Wall clock time and date at job start Tue Mar 31 2020 10:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86798 * 120.00458 * 2 1 4 4 H 1.48499 * 109.47138 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47049 * 299.99797 * 3 2 1 6 6 H 1.48503 * 109.47081 * 59.99783 * 3 2 1 7 7 C 1.38814 * 119.99734 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00190 * 156.88379 * 7 2 1 9 9 N 1.36939 * 120.00273 * 336.88966 * 7 2 1 10 10 C 1.46509 * 119.99486 * 323.98156 * 9 7 2 11 11 C 1.53000 * 109.47177 * 270.00203 * 10 9 7 12 12 H 1.09005 * 110.91374 * 51.09884 * 11 10 9 13 13 C 1.55157 * 111.00462 * 174.99928 * 11 10 9 14 14 C 1.54322 * 102.94159 * 153.57487 * 13 11 10 15 15 N 1.47022 * 107.27377 * 337.80793 * 14 13 11 16 16 C 1.34780 * 125.65147 * 178.97345 * 15 14 13 17 17 O 1.21548 * 120.00031 * 174.68299 * 16 15 14 18 18 C 1.47839 * 119.99581 * 354.68577 * 16 15 14 19 19 C 1.39570 * 120.14849 * 7.92886 * 18 16 15 20 20 C 1.37962 * 119.85473 * 179.78761 * 19 18 16 21 21 C 1.38361 * 120.14403 * 0.49529 * 20 19 18 22 22 C 1.38360 * 120.29131 * 359.73288 * 21 20 19 23 23 C 1.37956 * 120.14526 * 0.03088 * 22 21 20 24 24 C 1.47429 * 108.70119 * 358.94450 * 15 14 13 25 25 C 1.46492 * 120.00603 * 143.98195 * 9 7 2 26 26 C 1.53000 * 117.49687 * 8.24337 * 25 9 7 27 27 C 1.52993 * 59.99909 * 252.50653 * 26 25 9 28 28 H 0.97001 * 119.99568 * 5.34765 * 1 2 3 29 29 H 1.08997 * 109.46612 * 150.00324 * 10 9 7 30 30 H 1.09000 * 109.46940 * 30.00082 * 10 9 7 31 31 H 1.09001 * 110.71471 * 35.21181 * 13 11 10 32 32 H 1.08996 * 110.72218 * 271.93883 * 13 11 10 33 33 H 1.08995 * 109.88287 * 97.22297 * 14 13 11 34 34 H 1.08997 * 109.88213 * 218.39168 * 14 13 11 35 35 H 1.07998 * 120.07347 * 0.02562 * 19 18 16 36 36 H 1.08001 * 119.92740 * 180.22747 * 20 19 18 37 37 H 1.07999 * 119.85605 * 179.72106 * 21 20 19 38 38 H 1.08002 * 119.92901 * 180.02562 * 22 21 20 39 39 H 1.08003 * 120.07536 * 179.97438 * 23 22 21 40 40 H 1.09001 * 110.36922 * 142.96875 * 24 15 14 41 41 H 1.09005 * 110.36110 * 265.17946 * 24 15 14 42 42 H 1.08996 * 115.55170 * 153.94496 * 25 9 7 43 43 H 1.09004 * 117.49846 * 359.97438 * 26 25 9 44 44 H 1.09007 * 117.49947 * 145.02011 * 26 25 9 45 45 H 1.08997 * 117.50306 * 252.50612 * 27 26 25 46 46 H 1.09004 * 117.51645 * 107.48259 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7102 1.3462 0.0006 5 1 1.8916 2.3963 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0251 -1.2400 -0.3666 9 7 1.4079 -2.3403 0.4665 10 6 0.4863 -2.2685 1.6031 11 6 1.2672 -2.4553 2.9055 12 1 2.1225 -1.7807 2.9465 13 6 0.3461 -2.2611 4.1390 14 6 1.0384 -3.1119 5.2246 15 7 1.8737 -4.1053 4.5340 16 6 2.6560 -5.0257 5.1318 17 8 3.2307 -5.8619 4.4626 18 6 2.8150 -5.0181 6.6016 19 6 2.0326 -4.1702 7.3870 20 6 2.1829 -4.1713 8.7584 21 6 3.1141 -5.0030 9.3546 22 6 3.8963 -5.8426 8.5815 23 6 3.7525 -5.8548 7.2095 24 6 1.7132 -3.9285 3.0791 25 6 1.6851 -3.6296 -0.1714 26 6 2.7962 -3.6734 -1.2222 27 6 1.3317 -3.7753 -1.6528 28 1 -0.4849 0.8364 -0.0783 29 1 -0.2634 -3.0546 1.5131 30 1 -0.0059 -1.2960 1.6109 31 1 -0.6562 -2.6376 3.9348 32 1 0.3126 -1.2124 4.4340 33 1 1.6620 -2.4756 5.8525 34 1 0.2888 -3.6170 5.8337 35 1 1.3083 -3.5175 6.9225 36 1 1.5755 -3.5183 9.3675 37 1 3.2311 -4.9968 10.4283 38 1 4.6210 -6.4897 9.0531 39 1 4.3639 -6.5102 6.6070 40 1 2.6611 -4.1006 2.5692 41 1 0.9491 -4.6055 2.6968 42 1 1.5587 -4.5057 0.4647 43 1 3.3208 -2.7429 -1.4392 44 1 3.4012 -4.5785 -1.2776 45 1 0.9731 -4.7473 -1.9915 46 1 0.8925 -2.9120 -2.1528 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000283366130.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:28:22 Heat of formation + Delta-G solvation = 65.812954 kcal Electronic energy + Delta-G solvation = -26251.593079 eV Core-core repulsion = 22722.557363 eV Total energy + Delta-G solvation = -3529.035716 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.49116 -38.59880 -37.51362 -36.64672 -33.78020 -32.40213 -31.13988 -31.04485 -30.22218 -28.59614 -25.74542 -24.64471 -23.35721 -22.69488 -21.96990 -21.32404 -20.09243 -19.75032 -19.60483 -17.32028 -16.66534 -16.45140 -15.92784 -15.64004 -15.33463 -14.68017 -14.52045 -14.44276 -14.07503 -13.85315 -13.65448 -13.40820 -12.95894 -12.78848 -12.72152 -12.37250 -12.17517 -11.87687 -11.68952 -11.50022 -11.32414 -10.95244 -10.86716 -10.70691 -10.51553 -10.29371 -10.15662 -9.94407 -9.83992 -9.65542 -9.58119 -9.22313 -9.17719 -9.14222 -8.51779 -8.46505 -6.51159 -5.88498 -3.39725 0.74217 1.17919 2.86990 3.09302 3.29260 3.39208 3.42681 3.75937 4.38273 4.43948 4.62594 4.73683 4.78506 4.91831 4.96495 5.00502 5.13408 5.22383 5.28262 5.28972 5.34858 5.46584 5.62458 5.67430 5.78487 5.88950 5.96688 6.10654 6.12805 6.14173 6.16159 6.17872 6.24006 6.27626 6.37206 6.38479 6.52202 6.54699 6.66259 6.70490 6.76899 7.03837 7.09502 7.26090 7.53274 7.65729 7.81082 8.25079 8.46346 9.11886 9.74800 10.31654 11.13355 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.016915 B = 0.003475 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.979282 B = 8054.902682 C = 8914.395930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.015 3.985 3 Si 0.896 3.104 4 H -0.275 1.275 5 H -0.290 1.290 6 H -0.287 1.287 7 C -0.260 4.260 8 H 0.066 0.934 9 N -0.551 5.551 10 C 0.161 3.839 11 C -0.113 4.113 12 H 0.084 0.916 13 C -0.130 4.130 14 C 0.091 3.909 15 N -0.609 5.609 16 C 0.567 3.433 17 O -0.542 6.542 18 C -0.126 4.126 19 C -0.125 4.125 20 C -0.130 4.130 21 C -0.101 4.101 22 C -0.132 4.132 23 C -0.063 4.063 24 C 0.116 3.884 25 C 0.121 3.879 26 C -0.200 4.200 27 C -0.221 4.221 28 H 0.256 0.744 29 H 0.030 0.970 30 H 0.104 0.896 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.162 0.838 36 H 0.127 0.873 37 H 0.124 0.876 38 H 0.127 0.873 39 H 0.134 0.866 40 H 0.078 0.922 41 H 0.063 0.937 42 H 0.088 0.912 43 H 0.095 0.905 44 H 0.073 0.927 45 H 0.068 0.932 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.164 -6.922 16.828 18.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.185 4.185 3 Si 0.725 3.275 4 H -0.200 1.200 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.390 4.390 8 H 0.083 0.917 9 N -0.267 5.267 10 C 0.034 3.966 11 C -0.135 4.135 12 H 0.103 0.897 13 C -0.169 4.169 14 C -0.032 4.032 15 N -0.342 5.342 16 C 0.356 3.644 17 O -0.420 6.420 18 C -0.129 4.129 19 C -0.142 4.142 20 C -0.148 4.148 21 C -0.119 4.119 22 C -0.150 4.150 23 C -0.082 4.082 24 C -0.005 4.005 25 C 0.012 3.988 26 C -0.239 4.239 27 C -0.262 4.262 28 H 0.066 0.934 29 H 0.048 0.952 30 H 0.122 0.878 31 H 0.095 0.905 32 H 0.100 0.900 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.179 0.821 36 H 0.145 0.855 37 H 0.142 0.858 38 H 0.145 0.855 39 H 0.152 0.848 40 H 0.096 0.904 41 H 0.081 0.919 42 H 0.106 0.894 43 H 0.114 0.886 44 H 0.091 0.909 45 H 0.087 0.913 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 1.386 -7.251 16.570 18.140 hybrid contribution 0.466 0.878 -0.045 0.995 sum 1.851 -6.373 16.525 17.808 Atomic orbital electron populations 1.69915 1.05540 1.25999 1.51515 1.25159 0.95024 0.98645 0.99705 0.86334 0.79901 0.83873 0.77389 1.20033 1.21654 1.21342 1.19070 0.95330 0.85128 1.39427 0.91672 1.43429 1.51204 1.01453 1.30603 1.20910 0.90181 1.03124 0.82383 1.23196 0.99610 0.93928 0.96761 0.89739 1.22741 0.99506 0.99793 0.94850 1.22540 0.93652 0.90853 0.96114 1.48520 1.43947 1.32858 1.08860 1.17978 0.78688 0.80570 0.87134 1.90763 1.48174 1.37336 1.65770 1.19987 0.99931 1.00003 0.92999 1.22845 0.99153 0.97783 0.94427 1.21177 0.99137 0.99794 0.94717 1.21380 0.95207 0.95344 1.00008 1.21138 1.00325 0.99963 0.93528 1.21307 0.95870 0.96369 0.94694 1.22489 1.01814 0.97729 0.78468 1.21238 1.00066 0.90090 0.87378 1.23041 0.91810 1.01638 1.07362 1.23321 0.97978 1.00822 1.04067 0.93372 0.95183 0.87812 0.90514 0.90001 0.90715 0.90915 0.82099 0.85536 0.85846 0.85506 0.84811 0.90375 0.91879 0.89420 0.88628 0.90855 0.91330 0.88989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.01 11.46 55.49 0.64 -23.37 16 2 C 0.02 0.39 4.92 -17.43 -0.09 0.31 16 3 Si 0.90 20.70 29.62 -169.99 -5.03 15.66 16 4 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.26 -6.71 8.62 -15.06 -0.13 -6.84 16 8 H 0.07 1.72 6.45 -52.49 -0.34 1.38 16 9 N -0.55 -12.87 2.75 -165.67 -0.46 -13.33 16 10 C 0.16 3.39 4.84 -4.04 -0.02 3.37 16 11 C -0.11 -1.99 3.26 -88.47 -0.29 -2.28 16 12 H 0.08 1.67 8.14 -51.93 -0.42 1.24 16 13 C -0.13 -1.75 6.42 -24.90 -0.16 -1.91 16 14 C 0.09 1.09 4.87 -3.06 -0.01 1.07 16 15 N -0.61 -9.41 3.33 -175.05 -0.58 -9.99 16 16 C 0.57 9.38 7.81 -12.33 -0.10 9.29 16 17 O -0.54 -10.78 16.68 5.32 0.09 -10.69 16 18 C -0.13 -1.70 5.87 -104.97 -0.62 -2.31 16 19 C -0.12 -1.35 8.60 -39.19 -0.34 -1.68 16 20 C -0.13 -1.16 10.03 -39.64 -0.40 -1.56 16 21 C -0.10 -0.86 10.04 -39.49 -0.40 -1.26 16 22 C -0.13 -1.25 10.03 -39.64 -0.40 -1.65 16 23 C -0.06 -0.77 9.59 -39.18 -0.38 -1.15 16 24 C 0.12 2.00 5.15 -2.53 -0.01 1.99 16 25 C 0.12 2.57 6.21 -67.94 -0.42 2.15 16 26 C -0.20 -4.02 9.82 -26.73 -0.26 -4.29 16 27 C -0.22 -4.56 10.28 -26.74 -0.27 -4.83 16 28 H 0.26 6.71 8.32 -40.82 -0.34 6.37 16 29 H 0.03 0.61 7.89 -51.93 -0.41 0.20 16 30 H 0.10 2.48 5.47 -51.93 -0.28 2.20 16 31 H 0.08 0.98 8.04 -51.93 -0.42 0.56 16 32 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.07 0.80 6.66 -51.93 -0.35 0.46 16 34 H 0.07 0.72 6.81 -51.93 -0.35 0.36 16 35 H 0.16 1.52 2.78 -56.92 -0.16 1.36 16 36 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 37 H 0.12 0.73 8.06 -52.49 -0.42 0.30 16 38 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 39 H 0.13 1.65 7.67 -52.48 -0.40 1.25 16 40 H 0.08 1.52 8.09 -51.93 -0.42 1.10 16 41 H 0.06 1.08 7.73 -51.93 -0.40 0.68 16 42 H 0.09 1.72 7.16 -51.93 -0.37 1.35 16 43 H 0.10 2.07 6.33 -51.93 -0.33 1.75 16 44 H 0.07 1.31 8.14 -51.92 -0.42 0.88 16 45 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 46 H 0.09 2.15 8.14 -51.93 -0.42 1.72 16 LS Contribution 365.82 15.07 5.51 5.51 Total: -1.00 -30.01 365.82 -10.87 -40.88 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: -6.75 Total: 6.92 kcal Atomic # 6 Polarization: -7.30 SS G_CDS: -4.29 Total: -11.59 kcal Atomic # 7 Polarization: -46.29 SS G_CDS: -0.40 Total: -46.70 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: 0.09 Total: -10.69 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.03 Total: 15.66 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.01 -10.87 -40.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283366130.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.694 kcal (2) G-P(sol) polarization free energy of solvation -30.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.881 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds