Wall clock time and date at job start Tue Mar 31 2020 11:56:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47142 * 232.30839 * 3 2 1 5 5 C 1.36937 * 119.99887 * 270.00008 * 4 3 2 6 6 H 1.07996 * 120.00341 * 189.06961 * 5 4 3 7 7 C 1.38809 * 120.00074 * 9.06859 * 5 4 3 8 8 N 1.31615 * 120.00198 * 25.26053 * 7 5 4 9 9 Si 1.86801 * 120.00144 * 205.26419 * 7 5 4 10 10 H 1.48494 * 109.47455 * 89.99749 * 9 7 5 11 11 H 1.48503 * 109.47215 * 210.00044 * 9 7 5 12 12 H 1.48508 * 109.47040 * 330.00003 * 9 7 5 13 13 C 1.46496 * 120.00165 * 89.99850 * 4 3 2 14 14 C 1.50710 * 109.46866 * 91.19724 * 13 4 3 15 15 O 1.21278 * 119.99883 * 359.97438 * 14 13 4 16 16 N 1.34773 * 119.99788 * 180.02562 * 14 13 4 17 17 C 1.46495 * 120.00011 * 179.97438 * 16 14 13 18 18 H 1.09006 * 109.47411 * 325.00005 * 17 16 14 19 19 C 1.53004 * 109.47310 * 85.00023 * 17 16 14 20 20 C 1.50704 * 109.47695 * 204.99931 * 17 16 14 21 21 C 1.38257 * 119.99584 * 320.02455 * 20 17 16 22 22 C 1.38208 * 119.99922 * 179.97438 * 21 20 17 23 23 C 1.38262 * 119.99795 * 359.69978 * 22 21 20 24 24 C 1.50705 * 119.99812 * 180.29705 * 23 22 21 25 25 C 1.38214 * 119.99963 * 0.55233 * 23 22 21 26 26 C 1.50700 * 119.99873 * 179.74213 * 25 23 22 27 27 C 1.38205 * 120.00326 * 139.99581 * 20 17 16 28 28 H 4.40640 * 5.51507 * 179.97438 * 4 1 2 29 29 H 1.09000 * 109.46930 * 112.30606 * 3 2 1 30 30 H 1.08995 * 109.46892 * 352.31025 * 3 2 1 31 31 H 0.97002 * 120.00103 * 179.97438 * 8 7 5 32 32 H 1.08998 * 109.47301 * 331.20136 * 13 4 3 33 33 H 1.08996 * 109.47441 * 211.19720 * 13 4 3 34 34 H 0.97004 * 120.00102 * 359.97438 * 16 14 13 35 35 H 1.08996 * 109.46939 * 59.99810 * 19 17 16 36 36 H 1.08998 * 109.47436 * 180.02562 * 19 17 16 37 37 H 1.09002 * 109.46736 * 300.00417 * 19 17 16 38 38 H 1.07998 * 120.00041 * 359.97341 * 21 20 17 39 39 H 1.07999 * 120.00461 * 179.97438 * 22 21 20 40 40 H 1.09000 * 109.47099 * 270.25218 * 24 23 22 41 41 H 1.09000 * 109.46933 * 30.25671 * 24 23 22 42 42 H 1.09003 * 109.46625 * 150.25388 * 24 23 22 43 43 H 1.08997 * 109.46956 * 269.72654 * 26 25 23 44 44 H 1.08999 * 109.46848 * 149.72779 * 26 25 23 45 45 H 1.08999 * 109.46922 * 29.72833 * 26 25 23 46 46 H 1.08004 * 120.00175 * 0.02562 * 27 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1339 0.8453 1.0930 5 6 3.3616 2.1786 0.8787 6 1 3.8569 2.7701 1.6343 7 6 2.9556 2.7697 -0.3099 8 7 1.9605 2.2503 -0.9970 9 14 3.8218 4.3025 -0.9342 10 1 4.9570 3.9090 -1.8067 11 1 2.8644 5.1305 -1.7108 12 1 4.3325 5.0868 0.2189 13 6 3.3783 0.2638 2.4151 14 6 4.8102 -0.1980 2.5039 15 8 5.5531 -0.0557 1.5559 16 7 5.2648 -0.7699 3.6364 17 6 6.6564 -1.2193 3.7225 18 1 6.9770 -1.5972 2.7517 19 6 7.5473 -0.0448 4.1321 20 6 6.7676 -2.3161 4.7501 21 6 6.0537 -2.2318 5.9311 22 6 6.1552 -3.2379 6.8732 23 6 6.9658 -4.3317 6.6320 24 6 7.0713 -5.4319 7.6564 25 6 7.6835 -4.4134 5.4536 26 6 8.5716 -5.6028 5.1932 27 6 7.5827 -3.4065 4.5116 28 1 -1.0502 0.0000 -0.0003 29 1 3.0091 0.3909 -0.9508 30 1 3.0097 -1.0176 0.1375 31 1 1.6766 2.6636 -1.8274 32 1 2.7126 -0.5857 2.5671 33 1 3.1905 1.0145 3.1827 34 1 4.6705 -0.8840 4.3945 35 1 7.2268 0.3331 5.1029 36 1 8.5828 -0.3790 4.1957 37 1 7.4669 0.7485 3.3889 38 1 5.4167 -1.3798 6.1174 39 1 5.5979 -3.1719 7.7960 40 1 7.8831 -5.2075 8.3483 41 1 6.1339 -5.5061 8.2077 42 1 7.2731 -6.3780 7.1540 43 1 9.5732 -5.3979 5.5711 44 1 8.6195 -5.7926 4.1210 45 1 8.1643 -6.4780 5.6993 46 1 8.1403 -3.4724 3.5890 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281224681.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:56:11 Heat of formation + Delta-G solvation = 67.885733 kcal Electronic energy + Delta-G solvation = -25450.492036 eV Core-core repulsion = 21921.546202 eV Total energy + Delta-G solvation = -3528.945833 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.16512 -38.85575 -36.17283 -35.26015 -32.82456 -32.38248 -31.45499 -31.34099 -30.15745 -27.71565 -27.03879 -26.43233 -25.87098 -23.15641 -22.35769 -21.79958 -20.01751 -19.53955 -17.51119 -17.08117 -16.33907 -16.16020 -15.58516 -15.34529 -14.84691 -14.66160 -14.61478 -14.34856 -13.62523 -13.56106 -13.41394 -13.32364 -13.07675 -13.06584 -12.77782 -12.65307 -12.46310 -12.23740 -12.02266 -11.71904 -11.52890 -11.39938 -11.27035 -11.05123 -10.90972 -10.78149 -10.64608 -10.20700 -9.90645 -9.30384 -8.92430 -8.89637 -8.75333 -8.67486 -8.53994 -8.30299 -7.06205 -5.75469 -3.09494 1.14609 1.22864 3.40950 3.43546 3.48595 3.52324 3.53811 3.71240 4.23496 4.45065 4.49846 4.57839 4.61056 4.68377 4.81031 4.94035 5.11693 5.22910 5.24719 5.34475 5.38193 5.42889 5.43198 5.52964 5.57383 5.60302 5.61379 5.68838 5.81698 5.89214 5.92461 5.99327 6.07778 6.10999 6.24098 6.26535 6.33198 6.44590 6.47932 6.72751 6.85586 6.92881 7.35874 7.46116 7.77731 8.00701 8.26361 8.97766 9.12939 9.25072 9.79020 10.20371 11.28043 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.020471 B = 0.002822 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.427645 B = 9918.754869 C =10579.157212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.304 4.304 2 C -0.090 4.090 3 C 0.270 3.730 4 N -0.564 5.564 5 C -0.256 4.256 6 H 0.075 0.925 7 C 0.005 3.995 8 N -0.887 5.887 9 Si 0.898 3.102 10 H -0.287 1.287 11 H -0.294 1.294 12 H -0.281 1.281 13 C 0.134 3.866 14 C 0.479 3.521 15 O -0.519 6.519 16 N -0.740 5.740 17 C 0.182 3.818 18 H 0.091 0.909 19 C -0.155 4.155 20 C -0.083 4.083 21 C -0.115 4.115 22 C -0.114 4.114 23 C -0.093 4.093 24 C -0.116 4.116 25 C -0.085 4.085 26 C -0.117 4.117 27 C -0.107 4.107 28 H 0.190 0.810 29 H 0.099 0.901 30 H 0.036 0.964 31 H 0.254 0.746 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.393 0.607 35 H 0.055 0.945 36 H 0.059 0.941 37 H 0.067 0.933 38 H 0.122 0.878 39 H 0.121 0.879 40 H 0.068 0.932 41 H 0.064 0.936 42 H 0.069 0.931 43 H 0.069 0.931 44 H 0.066 0.934 45 H 0.069 0.931 46 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.818 -14.994 16.887 24.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.323 4.323 2 C -0.093 4.093 3 C 0.145 3.855 4 N -0.282 5.282 5 C -0.384 4.384 6 H 0.093 0.907 7 C -0.193 4.193 8 N -0.530 5.530 9 Si 0.728 3.272 10 H -0.214 1.214 11 H -0.221 1.221 12 H -0.206 1.206 13 C 0.002 3.998 14 C 0.264 3.736 15 O -0.392 6.392 16 N -0.397 5.397 17 C 0.077 3.923 18 H 0.109 0.891 19 C -0.214 4.214 20 C -0.084 4.084 21 C -0.133 4.133 22 C -0.132 4.132 23 C -0.093 4.093 24 C -0.173 4.173 25 C -0.085 4.085 26 C -0.174 4.174 27 C -0.125 4.125 28 H 0.207 0.793 29 H 0.117 0.883 30 H 0.054 0.946 31 H 0.065 0.935 32 H 0.088 0.912 33 H 0.096 0.904 34 H 0.227 0.773 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.086 0.914 38 H 0.140 0.860 39 H 0.139 0.861 40 H 0.087 0.913 41 H 0.083 0.917 42 H 0.088 0.912 43 H 0.088 0.912 44 H 0.085 0.915 45 H 0.088 0.912 46 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 10.288 -14.762 15.961 24.052 hybrid contribution -0.101 0.995 0.020 1.000 sum 10.187 -13.767 15.981 23.424 Atomic orbital electron populations 1.24145 0.95268 1.07714 1.05177 1.24217 0.95156 0.93917 0.95978 1.17812 0.82664 0.91179 0.93834 1.43640 1.73686 1.06207 1.04643 1.19116 1.32584 0.84527 1.02218 0.90697 1.24748 0.97138 0.98586 0.98871 1.70173 1.23922 1.41923 1.17018 0.86353 0.79487 0.82409 0.78945 1.21398 1.22068 1.20640 1.20663 0.90218 0.98395 0.90559 1.23235 0.92907 0.76151 0.81334 1.90640 1.58317 1.53234 1.36993 1.46527 1.11216 1.64390 1.17544 1.19662 0.83598 0.91742 0.97329 0.89110 1.22143 0.98907 0.98473 1.01867 1.20010 0.97308 0.95581 0.95474 1.20909 0.99808 0.99053 0.93553 1.20973 0.99128 0.93825 0.99241 1.19747 0.97625 0.96483 0.95456 1.20846 1.02325 0.96746 0.97352 1.19717 0.98242 0.96555 0.94034 1.20858 0.98536 0.95563 1.02418 1.20885 0.99173 0.93198 0.99268 0.79285 0.88317 0.94560 0.93511 0.91186 0.90368 0.77320 0.92603 0.92189 0.91355 0.86007 0.86077 0.91319 0.91689 0.91243 0.91214 0.91531 0.91213 0.85910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -7.02 19.25 29.55 0.57 -6.45 16 2 C -0.09 -2.23 11.45 -37.12 -0.43 -2.66 16 3 C 0.27 6.73 5.46 -6.83 -0.04 6.69 16 4 N -0.56 -14.12 1.98 -177.95 -0.35 -14.47 16 5 C -0.26 -7.08 9.69 -15.06 -0.15 -7.23 16 6 H 0.08 2.05 7.95 -52.49 -0.42 1.64 16 7 C 0.01 0.14 4.88 -17.43 -0.09 0.06 16 8 N -0.89 -25.66 9.18 55.49 0.51 -25.15 16 9 Si 0.90 22.43 29.62 -169.99 -5.04 17.40 16 10 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 11 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 12 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 13 C 0.13 2.64 6.15 -5.19 -0.03 2.61 16 14 C 0.48 9.10 7.86 -10.98 -0.09 9.02 16 15 O -0.52 -12.16 16.09 5.56 0.09 -12.07 16 16 N -0.74 -10.55 5.03 -54.93 -0.28 -10.83 16 17 C 0.18 2.42 2.78 -69.08 -0.19 2.23 16 18 H 0.09 1.38 7.44 -51.93 -0.39 1.00 16 19 C -0.16 -1.99 9.46 37.16 0.35 -1.63 16 20 C -0.08 -0.95 4.95 -104.63 -0.52 -1.47 16 21 C -0.11 -1.17 9.06 -39.59 -0.36 -1.53 16 22 C -0.11 -1.05 9.70 -39.58 -0.38 -1.44 16 23 C -0.09 -0.85 5.88 -104.62 -0.62 -1.47 16 24 C -0.12 -0.76 9.60 36.01 0.35 -0.41 16 25 C -0.09 -0.82 5.88 -104.63 -0.62 -1.44 16 26 C -0.12 -0.83 9.61 36.01 0.35 -0.49 16 27 C -0.11 -1.15 9.32 -39.59 -0.37 -1.52 16 28 H 0.19 3.65 7.80 -54.08 -0.42 3.23 16 29 H 0.10 2.73 6.35 -51.93 -0.33 2.40 16 30 H 0.04 0.82 8.07 -51.93 -0.42 0.40 16 31 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 32 H 0.07 1.23 8.06 -51.93 -0.42 0.81 16 33 H 0.08 1.44 8.05 -51.93 -0.42 1.02 16 34 H 0.39 4.51 6.87 -40.82 -0.28 4.23 16 35 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.12 1.07 6.92 -52.49 -0.36 0.71 16 39 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 40 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 41 H 0.06 0.37 8.09 -51.93 -0.42 -0.05 16 42 H 0.07 0.40 5.94 -51.93 -0.31 0.09 16 43 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.07 0.45 8.09 -51.93 -0.42 0.03 16 45 H 0.07 0.42 5.94 -51.93 -0.31 0.11 16 46 H 0.12 1.21 8.04 -52.48 -0.42 0.79 16 LS Contribution 384.89 15.07 5.80 5.80 Total: -1.00 -33.40 384.89 -8.52 -41.92 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -7.00 Total: 4.53 kcal Atomic # 6 Polarization: -4.87 SS G_CDS: -2.25 Total: -7.12 kcal Atomic # 7 Polarization: -50.34 SS G_CDS: -0.12 Total: -50.46 kcal Atomic # 8 Polarization: -12.16 SS G_CDS: 0.09 Total: -12.07 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.04 Total: 17.40 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.40 -8.52 -41.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281224681.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.801 kcal (2) G-P(sol) polarization free energy of solvation -33.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds