Wall clock time and date at job start Tue Mar 31 2020 10:28:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86798 * 120.00458 * 2 1 4 4 H 1.48499 * 109.47138 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47049 * 299.99797 * 3 2 1 6 6 H 1.48503 * 109.47081 * 59.99783 * 3 2 1 7 7 C 1.38814 * 119.99734 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00190 * 156.88379 * 7 2 1 9 9 N 1.36939 * 120.00273 * 336.88966 * 7 2 1 10 10 C 1.46509 * 119.99486 * 323.98156 * 9 7 2 11 11 C 1.53000 * 109.47177 * 270.00203 * 10 9 7 12 12 H 1.09005 * 110.91374 * 51.09884 * 11 10 9 13 13 C 1.55157 * 111.00462 * 174.99928 * 11 10 9 14 14 C 1.54322 * 102.94159 * 153.57487 * 13 11 10 15 15 N 1.47022 * 107.27377 * 337.80793 * 14 13 11 16 16 C 1.34780 * 125.65147 * 178.97345 * 15 14 13 17 17 O 1.21548 * 120.00031 * 174.68299 * 16 15 14 18 18 C 1.47839 * 119.99581 * 354.68577 * 16 15 14 19 19 C 1.39570 * 120.14849 * 7.92886 * 18 16 15 20 20 C 1.37962 * 119.85473 * 179.78761 * 19 18 16 21 21 C 1.38361 * 120.14403 * 0.49529 * 20 19 18 22 22 C 1.38360 * 120.29131 * 359.73288 * 21 20 19 23 23 C 1.37956 * 120.14526 * 0.03088 * 22 21 20 24 24 C 1.47429 * 108.70119 * 358.94450 * 15 14 13 25 25 C 1.46492 * 120.00603 * 143.98195 * 9 7 2 26 26 C 1.53000 * 117.49687 * 8.24337 * 25 9 7 27 27 C 1.52993 * 59.99909 * 252.50653 * 26 25 9 28 28 H 0.97001 * 119.99568 * 5.34765 * 1 2 3 29 29 H 1.08997 * 109.46612 * 150.00324 * 10 9 7 30 30 H 1.09000 * 109.46940 * 30.00082 * 10 9 7 31 31 H 1.09001 * 110.71471 * 35.21181 * 13 11 10 32 32 H 1.08996 * 110.72218 * 271.93883 * 13 11 10 33 33 H 1.08995 * 109.88287 * 97.22297 * 14 13 11 34 34 H 1.08997 * 109.88213 * 218.39168 * 14 13 11 35 35 H 1.07998 * 120.07347 * 0.02562 * 19 18 16 36 36 H 1.08001 * 119.92740 * 180.22747 * 20 19 18 37 37 H 1.07999 * 119.85605 * 179.72106 * 21 20 19 38 38 H 1.08002 * 119.92901 * 180.02562 * 22 21 20 39 39 H 1.08003 * 120.07536 * 179.97438 * 23 22 21 40 40 H 1.09001 * 110.36922 * 142.96875 * 24 15 14 41 41 H 1.09005 * 110.36110 * 265.17946 * 24 15 14 42 42 H 1.08996 * 115.55170 * 153.94496 * 25 9 7 43 43 H 1.09004 * 117.49846 * 359.97438 * 26 25 9 44 44 H 1.09007 * 117.49947 * 145.02011 * 26 25 9 45 45 H 1.08997 * 117.50306 * 252.50612 * 27 26 25 46 46 H 1.09004 * 117.51645 * 107.48259 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7102 1.3462 0.0006 5 1 1.8916 2.3963 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0251 -1.2400 -0.3666 9 7 1.4079 -2.3403 0.4665 10 6 0.4863 -2.2685 1.6031 11 6 1.2672 -2.4553 2.9055 12 1 2.1225 -1.7807 2.9465 13 6 0.3461 -2.2611 4.1390 14 6 1.0384 -3.1119 5.2246 15 7 1.8737 -4.1053 4.5340 16 6 2.6560 -5.0257 5.1318 17 8 3.2307 -5.8619 4.4626 18 6 2.8150 -5.0181 6.6016 19 6 2.0326 -4.1702 7.3870 20 6 2.1829 -4.1713 8.7584 21 6 3.1141 -5.0030 9.3546 22 6 3.8963 -5.8426 8.5815 23 6 3.7525 -5.8548 7.2095 24 6 1.7132 -3.9285 3.0791 25 6 1.6851 -3.6296 -0.1714 26 6 2.7962 -3.6734 -1.2222 27 6 1.3317 -3.7753 -1.6528 28 1 -0.4849 0.8364 -0.0783 29 1 -0.2634 -3.0546 1.5131 30 1 -0.0059 -1.2960 1.6109 31 1 -0.6562 -2.6376 3.9348 32 1 0.3126 -1.2124 4.4340 33 1 1.6620 -2.4756 5.8525 34 1 0.2888 -3.6170 5.8337 35 1 1.3083 -3.5175 6.9225 36 1 1.5755 -3.5183 9.3675 37 1 3.2311 -4.9968 10.4283 38 1 4.6210 -6.4897 9.0531 39 1 4.3639 -6.5102 6.6070 40 1 2.6611 -4.1006 2.5692 41 1 0.9491 -4.6055 2.6968 42 1 1.5587 -4.5057 0.4647 43 1 3.3208 -2.7429 -1.4392 44 1 3.4012 -4.5785 -1.2776 45 1 0.9731 -4.7473 -1.9915 46 1 0.8925 -2.9120 -2.1528 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000283366130.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:28:21 Heat of formation + Delta-G solvation = 50.453119 kcal Electronic energy + Delta-G solvation = -26252.259131 eV Core-core repulsion = 22722.557363 eV Total energy + Delta-G solvation = -3529.701768 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.60830 -39.64229 -38.89963 -38.17380 -35.46323 -33.88861 -32.30016 -31.92416 -31.60869 -29.93848 -27.32029 -26.14782 -24.70885 -23.58279 -23.05584 -22.92559 -21.64764 -21.22602 -20.87104 -18.39918 -18.32338 -17.47294 -17.40252 -16.95209 -16.71919 -16.38580 -15.72933 -15.52195 -15.45680 -15.06332 -14.70697 -14.58515 -14.33077 -14.10076 -13.92652 -13.76243 -13.43741 -13.30150 -13.12713 -12.94421 -12.69170 -12.49379 -12.42671 -12.22206 -11.96682 -11.81629 -11.67784 -11.52588 -11.35377 -11.29099 -10.99689 -10.88267 -10.47143 -10.02366 -9.93066 -9.66060 -8.41745 -7.85167 -5.40023 -0.12454 0.43114 1.42738 1.47955 1.57068 1.78907 1.91897 2.48466 2.89844 3.13300 3.34100 3.41307 3.52537 3.64479 3.86681 4.00885 4.05871 4.10805 4.22305 4.24451 4.29161 4.41460 4.48546 4.50802 4.53738 4.56777 4.60523 4.76173 4.80817 4.87049 4.90865 4.94778 5.03614 5.07028 5.10713 5.17866 5.28361 5.33827 5.41758 5.46668 5.50741 5.51917 5.54324 5.70022 5.82153 5.98179 6.45263 6.49279 7.01550 7.17456 7.86448 8.38073 9.12904 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.016915 B = 0.003475 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.979282 B = 8054.902682 C = 8914.395930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C -0.025 4.025 3 Si 0.951 3.049 4 H -0.276 1.276 5 H -0.293 1.293 6 H -0.282 1.282 7 C -0.265 4.265 8 H 0.052 0.948 9 N -0.566 5.566 10 C 0.165 3.835 11 C -0.105 4.105 12 H 0.059 0.941 13 C -0.122 4.122 14 C 0.092 3.908 15 N -0.611 5.611 16 C 0.559 3.441 17 O -0.591 6.591 18 C -0.154 4.154 19 C -0.125 4.125 20 C -0.127 4.127 21 C -0.092 4.092 22 C -0.131 4.131 23 C -0.085 4.085 24 C 0.126 3.874 25 C 0.106 3.894 26 C -0.191 4.191 27 C -0.215 4.215 28 H 0.255 0.745 29 H 0.033 0.967 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.106 0.894 35 H 0.175 0.825 36 H 0.161 0.839 37 H 0.159 0.841 38 H 0.151 0.849 39 H 0.117 0.883 40 H 0.047 0.953 41 H 0.063 0.937 42 H 0.104 0.896 43 H 0.075 0.925 44 H 0.102 0.898 45 H 0.098 0.902 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.747 -6.882 20.165 21.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.223 4.223 3 Si 0.779 3.221 4 H -0.201 1.201 5 H -0.220 1.220 6 H -0.208 1.208 7 C -0.395 4.395 8 H 0.070 0.930 9 N -0.283 5.283 10 C 0.039 3.961 11 C -0.126 4.126 12 H 0.077 0.923 13 C -0.160 4.160 14 C -0.029 4.029 15 N -0.342 5.342 16 C 0.351 3.649 17 O -0.474 6.474 18 C -0.157 4.157 19 C -0.143 4.143 20 C -0.145 4.145 21 C -0.110 4.110 22 C -0.149 4.149 23 C -0.104 4.104 24 C 0.004 3.996 25 C -0.002 4.002 26 C -0.229 4.229 27 C -0.255 4.255 28 H 0.064 0.936 29 H 0.052 0.948 30 H 0.096 0.904 31 H 0.106 0.894 32 H 0.113 0.887 33 H 0.112 0.888 34 H 0.124 0.876 35 H 0.191 0.809 36 H 0.178 0.822 37 H 0.176 0.824 38 H 0.168 0.832 39 H 0.135 0.865 40 H 0.066 0.934 41 H 0.081 0.919 42 H 0.121 0.879 43 H 0.093 0.907 44 H 0.120 0.880 45 H 0.116 0.884 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.956 -7.201 19.930 21.213 hybrid contribution 0.617 0.809 -1.046 1.459 sum 1.573 -6.392 18.884 19.999 Atomic orbital electron populations 1.70024 1.06484 1.26336 1.52744 1.25690 0.95652 1.00917 1.00028 0.85482 0.78722 0.80721 0.77151 1.20061 1.21990 1.20782 1.19133 0.94935 0.86397 1.39042 0.93019 1.43618 1.51436 1.01587 1.31691 1.20817 0.90254 1.01682 0.83349 1.22851 0.99181 0.93560 0.97028 0.92294 1.22736 0.99112 1.01160 0.92989 1.22801 0.94086 0.90333 0.95714 1.48570 1.44213 1.33314 1.08148 1.18626 0.77846 0.79840 0.88613 1.90717 1.50164 1.39367 1.67139 1.19863 1.02262 1.02517 0.91012 1.22986 0.98788 0.97203 0.95308 1.21605 0.99081 0.99758 0.94032 1.21853 0.93719 0.93706 1.01724 1.21435 1.00835 1.00367 0.92267 1.21364 0.96201 0.96705 0.96105 1.22181 1.00128 0.97365 0.79949 1.21448 1.01075 0.89825 0.87900 1.23026 0.91691 1.01945 1.06260 1.23235 0.98220 1.00956 1.03133 0.93594 0.94842 0.90392 0.89417 0.88696 0.88777 0.87649 0.80876 0.82180 0.82355 0.83160 0.86504 0.93395 0.91894 0.87858 0.90656 0.87991 0.88379 0.92208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.44 11.46 21.65 0.25 -50.19 16 2 C -0.02 -1.32 4.92 84.86 0.42 -0.91 16 3 Si 0.95 43.32 29.62 68.60 2.03 45.35 16 4 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 5 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 6 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 7 C -0.26 -14.10 8.62 84.03 0.72 -13.37 16 8 H 0.05 2.85 6.45 -2.91 -0.02 2.83 16 9 N -0.57 -27.28 2.75 -678.05 -1.87 -29.14 16 10 C 0.17 7.11 4.84 86.38 0.42 7.53 16 11 C -0.10 -3.72 3.26 -9.40 -0.03 -3.75 16 12 H 0.06 2.39 8.14 -2.38 -0.02 2.38 16 13 C -0.12 -3.07 6.42 31.78 0.20 -2.87 16 14 C 0.09 1.98 4.87 86.73 0.42 2.40 16 15 N -0.61 -18.73 3.33 -826.01 -2.75 -21.48 16 16 C 0.56 18.88 7.81 86.78 0.68 19.55 16 17 O -0.59 -24.82 16.68 -3.87 -0.06 -24.88 16 18 C -0.15 -4.02 5.87 -20.09 -0.12 -4.14 16 19 C -0.13 -2.34 8.60 22.53 0.19 -2.14 16 20 C -0.13 -1.70 10.03 22.23 0.22 -1.48 16 21 C -0.09 -1.17 10.04 22.33 0.22 -0.94 16 22 C -0.13 -2.16 10.03 22.23 0.22 -1.94 16 23 C -0.08 -2.04 9.59 22.53 0.22 -1.82 16 24 C 0.13 4.44 5.15 86.85 0.45 4.89 16 25 C 0.11 4.57 6.21 44.99 0.28 4.84 16 26 C -0.19 -7.72 9.82 30.59 0.30 -7.41 16 27 C -0.21 -8.88 10.28 30.59 0.31 -8.56 16 28 H 0.25 13.58 8.32 -92.71 -0.77 12.81 16 29 H 0.03 1.38 7.89 -2.39 -0.02 1.36 16 30 H 0.08 3.83 5.47 -2.39 -0.01 3.81 16 31 H 0.09 2.05 8.04 -2.39 -0.02 2.03 16 32 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 33 H 0.09 1.72 6.66 -2.39 -0.02 1.71 16 34 H 0.11 1.67 6.81 -2.39 -0.02 1.65 16 35 H 0.17 2.61 2.78 -7.08 -0.02 2.59 16 36 H 0.16 1.09 8.06 -2.91 -0.02 1.07 16 37 H 0.16 0.93 8.06 -2.91 -0.02 0.91 16 38 H 0.15 1.67 8.06 -2.91 -0.02 1.65 16 39 H 0.12 3.08 7.67 -2.91 -0.02 3.06 16 40 H 0.05 1.96 8.09 -2.39 -0.02 1.94 16 41 H 0.06 2.20 7.73 -2.38 -0.02 2.18 16 42 H 0.10 4.08 7.16 -2.39 -0.02 4.07 16 43 H 0.07 3.36 6.33 -2.38 -0.02 3.34 16 44 H 0.10 3.52 8.14 -2.38 -0.02 3.50 16 45 H 0.10 3.45 8.14 -2.39 -0.02 3.43 16 46 H 0.06 2.86 8.14 -2.38 -0.02 2.85 16 Total: -1.00 -69.10 365.82 3.71 -65.39 By element: Atomic # 1 Polarization: 24.11 SS G_CDS: 0.97 Total: 25.07 kcal Atomic # 6 Polarization: -15.26 SS G_CDS: 5.14 Total: -10.12 kcal Atomic # 7 Polarization: -96.45 SS G_CDS: -4.37 Total: -100.81 kcal Atomic # 8 Polarization: -24.82 SS G_CDS: -0.06 Total: -24.88 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Total: -69.10 3.71 -65.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283366130.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.843 kcal (2) G-P(sol) polarization free energy of solvation -69.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds