Wall clock time and date at job start Tue Mar 31 2020 10:56:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86805 * 119.99849 * 2 1 4 4 H 1.48502 * 109.47102 * 274.99254 * 3 2 1 5 5 H 1.48505 * 109.47009 * 34.99272 * 3 2 1 6 6 H 1.48505 * 109.46903 * 154.99226 * 3 2 1 7 7 C 1.39933 * 120.00056 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99567 * 147.68377 * 7 2 1 9 9 C 1.41400 * 120.00277 * 327.95796 * 7 2 1 10 10 C 1.40782 * 120.20933 * 338.17037 * 9 7 2 11 11 C 1.37638 * 119.88226 * 179.71348 * 10 9 7 12 12 C 1.38533 * 120.32514 * 0.55979 * 11 10 9 13 13 C 1.39250 * 120.42224 * 359.71697 * 12 11 10 14 14 N 1.39966 * 119.94134 * 180.02562 * 13 12 11 15 15 C 1.34771 * 119.99639 * 143.93816 * 14 13 12 16 16 O 1.21581 * 120.00425 * 3.15731 * 15 14 13 17 17 N 1.34778 * 119.99756 * 183.16043 * 15 14 13 18 18 C 1.47913 * 122.26887 * 4.65334 * 17 15 14 19 19 C 1.52704 * 111.05195 * 127.89046 * 18 17 15 20 20 C 1.53854 * 111.63876 * 48.41102 * 19 18 17 21 21 C 1.51327 * 107.22659 * 302.83844 * 20 19 18 22 22 H 1.08996 * 109.60191 * 307.88710 * 21 20 19 23 23 C 1.52211 * 117.80192 * 181.71390 * 21 20 19 24 24 C 1.55061 * 105.12691 * 212.11272 * 23 21 20 25 25 C 1.55459 * 106.32234 * 3.91811 * 24 23 21 26 26 C 1.45521 * 122.27322 * 184.36334 * 17 15 14 27 27 H 1.08995 * 110.34121 * 120.84162 * 26 17 15 28 28 C 1.38268 * 120.11193 * 359.97438 * 13 12 11 29 29 H 0.96999 * 119.99977 * 359.97438 * 1 2 3 30 30 H 1.08000 * 120.05271 * 359.97379 * 10 9 7 31 31 H 1.08002 * 119.83655 * 180.29673 * 11 10 9 32 32 H 1.07996 * 119.79038 * 179.69216 * 12 11 10 33 33 H 0.96995 * 119.99518 * 323.92728 * 14 13 12 34 34 H 1.08993 * 109.16147 * 248.29222 * 18 17 15 35 35 H 1.08995 * 109.16254 * 7.48985 * 18 17 15 36 36 H 1.09010 * 109.04857 * 168.96415 * 19 18 17 37 37 H 1.08998 * 109.04965 * 287.85347 * 19 18 17 38 38 H 1.09007 * 109.90489 * 62.26790 * 20 19 18 39 39 H 1.09001 * 109.90683 * 183.32872 * 20 19 18 40 40 H 1.08998 * 110.30997 * 331.02794 * 23 21 20 41 41 H 1.09001 * 110.31219 * 93.10169 * 23 21 20 42 42 H 1.08995 * 110.08490 * 123.13050 * 24 23 21 43 43 H 1.09004 * 110.08667 * 244.70732 * 24 23 21 44 44 H 1.09000 * 110.75173 * 142.41532 * 25 24 23 45 45 H 1.08994 * 110.75066 * 265.76287 * 25 24 23 46 46 H 1.08000 * 120.16267 * 180.02562 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.3842 2.1074 -1.3948 5 1 1.4964 2.6200 0.8029 6 1 3.5886 1.4121 0.5919 7 6 2.0080 -1.2119 -0.0005 8 1 2.9625 -1.2840 -0.5006 9 6 1.4626 -2.3435 0.6486 10 6 0.4936 -2.1830 1.6572 11 6 -0.0371 -3.2895 2.2806 12 6 0.3860 -4.5608 1.9286 13 6 1.3479 -4.7344 0.9368 14 7 1.7675 -6.0235 0.5887 15 6 2.0632 -6.3125 -0.6940 16 8 2.0209 -5.4395 -1.5392 17 7 2.4058 -7.5692 -1.0400 18 6 2.3761 -8.6898 -0.0749 19 6 1.5715 -9.8657 -0.6243 20 6 1.9885 -10.2156 -2.0633 21 6 1.8046 -8.9676 -2.8992 22 1 0.7965 -8.5782 -2.7580 23 6 2.1132 -9.0578 -4.3870 24 6 2.6401 -7.6525 -4.7769 25 6 2.7078 -6.8302 -3.4593 26 6 2.8241 -7.9170 -2.3897 27 1 3.8293 -8.3382 -2.3781 28 6 1.8883 -3.6357 0.2945 29 1 -0.4850 0.8400 0.0004 30 1 0.1643 -1.1936 1.9384 31 1 -0.7839 -3.1657 3.0509 32 1 -0.0326 -5.4227 2.4268 33 1 1.8457 -6.7087 1.2707 34 1 3.3964 -9.0169 0.1250 35 1 1.9217 -8.3489 0.8553 36 1 1.7311 -10.7350 0.0136 37 1 0.5124 -9.6080 -0.6136 38 1 3.0339 -10.5241 -2.0821 39 1 1.3583 -11.0174 -2.4479 40 1 2.8779 -9.8127 -4.5697 41 1 1.2085 -9.2932 -4.9475 42 1 3.6332 -7.7344 -5.2184 43 1 1.9553 -7.1777 -5.4796 44 1 3.5840 -6.1819 -3.4532 45 1 1.7959 -6.2499 -3.3190 46 1 2.6340 -3.7694 -0.4751 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334980739.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:25 Heat of formation + Delta-G solvation = -7.755428 kcal Electronic energy + Delta-G solvation = -26551.971278 eV Core-core repulsion = 23019.745398 eV Total energy + Delta-G solvation = -3532.225880 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.76739 -38.76216 -36.97546 -35.48688 -34.30652 -33.02156 -32.74645 -29.78757 -28.98768 -28.52862 -27.25909 -25.23992 -24.81963 -21.92032 -21.79972 -21.01853 -20.49408 -19.94991 -19.15036 -17.76817 -17.03597 -16.08413 -15.41277 -15.30837 -15.15776 -14.78897 -14.63416 -14.43320 -13.92073 -13.68036 -13.62090 -13.45374 -12.89502 -12.82460 -12.68262 -12.18472 -12.11746 -11.64231 -11.54827 -11.31645 -11.25431 -11.04486 -11.00128 -10.78815 -10.70962 -10.63710 -10.56868 -10.47359 -10.39218 -9.89843 -9.66970 -9.36257 -8.94908 -8.67160 -8.36285 -7.43378 -6.82550 -6.81625 -4.22764 2.77361 2.87588 3.06006 3.11500 3.15349 3.29196 3.74987 3.98076 4.12501 4.45801 4.55019 4.61869 4.66515 4.79059 4.96392 5.05921 5.22860 5.30959 5.34888 5.46003 5.55383 5.59821 5.68894 5.70819 5.77359 5.82300 5.87696 5.93378 6.01188 6.06887 6.27426 6.31460 6.44213 6.46834 6.49725 6.78306 6.90816 7.03357 7.09294 7.19320 7.24171 7.42083 7.74070 7.91394 8.04823 8.15569 8.31313 8.49287 8.69787 8.95103 9.05320 9.15900 10.15049 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.018533 B = 0.003504 C = 0.003081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.449416 B = 7988.085459 C = 9084.453052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.771 5.771 2 C 0.089 3.911 3 Si 0.895 3.105 4 H -0.270 1.270 5 H -0.275 1.275 6 H -0.258 1.258 7 C -0.466 4.466 8 H 0.080 0.920 9 C 0.124 3.876 10 C -0.191 4.191 11 C -0.084 4.084 12 C -0.275 4.275 13 C 0.173 3.827 14 N -0.683 5.683 15 C 0.705 3.295 16 O -0.554 6.554 17 N -0.628 5.628 18 C 0.114 3.886 19 C -0.133 4.133 20 C -0.104 4.104 21 C -0.115 4.115 22 H 0.075 0.925 23 C -0.112 4.112 24 C -0.128 4.128 25 C -0.115 4.115 26 C 0.158 3.842 27 H 0.071 0.929 28 C -0.214 4.214 29 H 0.281 0.719 30 H 0.104 0.896 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.391 0.609 34 H 0.065 0.935 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.061 0.939 43 H 0.065 0.935 44 H 0.069 0.931 45 H 0.100 0.900 46 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.910 -18.114 -2.850 18.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.132 4.132 3 Si 0.718 3.282 4 H -0.195 1.195 5 H -0.200 1.200 6 H -0.182 1.182 7 C -0.494 4.494 8 H 0.098 0.902 9 C 0.121 3.879 10 C -0.211 4.211 11 C -0.103 4.103 12 C -0.296 4.296 13 C 0.081 3.919 14 N -0.331 5.331 15 C 0.407 3.593 16 O -0.429 6.429 17 N -0.367 5.367 18 C -0.010 4.010 19 C -0.172 4.172 20 C -0.142 4.142 21 C -0.135 4.135 22 H 0.093 0.907 23 C -0.150 4.150 24 C -0.166 4.166 25 C -0.152 4.152 26 C 0.053 3.947 27 H 0.089 0.911 28 C -0.235 4.235 29 H 0.092 0.908 30 H 0.122 0.878 31 H 0.107 0.893 32 H 0.104 0.896 33 H 0.226 0.774 34 H 0.083 0.917 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.080 0.920 43 H 0.084 0.916 44 H 0.087 0.913 45 H 0.119 0.881 46 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 3.653 -17.305 -3.495 18.028 hybrid contribution 0.189 0.275 0.445 0.556 sum 3.842 -17.029 -3.050 17.722 Atomic orbital electron populations 1.69955 1.08069 1.29624 1.31706 1.25903 0.94303 1.01364 0.91647 0.86534 0.81485 0.81019 0.79132 1.19532 1.19973 1.18161 1.19493 1.05361 0.93562 1.30943 0.90178 1.17431 0.89603 0.91364 0.89499 1.21047 1.03303 0.96912 0.99823 1.20355 0.98531 0.92576 0.98805 1.19933 1.05863 0.96277 1.07551 1.17253 0.95719 0.81563 0.97360 1.42795 1.70482 1.12674 1.07133 1.15871 0.78287 0.81953 0.83182 1.90951 1.57925 1.45415 1.48625 1.47127 1.72053 1.06227 1.11249 1.21567 1.00340 0.87154 0.91926 1.21915 1.00704 0.97650 0.96908 1.21294 1.01460 0.97131 0.94311 1.21918 1.00683 0.96265 0.94640 0.90684 1.21808 1.00842 0.97443 0.94920 1.22627 1.00841 0.94967 0.98162 1.22465 1.05256 0.96265 0.91262 1.21483 0.96354 0.95687 0.81151 0.91111 1.20985 1.06998 0.90756 1.04775 0.90770 0.87799 0.89266 0.89613 0.77372 0.91717 0.90608 0.90747 0.91552 0.91686 0.91699 0.91833 0.91776 0.92025 0.91643 0.91259 0.88138 0.87129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -20.53 11.75 55.55 0.65 -19.88 16 2 C 0.09 2.31 4.79 -17.34 -0.08 2.23 16 3 Si 0.89 19.04 29.66 -169.99 -5.04 13.99 16 4 H -0.27 -5.66 7.11 56.52 0.40 -5.25 16 5 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 6 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 7 C -0.47 -13.01 8.96 -37.74 -0.34 -13.35 16 8 H 0.08 2.20 8.02 -52.48 -0.42 1.78 16 9 C 0.12 3.48 5.57 -106.85 -0.60 2.89 16 10 C -0.19 -5.11 8.79 -38.84 -0.34 -5.45 16 11 C -0.08 -2.00 10.02 -39.69 -0.40 -2.40 16 12 C -0.27 -6.25 9.97 -39.10 -0.39 -6.63 16 13 C 0.17 4.07 6.27 -83.76 -0.53 3.54 16 14 N -0.68 -12.94 5.24 -14.27 -0.07 -13.01 16 15 C 0.70 13.55 8.17 -86.92 -0.71 12.84 16 16 O -0.55 -12.92 10.71 5.29 0.06 -12.86 16 17 N -0.63 -9.03 2.93 -170.39 -0.50 -9.53 16 18 C 0.11 1.16 6.34 -3.42 -0.02 1.14 16 19 C -0.13 -1.13 5.93 -26.44 -0.16 -1.29 16 20 C -0.10 -0.88 5.72 -27.13 -0.16 -1.04 16 21 C -0.12 -1.25 2.28 -90.81 -0.21 -1.46 16 22 H 0.07 0.98 8.09 -51.93 -0.42 0.56 16 23 C -0.11 -1.08 6.53 -26.04 -0.17 -1.25 16 24 C -0.13 -1.43 6.88 -24.34 -0.17 -1.59 16 25 C -0.11 -1.69 4.96 -25.46 -0.13 -1.82 16 26 C 0.16 2.06 2.99 -67.44 -0.20 1.86 16 27 H 0.07 0.84 8.07 -51.93 -0.42 0.42 16 28 C -0.21 -5.70 8.42 -38.69 -0.33 -6.03 16 29 H 0.28 6.74 8.30 -40.82 -0.34 6.40 16 30 H 0.10 2.82 6.50 -52.49 -0.34 2.48 16 31 H 0.09 1.88 8.06 -52.49 -0.42 1.46 16 32 H 0.09 1.70 8.06 -52.49 -0.42 1.27 16 33 H 0.39 5.89 6.53 -40.82 -0.27 5.63 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.08 0.73 5.90 -51.93 -0.31 0.42 16 36 H 0.07 0.48 8.14 -51.92 -0.42 0.05 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.06 0.50 8.06 -51.93 -0.42 0.08 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.06 0.52 8.11 -51.93 -0.42 0.10 16 41 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.10 1.85 6.21 -51.93 -0.32 1.52 16 46 H 0.11 3.07 6.33 -52.49 -0.33 2.74 16 LS Contribution 355.54 15.07 5.36 5.36 Total: -1.00 -31.17 355.54 -11.49 -42.66 By element: Atomic # 1 Polarization: 18.11 SS G_CDS: -7.03 Total: 11.08 kcal Atomic # 6 Polarization: -12.89 SS G_CDS: -4.91 Total: -17.81 kcal Atomic # 7 Polarization: -42.51 SS G_CDS: 0.08 Total: -42.43 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: 0.06 Total: -12.86 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -5.04 Total: 13.99 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.17 -11.49 -42.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334980739.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.903 kcal (2) G-P(sol) polarization free energy of solvation -31.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds