203
7 C -0.584 4.584
8 H 0.068 0.932
9 C 0.141 3.859
10 N -0.319 5.319
11 C 0.037 3.963
12 C -0.159 4.159
13 C -0.095 4.095
14 C -0.185 4.185
15 C -0.068 4.068
16 N -0.220 5.220
17 C -0.053 4.053
18 C 0.331 3.669
19 O -0.473 6.473
20 C -0.215 4.215
21 H 0.133 0.867
22 C -0.117 4.117
23 H 0.116 0.884
24 C -0.120 4.120
25 C -0.163 4.163
26 C -0.147 4.147
27 C -0.128 4.128
28 C -0.126 4.126
29 H 0.110 0.890
30 H 0.077 0.923
31 H 0.042 0.958
32 H 0.040 0.960
33 H 0.109 0.891
34 H 0.099 0.901
35 H 0.157 0.843
36 H 0.186 0.814
37 H 0.205 0.795
38 H 0.160 0.840
39 H 0.083 0.917
40 H 0.111 0.889
41 H 0.102 0.898
42 H 0.061 0.939
43 H 0.097 0.903
44 H 0.093 0.907
45 H 0.098 0.902
46 H 0.069 0.931
Dipole moment (debyes) X Y Z Total
from point charges -1.173 -8.542 -3.765 9.409
hybrid contribution 0.250 2.054 0.812 2.223
sum -0.923 -6.488 -2.954 7.188
Atomic orbital electron populations
1.70014 1.07036 1.28026 1.50319 1.25558 0.95506 1.01937 0.94336
0.85602 0.78865 0.79854 0.77950 1.19793 1.20293 1.20294 1.21660
0.93151 0.91590 1.51951 0.93200 1.19008 0.87273 0.82489 0.97151
1.48122 1.45149 1.34069 1.04541 1.20169 0.96187 0.93761 0.86163
1.21267 0.98820 0.96173 0.99613 1.21804 0.92628 1.00755 0.94356
1.22476 1.01321 0.93064 1.01661 1.23364 0.93294 0.97593 0.92560
1.67713 1.05720 1.36120 1.12455 1.22634 0.97931 0.88460 0.96296
1.20010 0.79793 0.81474 0.85635 1.90529 1.37112 1.31473 1.88196
1.22381 1.09251 1.00143 0.89736 0.86654 1.21920 0.95555 1.00771
0.93449 0.88392 1.20898 0.98352 0.97182 0.95590 1.21640 0.95152
0.97786 1.01717 1.21523 0.97529 0.99970 0.95630 1.21097 0.95575
0.99416 0.96674 1.22278 0.92346 0.97904 1.00096 0.89047 0.92332
0.95755 0.96004 0.89054 0.90134 0.84299 0.81411 0.79541 0.83958
0.91698 0.88906 0.89789 0.93915 0.90257 0.90667 0.90197 0.93112
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.91 -49.08 13.29 21.45 0.28 -48.80 16
2 C 0.03 1.41 5.46 84.65 0.46 1.88 16
3 Si 0.95 41.20 29.54 68.60 2.03 43.22 16
4 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16
5 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16
6 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16
7 C -0.54 -28.01 9.08 25.60 0.23 -27.77 16
8 H 0.05 2.64 7.81 -2.91 -0.02 2.62 16
9 C 0.26 12.44 4.80 85.63 0.41 12.85 16
10 N -0.59 -25.28 2.44 -830.51 -2.03 -27.31 16
11 C 0.16 6.04 5.56 85.63 0.48 6.51 16
12 C -0.16 -5.35 5.48 -19.77 -0.11 -5.46 16
13 C -0.07 -2.07 9.86 22.47 0.22 -1.85 16
14 C -0.17 -4.04 10.11 22.36 0.23 -3.82 16
15 C 0.09 2.27 11.18 84.68 0.95 3.21 16
16 N -0.51 -16.63 10.36 -195.85 -2.03 -18.66 16
17 C 0.10 3.62 10.86 84.67 0.92 4.54 16
18 C 0.54 23.34 7.46 87.66 0.65 23.99 16
19 O -0.59 -26.73 15.32 -3.03 -0.05 -26.78 16
20 C -0.19 -7.53 3.93 -11.55 -0.05 -7.58 16
21 H 0.12 5.01 6.12 -2.39 -0.01 4.99 16
22 C -0.10 -3.13 5.57 -11.64 -0.06 -3.20 16
23 H 0.10 3.31 7.55 -2.39 -0.02 3.29 16
24 C -0.08 -2.11 5.93 30.24 0.18 -1.93 16
25 C -0.13 -3.12 5.70 30.65 0.17 -2.94 16
26 C -0.11 -2.49 5.93 30.65 0.18 -2.31 16
27 C -0.09 -2.54 5.83 30.46 0.18 -2.36 16
28 C -0.11 -3.49 5.90 -10.98 -0.06 -3.55 16
29 H 0.09 3.08 8.14 -2.39 -0.02 3.06 16
30 H 0.27 13.59 8.31 -92.70 -0.77 12.82 16
31 H 0.02 1.24 6.63 -2.39 -0.02 1.22 16
32 H 0.02 1.08 8.07 -2.38 -0.02 1.06 16
33 H 0.09 3.31 8.02 -2.39 -0.02 3.29 16
34 H 0.08 3.04 7.37 -2.39 -0.02 3.02 16
35 H 0.14 4.06 8.06 -2.91 -0.02 4.04 16
36 H 0.17 2.84 8.06 -2.91 -0.02 2.81 16
37 H 0.19 3.25 8.06 -2.91 -0.02 3.22 16
38 H 0.14 5.29 7.60 -2.91 -0.02 5.27 16
39 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16
40 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16
41 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16
42 H 0.04 1.31 7.12 -2.39 -0.02 1.29 16
43 H 0.08 1.56 8.04 -2.38 -0.02 1.54 16
44 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16
45 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16
46 H 0.05 1.68 8.06 -2.39 -0.02 1.66 16
Total: -1.00 -61.56 374.66 4.15 -57.41
By element:
Atomic # 1 Polarization: 29.73 SS G_CDS: 0.96 Total: 30.69 kcal
Atomic # 6 Polarization: -14.76 SS G_CDS: 4.98 Total: -9.78 kcal
Atomic # 7 Polarization: -91.00 SS G_CDS: -3.77 Total: -94.77 kcal
Atomic # 8 Polarization: -26.73 SS G_CDS: -0.05 Total: -26.78 kcal
Atomic # 14 Polarization: 41.20 SS G_CDS: 2.03 Total: 43.22 kcal
Total: -61.56 4.15 -57.41 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000245494962.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 47.702 kcal
(2) G-P(sol) polarization free energy of solvation -61.563 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.861 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.148 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.414 kcal
(6) G-S(sol) free energy of system = (1) + (5) -9.713 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.75 seconds