Wall clock time and date at job start Tue Mar 31 2020 11:05:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86795 * 120.00429 * 2 1 4 4 H 1.48497 * 109.47406 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46779 * 299.99655 * 3 2 1 6 6 H 1.48496 * 109.47447 * 59.99193 * 3 2 1 7 7 C 1.37878 * 119.99733 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00199 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00004 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.47184 * 179.97438 * 9 7 2 11 11 C 1.46500 * 120.00121 * 89.99912 * 10 9 7 12 12 C 1.50690 * 109.47370 * 89.99928 * 11 10 9 13 13 C 1.38682 * 120.41929 * 269.72479 * 12 11 10 14 14 C 1.38625 * 118.41677 * 180.27483 * 13 12 11 15 15 C 1.38221 * 119.16809 * 0.02562 * 14 13 12 16 16 N 1.31860 * 120.76138 * 359.97438 * 15 14 13 17 17 C 1.31881 * 121.72574 * 359.97438 * 16 15 14 18 18 C 1.34778 * 119.99725 * 270.00003 * 10 9 7 19 19 O 1.21280 * 119.99805 * 179.97438 * 18 10 9 20 20 C 1.50699 * 120.00030 * 359.97438 * 18 10 9 21 21 H 1.09000 * 115.57064 * 34.15794 * 20 18 10 22 22 C 1.52305 * 117.53512 * 179.97438 * 20 18 10 23 23 H 1.08997 * 115.91893 * 0.85470 * 22 20 18 24 24 C 1.52071 * 119.83709 * 217.19702 * 22 20 18 25 25 C 1.52870 * 110.51788 * 310.45331 * 24 22 20 26 26 C 1.53306 * 108.58817 * 305.11203 * 25 24 22 27 27 C 1.52874 * 108.58414 * 74.44292 * 26 25 24 28 28 C 1.52074 * 60.63420 * 107.38029 * 22 20 18 29 29 H 1.08997 * 117.25157 * 252.85993 * 28 22 20 30 30 H 0.97006 * 119.99605 * 0.02562 * 1 2 3 31 31 H 1.08994 * 109.46904 * 59.99647 * 9 7 2 32 32 H 1.09006 * 109.46702 * 299.99566 * 9 7 2 33 33 H 1.08999 * 109.46913 * 329.99850 * 11 10 9 34 34 H 1.09002 * 109.47149 * 210.00368 * 11 10 9 35 35 H 1.07993 * 120.78870 * 0.26805 * 13 12 11 36 36 H 1.08004 * 120.41613 * 179.97438 * 14 13 12 37 37 H 1.07993 * 119.62352 * 180.02562 * 15 14 13 38 38 H 1.08003 * 119.62232 * 180.02562 * 17 16 15 39 39 H 1.09002 * 109.27167 * 70.72142 * 24 22 20 40 40 H 1.09004 * 109.26866 * 190.18263 * 24 22 20 41 41 H 1.08993 * 109.61904 * 185.38497 * 25 24 22 42 42 H 1.08997 * 109.76580 * 64.92854 * 25 24 22 43 43 H 1.09007 * 109.61827 * 314.70948 * 26 25 24 44 44 H 1.09004 * 109.76619 * 194.26014 * 26 25 24 45 45 H 1.08997 * 109.35853 * 185.27085 * 27 26 25 46 46 H 1.08995 * 109.36223 * 65.68412 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2123 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2028 -3.6128 0.0005 11 6 2.6788 -4.1696 1.2692 12 6 1.7622 -5.2836 1.7043 13 6 0.6653 -5.0163 2.5097 14 6 -0.1471 -6.0733 2.8901 15 6 0.1612 -7.3494 2.4576 16 7 1.2127 -7.5665 1.6922 17 6 2.0068 -6.5853 1.3102 18 6 2.6407 -4.1250 -1.1667 19 8 3.4291 -5.0465 -1.1667 20 6 2.1506 -3.5526 -2.4718 21 1 1.9591 -2.4795 -2.4725 22 6 2.6823 -4.1735 -3.7568 23 1 3.3754 -5.0055 -3.6327 24 6 2.9756 -3.2899 -4.9592 25 6 1.7872 -2.3746 -5.2541 26 6 0.5335 -3.2406 -5.4230 27 6 0.0893 -3.7289 -4.0441 28 6 1.2439 -4.4384 -3.3401 29 1 1.0091 -5.4331 -2.9615 30 1 -0.4850 0.8401 -0.0004 31 1 0.6246 -2.5570 -0.8896 32 1 0.6239 -2.5567 0.8904 33 1 2.6867 -3.3879 2.0289 34 1 3.6883 -4.5596 1.1389 35 1 0.4492 -4.0088 2.8330 36 1 -1.0095 -5.9019 3.5172 37 1 -0.4669 -8.1781 2.7491 38 1 2.8588 -6.8016 0.6826 39 1 3.8557 -2.6811 -4.7521 40 1 3.1701 -3.9182 -5.8285 41 1 1.9734 -1.8174 -6.1721 42 1 1.6432 -1.6795 -4.4270 43 1 0.7626 -4.0964 -6.0581 44 1 -0.2633 -2.6511 -5.8767 45 1 -0.7448 -4.4213 -4.1574 46 1 -0.2302 -2.8766 -3.4446 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000245494962.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:16 Heat of formation + Delta-G solvation = -9.712629 kcal Electronic energy + Delta-G solvation = -26794.524530 eV Core-core repulsion = 23262.213779 eV Total energy + Delta-G solvation = -3532.310751 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.63936 -40.96138 -39.40018 -36.91384 -34.87073 -34.02267 -33.45234 -32.58993 -31.66967 -29.36520 -28.02938 -25.96627 -24.95232 -24.36091 -23.59466 -23.38615 -22.31106 -20.12755 -19.08758 -18.67597 -18.29970 -17.91640 -17.22619 -17.14420 -16.54748 -16.47511 -15.99615 -15.42199 -15.18586 -14.85791 -14.82576 -14.58155 -14.40679 -14.27190 -14.03244 -13.97383 -13.52011 -13.24235 -13.15604 -13.11424 -12.87986 -12.68036 -12.60917 -12.50478 -12.12319 -11.96875 -11.72887 -11.71256 -11.18155 -10.99642 -10.78950 -10.68654 -10.58600 -10.52892 -10.44754 -9.97629 -9.50814 -8.21193 -6.35391 0.10244 0.30450 1.38316 1.42298 1.51629 1.59150 2.24622 2.41679 2.86625 2.92000 3.09229 3.49656 3.57241 3.78707 3.83019 3.85099 3.88835 4.04075 4.05212 4.08225 4.14263 4.23940 4.39936 4.43352 4.50228 4.64702 4.66444 4.69690 4.72263 4.83243 4.84483 4.86222 5.03810 5.04818 5.13568 5.14837 5.21722 5.24960 5.34246 5.34406 5.35819 5.45020 5.56305 5.64943 5.75736 5.80559 6.05034 6.51989 6.79520 6.98111 7.28284 7.39662 8.84357 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.008657 B = 0.005958 C = 0.004107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3233.540907 B = 4698.197318 C = 6816.760339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.027 3.973 3 Si 0.952 3.048 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.545 4.545 8 H 0.050 0.950 9 C 0.261 3.739 10 N -0.590 5.590 11 C 0.161 3.839 12 C -0.156 4.156 13 C -0.069 4.069 14 C -0.166 4.166 15 C 0.089 3.911 16 N -0.511 5.511 17 C 0.103 3.897 18 C 0.541 3.459 19 O -0.590 6.590 20 C -0.194 4.194 21 H 0.116 0.884 22 C -0.098 4.098 23 H 0.098 0.902 24 C -0.083 4.083 25 C -0.126 4.126 26 C -0.109 4.109 27 C -0.090 4.090 28 C -0.107 4.107 29 H 0.091 0.909 30 H 0.268 0.732 31 H 0.024 0.976 32 H 0.022 0.978 33 H 0.091 0.909 34 H 0.080 0.920 35 H 0.139 0.861 36 H 0.168 0.832 37 H 0.188 0.812 38 H 0.143 0.857 39 H 0.064 0.936 40 H 0.093 0.907 41 H 0.084 0.916 42 H 0.042 0.958 43 H 0.079 0.921 44 H 0.075 0.925 45 H 0.079 0.921 46 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.602 -7.366 -3.527 8.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.173 4.173 3 Si 0.777 3.223 4 H -0.198 1.198 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.584 4.584 8 H 0.068 0.932 9 C 0.141 3.859 10 N -0.319 5.319 11 C 0.037 3.963 12 C -0.159 4.159 13 C -0.095 4.095 14 C -0.185 4.185 15 C -0.068 4.068 16 N -0.220 5.220 17 C -0.053 4.053 18 C 0.331 3.669 19 O -0.473 6.473 20 C -0.215 4.215 21 H 0.133 0.867 22 C -0.117 4.117 23 H 0.116 0.884 24 C -0.120 4.120 25 C -0.163 4.163 26 C -0.147 4.147 27 C -0.128 4.128 28 C -0.126 4.126 29 H 0.110 0.890 30 H 0.077 0.923 31 H 0.042 0.958 32 H 0.040 0.960 33 H 0.109 0.891 34 H 0.099 0.901 35 H 0.157 0.843 36 H 0.186 0.814 37 H 0.205 0.795 38 H 0.160 0.840 39 H 0.083 0.917 40 H 0.111 0.889 41 H 0.102 0.898 42 H 0.061 0.939 43 H 0.097 0.903 44 H 0.093 0.907 45 H 0.098 0.902 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.173 -8.542 -3.765 9.409 hybrid contribution 0.250 2.054 0.812 2.223 sum -0.923 -6.488 -2.954 7.188 Atomic orbital electron populations 1.70014 1.07036 1.28026 1.50319 1.25558 0.95506 1.01937 0.94336 0.85602 0.78865 0.79854 0.77950 1.19793 1.20293 1.20294 1.21660 0.93151 0.91590 1.51951 0.93200 1.19008 0.87273 0.82489 0.97151 1.48122 1.45149 1.34069 1.04541 1.20169 0.96187 0.93761 0.86163 1.21267 0.98820 0.96173 0.99613 1.21804 0.92628 1.00755 0.94356 1.22476 1.01321 0.93064 1.01661 1.23364 0.93294 0.97593 0.92560 1.67713 1.05720 1.36120 1.12455 1.22634 0.97931 0.88460 0.96296 1.20010 0.79793 0.81474 0.85635 1.90529 1.37112 1.31473 1.88196 1.22381 1.09251 1.00143 0.89736 0.86654 1.21920 0.95555 1.00771 0.93449 0.88392 1.20898 0.98352 0.97182 0.95590 1.21640 0.95152 0.97786 1.01717 1.21523 0.97529 0.99970 0.95630 1.21097 0.95575 0.99416 0.96674 1.22278 0.92346 0.97904 1.00096 0.89047 0.92332 0.95755 0.96004 0.89054 0.90134 0.84299 0.81411 0.79541 0.83958 0.91698 0.88906 0.89789 0.93915 0.90257 0.90667 0.90197 0.93112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.08 13.29 21.45 0.28 -48.80 16 2 C 0.03 1.41 5.46 84.65 0.46 1.88 16 3 Si 0.95 41.20 29.54 68.60 2.03 43.22 16 4 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 5 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 6 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 7 C -0.54 -28.01 9.08 25.60 0.23 -27.77 16 8 H 0.05 2.64 7.81 -2.91 -0.02 2.62 16 9 C 0.26 12.44 4.80 85.63 0.41 12.85 16 10 N -0.59 -25.28 2.44 -830.51 -2.03 -27.31 16 11 C 0.16 6.04 5.56 85.63 0.48 6.51 16 12 C -0.16 -5.35 5.48 -19.77 -0.11 -5.46 16 13 C -0.07 -2.07 9.86 22.47 0.22 -1.85 16 14 C -0.17 -4.04 10.11 22.36 0.23 -3.82 16 15 C 0.09 2.27 11.18 84.68 0.95 3.21 16 16 N -0.51 -16.63 10.36 -195.85 -2.03 -18.66 16 17 C 0.10 3.62 10.86 84.67 0.92 4.54 16 18 C 0.54 23.34 7.46 87.66 0.65 23.99 16 19 O -0.59 -26.73 15.32 -3.03 -0.05 -26.78 16 20 C -0.19 -7.53 3.93 -11.55 -0.05 -7.58 16 21 H 0.12 5.01 6.12 -2.39 -0.01 4.99 16 22 C -0.10 -3.13 5.57 -11.64 -0.06 -3.20 16 23 H 0.10 3.31 7.55 -2.39 -0.02 3.29 16 24 C -0.08 -2.11 5.93 30.24 0.18 -1.93 16 25 C -0.13 -3.12 5.70 30.65 0.17 -2.94 16 26 C -0.11 -2.49 5.93 30.65 0.18 -2.31 16 27 C -0.09 -2.54 5.83 30.46 0.18 -2.36 16 28 C -0.11 -3.49 5.90 -10.98 -0.06 -3.55 16 29 H 0.09 3.08 8.14 -2.39 -0.02 3.06 16 30 H 0.27 13.59 8.31 -92.70 -0.77 12.82 16 31 H 0.02 1.24 6.63 -2.39 -0.02 1.22 16 32 H 0.02 1.08 8.07 -2.38 -0.02 1.06 16 33 H 0.09 3.31 8.02 -2.39 -0.02 3.29 16 34 H 0.08 3.04 7.37 -2.39 -0.02 3.02 16 35 H 0.14 4.06 8.06 -2.91 -0.02 4.04 16 36 H 0.17 2.84 8.06 -2.91 -0.02 2.81 16 37 H 0.19 3.25 8.06 -2.91 -0.02 3.22 16 38 H 0.14 5.29 7.60 -2.91 -0.02 5.27 16 39 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 41 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 42 H 0.04 1.31 7.12 -2.39 -0.02 1.29 16 43 H 0.08 1.56 8.04 -2.38 -0.02 1.54 16 44 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 45 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 46 H 0.05 1.68 8.06 -2.39 -0.02 1.66 16 Total: -1.00 -61.56 374.66 4.15 -57.41 By element: Atomic # 1 Polarization: 29.73 SS G_CDS: 0.96 Total: 30.69 kcal Atomic # 6 Polarization: -14.76 SS G_CDS: 4.98 Total: -9.78 kcal Atomic # 7 Polarization: -91.00 SS G_CDS: -3.77 Total: -94.77 kcal Atomic # 8 Polarization: -26.73 SS G_CDS: -0.05 Total: -26.78 kcal Atomic # 14 Polarization: 41.20 SS G_CDS: 2.03 Total: 43.22 kcal Total: -61.56 4.15 -57.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000245494962.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.702 kcal (2) G-P(sol) polarization free energy of solvation -61.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds