Wall clock time and date at job start Tue Mar 31 2020 10:56:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86805 * 119.99849 * 2 1 4 4 H 1.48502 * 109.47102 * 274.99254 * 3 2 1 5 5 H 1.48505 * 109.47009 * 34.99272 * 3 2 1 6 6 H 1.48505 * 109.46903 * 154.99226 * 3 2 1 7 7 C 1.39933 * 120.00056 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99567 * 147.68377 * 7 2 1 9 9 C 1.41400 * 120.00277 * 327.95796 * 7 2 1 10 10 C 1.40782 * 120.20933 * 338.17037 * 9 7 2 11 11 C 1.37638 * 119.88226 * 179.71348 * 10 9 7 12 12 C 1.38533 * 120.32514 * 0.55979 * 11 10 9 13 13 C 1.39250 * 120.42224 * 359.71697 * 12 11 10 14 14 N 1.39966 * 119.94134 * 180.02562 * 13 12 11 15 15 C 1.34771 * 119.99639 * 143.93816 * 14 13 12 16 16 O 1.21581 * 120.00425 * 3.15731 * 15 14 13 17 17 N 1.34778 * 119.99756 * 183.16043 * 15 14 13 18 18 C 1.47913 * 122.26887 * 4.65334 * 17 15 14 19 19 C 1.52704 * 111.05195 * 127.89046 * 18 17 15 20 20 C 1.53854 * 111.63876 * 48.41102 * 19 18 17 21 21 C 1.51327 * 107.22659 * 302.83844 * 20 19 18 22 22 H 1.08996 * 109.60191 * 307.88710 * 21 20 19 23 23 C 1.52211 * 117.80192 * 181.71390 * 21 20 19 24 24 C 1.55061 * 105.12691 * 212.11272 * 23 21 20 25 25 C 1.55459 * 106.32234 * 3.91811 * 24 23 21 26 26 C 1.45521 * 122.27322 * 184.36334 * 17 15 14 27 27 H 1.08995 * 110.34121 * 120.84162 * 26 17 15 28 28 C 1.38268 * 120.11193 * 359.97438 * 13 12 11 29 29 H 0.96999 * 119.99977 * 359.97438 * 1 2 3 30 30 H 1.08000 * 120.05271 * 359.97379 * 10 9 7 31 31 H 1.08002 * 119.83655 * 180.29673 * 11 10 9 32 32 H 1.07996 * 119.79038 * 179.69216 * 12 11 10 33 33 H 0.96995 * 119.99518 * 323.92728 * 14 13 12 34 34 H 1.08993 * 109.16147 * 248.29222 * 18 17 15 35 35 H 1.08995 * 109.16254 * 7.48985 * 18 17 15 36 36 H 1.09010 * 109.04857 * 168.96415 * 19 18 17 37 37 H 1.08998 * 109.04965 * 287.85347 * 19 18 17 38 38 H 1.09007 * 109.90489 * 62.26790 * 20 19 18 39 39 H 1.09001 * 109.90683 * 183.32872 * 20 19 18 40 40 H 1.08998 * 110.30997 * 331.02794 * 23 21 20 41 41 H 1.09001 * 110.31219 * 93.10169 * 23 21 20 42 42 H 1.08995 * 110.08490 * 123.13050 * 24 23 21 43 43 H 1.09004 * 110.08667 * 244.70732 * 24 23 21 44 44 H 1.09000 * 110.75173 * 142.41532 * 25 24 23 45 45 H 1.08994 * 110.75066 * 265.76287 * 25 24 23 46 46 H 1.08000 * 120.16267 * 180.02562 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.3842 2.1074 -1.3948 5 1 1.4964 2.6200 0.8029 6 1 3.5886 1.4121 0.5919 7 6 2.0080 -1.2119 -0.0005 8 1 2.9625 -1.2840 -0.5006 9 6 1.4626 -2.3435 0.6486 10 6 0.4936 -2.1830 1.6572 11 6 -0.0371 -3.2895 2.2806 12 6 0.3860 -4.5608 1.9286 13 6 1.3479 -4.7344 0.9368 14 7 1.7675 -6.0235 0.5887 15 6 2.0632 -6.3125 -0.6940 16 8 2.0209 -5.4395 -1.5392 17 7 2.4058 -7.5692 -1.0400 18 6 2.3761 -8.6898 -0.0749 19 6 1.5715 -9.8657 -0.6243 20 6 1.9885 -10.2156 -2.0633 21 6 1.8046 -8.9676 -2.8992 22 1 0.7965 -8.5782 -2.7580 23 6 2.1132 -9.0578 -4.3870 24 6 2.6401 -7.6525 -4.7769 25 6 2.7078 -6.8302 -3.4593 26 6 2.8241 -7.9170 -2.3897 27 1 3.8293 -8.3382 -2.3781 28 6 1.8883 -3.6357 0.2945 29 1 -0.4850 0.8400 0.0004 30 1 0.1643 -1.1936 1.9384 31 1 -0.7839 -3.1657 3.0509 32 1 -0.0326 -5.4227 2.4268 33 1 1.8457 -6.7087 1.2707 34 1 3.3964 -9.0169 0.1250 35 1 1.9217 -8.3489 0.8553 36 1 1.7311 -10.7350 0.0136 37 1 0.5124 -9.6080 -0.6136 38 1 3.0339 -10.5241 -2.0821 39 1 1.3583 -11.0174 -2.4479 40 1 2.8779 -9.8127 -4.5697 41 1 1.2085 -9.2932 -4.9475 42 1 3.6332 -7.7344 -5.2184 43 1 1.9553 -7.1777 -5.4796 44 1 3.5840 -6.1819 -3.4532 45 1 1.7959 -6.2499 -3.3190 46 1 2.6340 -3.7694 -0.4751 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334980739.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:24 Heat of formation + Delta-G solvation = -24.845471 kcal Electronic energy + Delta-G solvation = -26552.712358 eV Core-core repulsion = 23019.745398 eV Total energy + Delta-G solvation = -3532.966960 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.01843 -40.18205 -38.72184 -36.61033 -36.05631 -34.74985 -33.84349 -31.78088 -30.16576 -29.85108 -28.50660 -27.22672 -25.90716 -23.39654 -22.86322 -22.59456 -22.04890 -20.93407 -20.56623 -19.53805 -18.46829 -17.51277 -17.13203 -16.67081 -16.55567 -16.30371 -15.97792 -15.47054 -15.31538 -15.17768 -14.74407 -14.51167 -14.44465 -14.31105 -13.99196 -13.63594 -13.50680 -13.29877 -13.00610 -12.83264 -12.60405 -12.42035 -12.23713 -12.19117 -11.82736 -11.80634 -11.76995 -11.60775 -11.53871 -11.46411 -11.26793 -11.17344 -10.76342 -10.40033 -9.54767 -9.44285 -8.78749 -8.67719 -6.32100 0.93060 1.04933 1.34374 1.44510 1.54775 1.62724 2.17077 2.20922 2.64449 2.90453 3.48351 3.70813 3.73829 3.77687 4.02752 4.11346 4.28015 4.37686 4.41849 4.42148 4.46927 4.56620 4.63624 4.66342 4.72694 4.90589 4.95715 4.98018 5.01875 5.07802 5.11975 5.12971 5.13394 5.19439 5.22203 5.28066 5.30485 5.36345 5.42058 5.54899 5.71013 5.78903 5.87636 6.05179 6.07448 6.15853 6.37275 6.66391 6.91764 6.99177 7.03771 7.64437 8.22591 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.018533 B = 0.003504 C = 0.003081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.449416 B = 7988.085459 C = 9084.453052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.804 5.804 2 C 0.051 3.949 3 Si 0.974 3.026 4 H -0.262 1.262 5 H -0.256 1.256 6 H -0.260 1.260 7 C -0.513 4.513 8 H 0.065 0.935 9 C 0.096 3.904 10 C -0.216 4.216 11 C -0.082 4.082 12 C -0.264 4.264 13 C 0.181 3.819 14 N -0.673 5.673 15 C 0.695 3.305 16 O -0.605 6.605 17 N -0.620 5.620 18 C 0.103 3.897 19 C -0.129 4.129 20 C -0.100 4.100 21 C -0.104 4.104 22 H 0.044 0.956 23 C -0.105 4.105 24 C -0.122 4.122 25 C -0.119 4.119 26 C 0.147 3.853 27 H 0.094 0.906 28 C -0.243 4.243 29 H 0.293 0.707 30 H 0.092 0.908 31 H 0.123 0.877 32 H 0.128 0.872 33 H 0.412 0.588 34 H 0.090 0.910 35 H 0.082 0.918 36 H 0.107 0.893 37 H 0.052 0.948 38 H 0.084 0.916 39 H 0.082 0.918 40 H 0.090 0.910 41 H 0.071 0.929 42 H 0.079 0.921 43 H 0.059 0.941 44 H 0.044 0.956 45 H 0.054 0.946 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.109 -21.209 -1.893 21.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.168 4.168 3 Si 0.793 3.207 4 H -0.186 1.186 5 H -0.180 1.180 6 H -0.183 1.183 7 C -0.540 4.540 8 H 0.083 0.917 9 C 0.093 3.907 10 C -0.236 4.236 11 C -0.100 4.100 12 C -0.285 4.285 13 C 0.087 3.913 14 N -0.323 5.323 15 C 0.397 3.603 16 O -0.484 6.484 17 N -0.358 5.358 18 C -0.018 4.018 19 C -0.167 4.167 20 C -0.137 4.137 21 C -0.124 4.124 22 H 0.063 0.937 23 C -0.143 4.143 24 C -0.160 4.160 25 C -0.157 4.157 26 C 0.043 3.957 27 H 0.112 0.888 28 C -0.265 4.265 29 H 0.104 0.896 30 H 0.110 0.890 31 H 0.141 0.859 32 H 0.146 0.854 33 H 0.252 0.748 34 H 0.108 0.892 35 H 0.100 0.900 36 H 0.126 0.874 37 H 0.070 0.930 38 H 0.102 0.898 39 H 0.101 0.899 40 H 0.109 0.891 41 H 0.090 0.910 42 H 0.097 0.903 43 H 0.078 0.922 44 H 0.063 0.937 45 H 0.073 0.927 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 3.855 -20.498 -2.521 21.009 hybrid contribution 0.100 1.081 0.128 1.093 sum 3.954 -19.417 -2.392 19.959 Atomic orbital electron populations 1.69954 1.09500 1.31307 1.31963 1.26750 0.95072 1.04507 0.90443 0.85353 0.79698 0.75988 0.79614 1.18648 1.18005 1.18330 1.19678 1.05600 0.95593 1.33175 0.91731 1.17769 0.90579 0.92003 0.90357 1.21036 1.04286 0.97517 1.00720 1.20751 0.98389 0.92174 0.98722 1.20355 1.04404 0.97299 1.06474 1.17328 0.94862 0.82602 0.96477 1.42564 1.70285 1.11560 1.07893 1.16168 0.78250 0.83180 0.82675 1.90948 1.59853 1.47697 1.49915 1.47216 1.70339 1.05477 1.12720 1.21979 1.02433 0.86243 0.91174 1.21918 0.99383 0.97759 0.97660 1.21322 1.03056 0.95919 0.93428 1.21873 0.98006 0.96682 0.95823 0.93691 1.21808 1.01974 0.96569 0.93925 1.22594 1.01944 0.95550 0.95937 1.22319 1.01754 0.96812 0.94823 1.21745 0.98322 0.95529 0.80088 0.88846 1.20915 1.08037 0.91944 1.05609 0.89606 0.88979 0.85862 0.85395 0.74845 0.89219 0.90003 0.87438 0.92961 0.89791 0.89941 0.89098 0.90977 0.90253 0.92248 0.93716 0.92745 0.89774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -44.40 11.75 21.82 0.26 -44.15 16 2 C 0.05 2.76 4.79 85.25 0.41 3.17 16 3 Si 0.97 40.38 29.66 68.60 2.03 42.42 16 4 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 5 H -0.26 -9.77 7.11 99.48 0.71 -9.07 16 6 H -0.26 -10.71 7.11 99.48 0.71 -10.01 16 7 C -0.51 -30.71 8.96 23.46 0.21 -30.50 16 8 H 0.06 3.88 8.02 -2.91 -0.02 3.86 16 9 C 0.10 5.72 5.57 -21.31 -0.12 5.60 16 10 C -0.22 -11.93 8.79 22.75 0.20 -11.73 16 11 C -0.08 -3.85 10.02 22.20 0.22 -3.63 16 12 C -0.26 -11.62 9.97 22.58 0.23 -11.39 16 13 C 0.18 8.66 6.27 38.09 0.24 8.89 16 14 N -0.67 -25.48 5.24 -317.33 -1.66 -27.14 16 15 C 0.69 27.67 8.17 179.06 1.46 29.14 16 16 O -0.61 -30.59 10.71 -3.97 -0.04 -30.63 16 17 N -0.62 -17.56 2.93 -811.26 -2.37 -19.93 16 18 C 0.10 1.81 6.34 86.01 0.54 2.35 16 19 C -0.13 -1.70 5.93 30.78 0.18 -1.52 16 20 C -0.10 -1.28 5.72 30.34 0.17 -1.10 16 21 C -0.10 -2.07 2.28 -10.92 -0.02 -2.09 16 22 H 0.04 1.16 8.09 -2.39 -0.02 1.14 16 23 C -0.10 -1.77 6.53 31.04 0.20 -1.57 16 24 C -0.12 -2.70 6.88 32.15 0.22 -2.48 16 25 C -0.12 -3.76 4.96 31.42 0.16 -3.60 16 26 C 0.15 3.75 2.99 45.84 0.14 3.89 16 27 H 0.09 2.01 8.07 -2.39 -0.02 1.99 16 28 C -0.24 -13.85 8.42 22.85 0.19 -13.66 16 29 H 0.29 14.34 8.30 -92.71 -0.77 13.57 16 30 H 0.09 5.20 6.50 -2.91 -0.02 5.18 16 31 H 0.12 4.91 8.06 -2.91 -0.02 4.88 16 32 H 0.13 4.55 8.06 -2.91 -0.02 4.52 16 33 H 0.41 11.69 6.53 -92.71 -0.61 11.08 16 34 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.08 1.32 5.90 -2.39 -0.01 1.31 16 36 H 0.11 0.80 8.14 -2.38 -0.02 0.78 16 37 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.08 0.83 8.06 -2.38 -0.02 0.81 16 39 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.09 1.10 8.11 -2.39 -0.02 1.08 16 41 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 44 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 45 H 0.05 2.23 6.21 -2.39 -0.01 2.21 16 46 H 0.08 5.14 6.33 -2.91 -0.02 5.12 16 Total: -1.00 -75.86 355.54 3.22 -72.63 By element: Atomic # 1 Polarization: 36.67 SS G_CDS: 0.38 Total: 37.05 kcal Atomic # 6 Polarization: -34.88 SS G_CDS: 4.63 Total: -30.25 kcal Atomic # 7 Polarization: -87.44 SS G_CDS: -3.78 Total: -91.22 kcal Atomic # 8 Polarization: -30.59 SS G_CDS: -0.04 Total: -30.63 kcal Atomic # 14 Polarization: 40.38 SS G_CDS: 2.03 Total: 42.42 kcal Total: -75.86 3.22 -72.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334980739.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.786 kcal (2) G-P(sol) polarization free energy of solvation -75.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds