Wall clock time and date at job start Tue Mar 31 2020 11:56:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47142 * 232.30839 * 3 2 1 5 5 C 1.36937 * 119.99887 * 270.00008 * 4 3 2 6 6 H 1.07996 * 120.00341 * 189.06961 * 5 4 3 7 7 C 1.38809 * 120.00074 * 9.06859 * 5 4 3 8 8 N 1.31615 * 120.00198 * 25.26053 * 7 5 4 9 9 Si 1.86801 * 120.00144 * 205.26419 * 7 5 4 10 10 H 1.48494 * 109.47455 * 89.99749 * 9 7 5 11 11 H 1.48503 * 109.47215 * 210.00044 * 9 7 5 12 12 H 1.48508 * 109.47040 * 330.00003 * 9 7 5 13 13 C 1.46496 * 120.00165 * 89.99850 * 4 3 2 14 14 C 1.50710 * 109.46866 * 91.19724 * 13 4 3 15 15 O 1.21278 * 119.99883 * 359.97438 * 14 13 4 16 16 N 1.34773 * 119.99788 * 180.02562 * 14 13 4 17 17 C 1.46495 * 120.00011 * 179.97438 * 16 14 13 18 18 H 1.09006 * 109.47411 * 325.00005 * 17 16 14 19 19 C 1.53004 * 109.47310 * 85.00023 * 17 16 14 20 20 C 1.50704 * 109.47695 * 204.99931 * 17 16 14 21 21 C 1.38257 * 119.99584 * 320.02455 * 20 17 16 22 22 C 1.38208 * 119.99922 * 179.97438 * 21 20 17 23 23 C 1.38262 * 119.99795 * 359.69978 * 22 21 20 24 24 C 1.50705 * 119.99812 * 180.29705 * 23 22 21 25 25 C 1.38214 * 119.99963 * 0.55233 * 23 22 21 26 26 C 1.50700 * 119.99873 * 179.74213 * 25 23 22 27 27 C 1.38205 * 120.00326 * 139.99581 * 20 17 16 28 28 H 4.40640 * 5.51507 * 179.97438 * 4 1 2 29 29 H 1.09000 * 109.46930 * 112.30606 * 3 2 1 30 30 H 1.08995 * 109.46892 * 352.31025 * 3 2 1 31 31 H 0.97002 * 120.00103 * 179.97438 * 8 7 5 32 32 H 1.08998 * 109.47301 * 331.20136 * 13 4 3 33 33 H 1.08996 * 109.47441 * 211.19720 * 13 4 3 34 34 H 0.97004 * 120.00102 * 359.97438 * 16 14 13 35 35 H 1.08996 * 109.46939 * 59.99810 * 19 17 16 36 36 H 1.08998 * 109.47436 * 180.02562 * 19 17 16 37 37 H 1.09002 * 109.46736 * 300.00417 * 19 17 16 38 38 H 1.07998 * 120.00041 * 359.97341 * 21 20 17 39 39 H 1.07999 * 120.00461 * 179.97438 * 22 21 20 40 40 H 1.09000 * 109.47099 * 270.25218 * 24 23 22 41 41 H 1.09000 * 109.46933 * 30.25671 * 24 23 22 42 42 H 1.09003 * 109.46625 * 150.25388 * 24 23 22 43 43 H 1.08997 * 109.46956 * 269.72654 * 26 25 23 44 44 H 1.08999 * 109.46848 * 149.72779 * 26 25 23 45 45 H 1.08999 * 109.46922 * 29.72833 * 26 25 23 46 46 H 1.08004 * 120.00175 * 0.02562 * 27 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1339 0.8453 1.0930 5 6 3.3616 2.1786 0.8787 6 1 3.8569 2.7701 1.6343 7 6 2.9556 2.7697 -0.3099 8 7 1.9605 2.2503 -0.9970 9 14 3.8218 4.3025 -0.9342 10 1 4.9570 3.9090 -1.8067 11 1 2.8644 5.1305 -1.7108 12 1 4.3325 5.0868 0.2189 13 6 3.3783 0.2638 2.4151 14 6 4.8102 -0.1980 2.5039 15 8 5.5531 -0.0557 1.5559 16 7 5.2648 -0.7699 3.6364 17 6 6.6564 -1.2193 3.7225 18 1 6.9770 -1.5972 2.7517 19 6 7.5473 -0.0448 4.1321 20 6 6.7676 -2.3161 4.7501 21 6 6.0537 -2.2318 5.9311 22 6 6.1552 -3.2379 6.8732 23 6 6.9658 -4.3317 6.6320 24 6 7.0713 -5.4319 7.6564 25 6 7.6835 -4.4134 5.4536 26 6 8.5716 -5.6028 5.1932 27 6 7.5827 -3.4065 4.5116 28 1 -1.0502 0.0000 -0.0003 29 1 3.0091 0.3909 -0.9508 30 1 3.0097 -1.0176 0.1375 31 1 1.6766 2.6636 -1.8274 32 1 2.7126 -0.5857 2.5671 33 1 3.1905 1.0145 3.1827 34 1 4.6705 -0.8840 4.3945 35 1 7.2268 0.3331 5.1029 36 1 8.5828 -0.3790 4.1957 37 1 7.4669 0.7485 3.3889 38 1 5.4167 -1.3798 6.1174 39 1 5.5979 -3.1719 7.7960 40 1 7.8831 -5.2075 8.3483 41 1 6.1339 -5.5061 8.2077 42 1 7.2731 -6.3780 7.1540 43 1 9.5732 -5.3979 5.5711 44 1 8.6195 -5.7926 4.1210 45 1 8.1643 -6.4780 5.6993 46 1 8.1403 -3.4724 3.5890 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281224681.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:56:10 Heat of formation + Delta-G solvation = 49.769382 kcal Electronic energy + Delta-G solvation = -25451.277619 eV Core-core repulsion = 21921.546202 eV Total energy + Delta-G solvation = -3529.731417 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.13552 -40.14893 -37.76983 -36.68165 -33.81907 -33.45254 -33.23665 -32.99674 -31.32502 -28.74222 -28.34800 -27.87927 -27.15508 -24.49178 -23.32205 -23.09161 -21.32277 -20.58868 -19.44200 -18.49775 -17.86409 -17.50791 -16.87881 -16.48305 -16.14287 -16.05538 -15.61982 -15.37840 -15.18456 -15.05852 -14.90395 -14.44117 -14.18541 -14.03749 -13.76989 -13.56046 -13.39598 -13.36817 -13.24434 -13.13584 -12.80363 -12.68447 -12.53985 -12.46461 -12.33796 -12.22728 -11.93914 -11.74845 -11.66675 -11.06647 -10.78428 -10.59814 -10.25744 -10.01708 -9.64280 -9.34393 -9.02953 -7.85925 -5.19781 0.37603 0.48409 1.43060 1.49288 1.54397 1.90755 2.17346 2.46319 2.54352 2.62196 2.82578 3.27731 3.60401 3.77552 3.89564 4.02744 4.07746 4.13669 4.20655 4.26306 4.35679 4.38978 4.48984 4.56823 4.66158 4.67379 4.74650 4.78182 4.87820 4.89068 4.89948 4.94078 5.03153 5.07133 5.20259 5.25909 5.33587 5.40405 5.51229 5.55873 5.59476 5.68711 5.75830 5.78604 6.13799 6.19995 6.73088 7.06394 7.38549 7.51713 7.79859 8.17293 9.15549 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.020471 B = 0.002822 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.427645 B = 9918.754869 C =10579.157212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.285 4.285 2 C -0.131 4.131 3 C 0.276 3.724 4 N -0.581 5.581 5 C -0.259 4.259 6 H 0.071 0.929 7 C -0.044 4.044 8 N -0.908 5.908 9 Si 0.952 3.048 10 H -0.296 1.296 11 H -0.294 1.294 12 H -0.272 1.272 13 C 0.131 3.869 14 C 0.485 3.515 15 O -0.570 6.570 16 N -0.718 5.718 17 C 0.186 3.814 18 H 0.066 0.934 19 C -0.149 4.149 20 C -0.096 4.096 21 C -0.121 4.121 22 C -0.118 4.118 23 C -0.097 4.097 24 C -0.116 4.116 25 C -0.094 4.094 26 C -0.117 4.117 27 C -0.122 4.122 28 H 0.225 0.775 29 H 0.063 0.937 30 H 0.052 0.948 31 H 0.247 0.753 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.409 0.591 35 H 0.070 0.930 36 H 0.074 0.926 37 H 0.037 0.963 38 H 0.134 0.866 39 H 0.143 0.857 40 H 0.078 0.922 41 H 0.074 0.926 42 H 0.077 0.923 43 H 0.079 0.921 44 H 0.065 0.935 45 H 0.083 0.917 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.677 -16.259 19.597 27.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.304 4.304 2 C -0.134 4.134 3 C 0.151 3.849 4 N -0.300 5.300 5 C -0.388 4.388 6 H 0.089 0.911 7 C -0.240 4.240 8 N -0.553 5.553 9 Si 0.781 3.219 10 H -0.224 1.224 11 H -0.221 1.221 12 H -0.197 1.197 13 C 0.000 4.000 14 C 0.271 3.729 15 O -0.447 6.447 16 N -0.374 5.374 17 C 0.081 3.919 18 H 0.084 0.916 19 C -0.207 4.207 20 C -0.097 4.097 21 C -0.139 4.139 22 C -0.136 4.136 23 C -0.097 4.097 24 C -0.172 4.172 25 C -0.094 4.094 26 C -0.173 4.173 27 C -0.141 4.141 28 H 0.242 0.758 29 H 0.081 0.919 30 H 0.070 0.930 31 H 0.057 0.943 32 H 0.113 0.887 33 H 0.112 0.888 34 H 0.247 0.753 35 H 0.089 0.911 36 H 0.093 0.907 37 H 0.056 0.944 38 H 0.152 0.848 39 H 0.161 0.839 40 H 0.097 0.903 41 H 0.093 0.907 42 H 0.096 0.904 43 H 0.097 0.903 44 H 0.084 0.916 45 H 0.102 0.898 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 10.154 -16.058 18.757 26.698 hybrid contribution -0.029 1.263 -0.690 1.439 sum 10.125 -14.795 18.068 25.453 Atomic orbital electron populations 1.24978 0.96210 1.05918 1.03301 1.24389 0.95718 0.95574 0.97716 1.17558 0.83255 0.91582 0.92491 1.43744 1.74241 1.05541 1.06451 1.19319 1.31514 0.85817 1.02196 0.91065 1.25351 0.97959 1.01278 0.99396 1.70304 1.24969 1.43035 1.16954 0.85498 0.78072 0.79964 0.78325 1.22372 1.22095 1.19738 1.20893 0.90911 0.99534 0.88627 1.22837 0.92276 0.76071 0.81757 1.90629 1.59354 1.55692 1.39051 1.46217 1.12141 1.62449 1.16610 1.19616 0.82519 0.92717 0.97082 0.91583 1.22068 0.99847 0.97287 1.01494 1.19802 0.98955 0.95323 0.95598 1.21070 0.99750 0.99878 0.93210 1.21279 0.99106 0.93423 0.99773 1.20145 0.96750 0.97089 0.95709 1.20906 1.03276 0.96090 0.96923 1.20016 0.98580 0.96866 0.93962 1.20905 0.98625 0.95085 1.02690 1.21017 0.99532 0.93670 0.99849 0.75795 0.91936 0.93018 0.94296 0.88696 0.88846 0.75323 0.91115 0.90722 0.94351 0.84818 0.83899 0.90305 0.90706 0.90393 0.90285 0.91595 0.89826 0.86070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -12.76 19.25 74.32 1.43 -11.33 16 2 C -0.13 -6.51 11.45 31.13 0.36 -6.15 16 3 C 0.28 14.06 5.46 84.58 0.46 14.52 16 4 N -0.58 -29.35 1.98 -716.92 -1.42 -30.77 16 5 C -0.26 -14.51 9.69 84.03 0.81 -13.70 16 6 H 0.07 3.94 7.95 -2.91 -0.02 3.92 16 7 C -0.04 -2.51 4.88 84.86 0.41 -2.09 16 8 N -0.91 -53.50 9.18 21.65 0.20 -53.30 16 9 Si 0.95 47.05 29.62 68.60 2.03 49.08 16 10 H -0.30 -14.93 7.11 99.48 0.71 -14.23 16 11 H -0.29 -14.42 7.11 99.48 0.71 -13.71 16 12 H -0.27 -12.93 7.11 99.48 0.71 -12.22 16 13 C 0.13 5.07 6.15 85.64 0.53 5.59 16 14 C 0.49 18.45 7.86 87.66 0.69 19.14 16 15 O -0.57 -27.51 16.09 -3.02 -0.05 -27.56 16 16 N -0.72 -19.93 5.03 -446.08 -2.24 -22.18 16 17 C 0.19 4.93 2.78 44.25 0.12 5.05 16 18 H 0.07 2.10 7.44 -2.38 -0.02 2.08 16 19 C -0.15 -3.76 9.46 71.98 0.68 -3.08 16 20 C -0.10 -2.10 4.95 -19.87 -0.10 -2.19 16 21 C -0.12 -2.20 9.06 22.27 0.20 -2.00 16 22 C -0.12 -1.87 9.70 22.27 0.22 -1.65 16 23 C -0.10 -1.52 5.88 -19.86 -0.12 -1.64 16 24 C -0.12 -1.13 9.60 71.24 0.68 -0.45 16 25 C -0.09 -1.65 5.88 -19.87 -0.12 -1.76 16 26 C -0.12 -1.44 9.61 71.24 0.68 -0.75 16 27 C -0.12 -2.55 9.32 22.27 0.21 -2.34 16 28 H 0.23 7.99 7.80 -4.41 -0.03 7.95 16 29 H 0.06 3.61 6.35 -2.39 -0.02 3.59 16 30 H 0.05 2.38 8.07 -2.39 -0.02 2.36 16 31 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 32 H 0.10 3.18 8.06 -2.39 -0.02 3.16 16 33 H 0.09 3.31 8.05 -2.39 -0.02 3.29 16 34 H 0.41 8.64 6.87 -92.71 -0.64 8.00 16 35 H 0.07 1.55 8.14 -2.39 -0.02 1.54 16 36 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.13 2.00 6.92 -2.91 -0.02 1.98 16 39 H 0.14 1.59 8.06 -2.91 -0.02 1.56 16 40 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 41 H 0.07 0.60 8.09 -2.39 -0.02 0.58 16 42 H 0.08 0.64 5.94 -2.39 -0.01 0.62 16 43 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.07 0.81 8.09 -2.39 -0.02 0.79 16 45 H 0.08 0.78 5.94 -2.39 -0.01 0.77 16 46 H 0.12 2.44 8.04 -2.91 -0.02 2.42 16 Total: -1.00 -73.26 384.89 6.01 -67.25 By element: Atomic # 1 Polarization: 21.98 SS G_CDS: 0.33 Total: 22.32 kcal Atomic # 6 Polarization: -12.00 SS G_CDS: 7.16 Total: -4.85 kcal Atomic # 7 Polarization: -102.79 SS G_CDS: -3.46 Total: -106.25 kcal Atomic # 8 Polarization: -27.51 SS G_CDS: -0.05 Total: -27.56 kcal Atomic # 14 Polarization: 47.05 SS G_CDS: 2.03 Total: 49.08 kcal Total: -73.26 6.01 -67.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281224681.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.019 kcal (2) G-P(sol) polarization free energy of solvation -73.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds