Wall clock time and date at job start Tue Mar 31 2020 10:56:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30833 * 1 3 3 Si 1.86803 * 119.99821 * 2 1 4 4 H 1.48500 * 109.46808 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47552 * 300.00264 * 3 2 1 6 6 H 1.48501 * 109.47075 * 60.00484 * 3 2 1 7 7 C 1.39928 * 120.00278 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00302 * 190.08002 * 7 2 1 9 9 C 1.41416 * 119.99664 * 10.07907 * 7 2 1 10 10 C 1.40773 * 120.20609 * 209.01751 * 9 7 2 11 11 C 1.37641 * 119.88184 * 179.97438 * 10 9 7 12 12 C 1.38541 * 120.31992 * 359.72535 * 11 10 9 13 13 C 1.39242 * 120.42847 * 0.55161 * 12 11 10 14 14 N 1.39947 * 119.94890 * 179.72163 * 13 12 11 15 15 C 1.34782 * 119.99742 * 323.81631 * 14 13 12 16 16 O 1.21585 * 120.00538 * 4.62082 * 15 14 13 17 17 N 1.34784 * 119.99604 * 184.62466 * 15 14 13 18 18 C 1.45175 * 116.79205 * 174.79730 * 17 15 14 19 19 C 1.52946 * 110.67079 * 151.62920 * 18 17 15 20 20 C 1.53294 * 108.06078 * 50.90019 * 19 18 17 21 21 C 1.52547 * 108.77047 * 291.97815 * 20 19 18 22 22 H 1.08999 * 110.05800 * 295.60364 * 21 20 19 23 23 C 1.53873 * 109.44909 * 174.79187 * 21 20 19 24 24 C 1.53666 * 106.94378 * 257.82631 * 23 21 20 25 25 C 1.53772 * 107.26371 * 359.88530 * 24 23 21 26 26 C 1.44204 * 116.79550 * 354.77149 * 17 15 14 27 27 H 1.09002 * 109.06245 * 321.06440 * 26 17 15 28 28 C 1.38279 * 120.10417 * 359.45156 * 13 12 11 29 29 H 0.97000 * 119.99663 * 359.97438 * 1 2 3 30 30 H 1.07997 * 120.06441 * 359.95800 * 10 9 7 31 31 H 1.08005 * 119.83995 * 179.97438 * 11 10 9 32 32 H 1.08001 * 119.78211 * 180.29547 * 12 11 10 33 33 H 0.96997 * 120.00690 * 143.81126 * 14 13 12 34 34 H 1.08997 * 109.23776 * 271.93931 * 18 17 15 35 35 H 1.08998 * 109.23556 * 31.35869 * 18 17 15 36 36 H 1.09007 * 109.73904 * 170.53843 * 19 18 17 37 37 H 1.08998 * 109.74258 * 291.20192 * 19 18 17 38 38 H 1.09005 * 109.58402 * 172.20105 * 20 19 18 39 39 H 1.08999 * 109.60974 * 51.77402 * 20 19 18 40 40 H 1.08998 * 109.96856 * 138.45543 * 23 21 20 41 41 H 1.08999 * 109.96374 * 17.19901 * 23 21 20 42 42 H 1.09003 * 109.90583 * 119.34196 * 24 23 21 43 43 H 1.08994 * 109.91373 * 240.41977 * 24 23 21 44 44 H 1.08994 * 110.21765 * 101.11301 * 25 24 23 45 45 H 1.09004 * 110.21242 * 223.03227 * 25 24 23 46 46 H 1.07999 * 120.16013 * 180.29570 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.7023 1.3464 -0.0006 5 1 1.8835 2.3966 -1.2124 6 1 1.8836 2.3964 1.2126 7 6 2.0080 -1.2118 -0.0005 8 1 3.0755 -1.2191 0.1631 9 6 1.3173 -2.4269 -0.2154 10 6 1.7962 -3.6235 0.3508 11 6 1.1183 -4.8023 0.1378 12 6 -0.0369 -4.8165 -0.6269 13 6 -0.5190 -3.6417 -1.1979 14 7 -1.6837 -3.6686 -1.9734 15 6 -1.9416 -4.7282 -2.7654 16 8 -1.2070 -5.6968 -2.7435 17 7 -3.0140 -4.7141 -3.5818 18 6 -3.1616 -5.8388 -4.4877 19 6 -4.6365 -6.0811 -4.8119 20 6 -5.2503 -4.7487 -5.2569 21 6 -5.2934 -3.8041 -4.0598 22 1 -5.9615 -4.2000 -3.2950 23 6 -5.7852 -2.4196 -4.5171 24 6 -4.5464 -1.5166 -4.6226 25 6 -3.3275 -2.3659 -4.2256 26 6 -3.9020 -3.5835 -3.4690 27 1 -4.0013 -3.3122 -2.4180 28 6 0.1480 -2.4475 -0.9954 29 1 -0.4850 0.8401 0.0004 30 1 2.6939 -3.6167 0.9511 31 1 1.4865 -5.7200 0.5722 32 1 -0.5645 -5.7456 -0.7845 33 1 -2.3054 -2.9247 -1.9409 34 1 -2.6206 -5.6300 -5.4107 35 1 -2.7454 -6.7321 -4.0220 36 1 -4.7215 -6.8123 -5.6158 37 1 -5.1531 -6.4475 -3.9248 38 1 -6.2621 -4.9176 -5.6256 39 1 -4.6400 -4.3103 -6.0464 40 1 -6.4820 -2.0115 -3.7849 41 1 -6.2713 -2.4998 -5.4895 42 1 -4.4329 -1.1603 -5.6465 43 1 -4.6455 -0.6696 -3.9439 44 1 -2.7914 -2.6947 -5.1158 45 1 -2.6651 -1.7935 -3.5761 46 1 -0.2279 -1.5349 -1.4339 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334980740.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:30 Heat of formation + Delta-G solvation = -15.441539 kcal Electronic energy + Delta-G solvation = -26786.454022 eV Core-core repulsion = 23253.894847 eV Total energy + Delta-G solvation = -3532.559175 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.98252 -38.79368 -37.21736 -35.19605 -34.18310 -33.60915 -32.76817 -29.47069 -29.37887 -28.11182 -28.03593 -25.19442 -24.82156 -22.50514 -21.47828 -21.14742 -20.38006 -19.94224 -18.69637 -17.95579 -17.29387 -15.99839 -15.88626 -15.45231 -15.26037 -14.70623 -14.63268 -14.40136 -14.25495 -13.79169 -13.34972 -13.27605 -13.12761 -12.74729 -12.73144 -12.29143 -12.16884 -11.68370 -11.57004 -11.41899 -11.28659 -11.14572 -11.08582 -10.83451 -10.75509 -10.68139 -10.62496 -10.52450 -10.40176 -9.94547 -9.67486 -9.43838 -9.17929 -8.90746 -8.42105 -7.26637 -6.92929 -6.59098 -4.33571 2.75409 2.92776 3.01092 3.09991 3.15735 3.26695 3.68825 3.98356 4.20757 4.34569 4.39753 4.54702 4.73633 4.80114 4.90085 5.01984 5.16985 5.23900 5.35186 5.35531 5.44223 5.55482 5.67602 5.69654 5.71932 5.77391 5.82148 5.91048 5.97231 5.98758 6.07418 6.19444 6.25001 6.32849 6.72395 6.76750 6.79267 6.97281 7.05152 7.12898 7.27597 7.39644 7.70837 7.88097 8.03156 8.10810 8.31972 8.48461 8.66851 8.95513 8.97285 9.10902 10.28824 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.015154 B = 0.004084 C = 0.003323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.276762 B = 6854.552283 C = 8425.209788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.074 3.926 3 Si 0.908 3.092 4 H -0.262 1.262 5 H -0.274 1.274 6 H -0.276 1.276 7 C -0.464 4.464 8 H 0.077 0.923 9 C 0.118 3.882 10 C -0.224 4.224 11 C -0.091 4.091 12 C -0.219 4.219 13 C 0.156 3.844 14 N -0.677 5.677 15 C 0.694 3.306 16 O -0.574 6.574 17 N -0.615 5.615 18 C 0.135 3.865 19 C -0.132 4.132 20 C -0.111 4.111 21 C -0.089 4.089 22 H 0.077 0.923 23 C -0.117 4.117 24 C -0.121 4.121 25 C -0.145 4.145 26 C 0.145 3.855 27 H 0.076 0.924 28 C -0.175 4.175 29 H 0.276 0.724 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.107 0.893 33 H 0.398 0.602 34 H 0.053 0.947 35 H 0.086 0.914 36 H 0.077 0.923 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.067 0.933 40 H 0.066 0.934 41 H 0.068 0.932 42 H 0.064 0.936 43 H 0.067 0.933 44 H 0.070 0.930 45 H 0.074 0.926 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.837 -3.044 -10.027 17.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C -0.141 4.141 3 Si 0.733 3.267 4 H -0.186 1.186 5 H -0.200 1.200 6 H -0.201 1.201 7 C -0.495 4.495 8 H 0.095 0.905 9 C 0.116 3.884 10 C -0.244 4.244 11 C -0.110 4.110 12 C -0.240 4.240 13 C 0.064 3.936 14 N -0.325 5.325 15 C 0.396 3.604 16 O -0.450 6.450 17 N -0.352 5.352 18 C 0.012 3.988 19 C -0.170 4.170 20 C -0.149 4.149 21 C -0.108 4.108 22 H 0.096 0.904 23 C -0.155 4.155 24 C -0.159 4.159 25 C -0.185 4.185 26 C 0.040 3.960 27 H 0.094 0.906 28 C -0.197 4.197 29 H 0.087 0.913 30 H 0.111 0.889 31 H 0.109 0.891 32 H 0.125 0.875 33 H 0.235 0.765 34 H 0.072 0.928 35 H 0.105 0.895 36 H 0.095 0.905 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.083 0.917 43 H 0.086 0.914 44 H 0.089 0.911 45 H 0.093 0.907 46 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -13.546 -3.602 -10.060 17.254 hybrid contribution -0.016 1.311 0.073 1.313 sum -13.563 -2.291 -9.988 16.999 Atomic orbital electron populations 1.69798 1.07343 1.28502 1.38052 1.25827 0.94817 1.00998 0.92430 0.86260 0.80882 0.81161 0.78355 1.18551 1.19960 1.20103 1.19545 0.95732 0.90321 1.43914 0.90510 1.17359 0.90919 0.92154 0.88010 1.21090 1.02984 0.93509 1.06795 1.20449 0.95523 0.96485 0.98583 1.20499 1.00904 0.96769 1.05848 1.17484 0.86818 0.95321 0.94023 1.42873 1.24233 1.20734 1.44646 1.16098 0.81574 0.83720 0.79024 1.90891 1.49644 1.33613 1.70900 1.46161 1.25473 1.22924 1.40674 1.20934 0.95961 0.89240 0.92675 1.21879 0.95639 0.97636 1.01818 1.21531 1.00991 0.95023 0.97316 1.21504 0.95122 0.96301 0.97918 0.90429 1.22097 0.97847 0.94035 1.01491 1.21924 0.94004 0.98252 1.01698 1.22813 0.98114 0.96277 1.01251 1.20890 0.89851 0.85500 0.99740 0.90637 1.21114 0.98955 0.95289 1.04360 0.91342 0.88904 0.89093 0.87504 0.76540 0.92839 0.89527 0.90451 0.91331 0.91541 0.91425 0.91490 0.91357 0.91726 0.91427 0.91097 0.90706 0.85876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.60 10.82 55.55 0.60 -20.00 16 2 C 0.07 1.87 5.26 -17.34 -0.09 1.77 16 3 Si 0.91 18.81 29.57 -169.99 -5.03 13.78 16 4 H -0.26 -5.40 7.11 56.52 0.40 -4.99 16 5 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 6 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 7 C -0.46 -12.42 9.06 -37.74 -0.34 -12.76 16 8 H 0.08 1.99 7.87 -52.49 -0.41 1.58 16 9 C 0.12 3.20 5.55 -106.85 -0.59 2.61 16 10 C -0.22 -5.68 9.79 -38.84 -0.38 -6.06 16 11 C -0.09 -2.20 10.02 -39.69 -0.40 -2.60 16 12 C -0.22 -5.40 8.70 -39.10 -0.34 -5.74 16 13 C 0.16 3.78 6.27 -83.76 -0.53 3.26 16 14 N -0.68 -13.63 4.98 -14.27 -0.07 -13.70 16 15 C 0.69 13.51 7.82 -86.91 -0.68 12.83 16 16 O -0.57 -13.15 13.07 5.29 0.07 -13.08 16 17 N -0.62 -9.07 2.84 -173.81 -0.49 -9.56 16 18 C 0.13 1.72 6.04 -4.78 -0.03 1.69 16 19 C -0.13 -1.21 6.12 -26.61 -0.16 -1.37 16 20 C -0.11 -0.94 4.95 -26.81 -0.13 -1.07 16 21 C -0.09 -0.83 2.89 -90.52 -0.26 -1.09 16 22 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 23 C -0.12 -0.95 6.39 -25.93 -0.17 -1.11 16 24 C -0.12 -1.13 6.79 -25.98 -0.18 -1.31 16 25 C -0.15 -1.74 6.03 -25.58 -0.15 -1.89 16 26 C 0.15 1.77 2.39 -68.52 -0.16 1.60 16 27 H 0.08 0.96 6.69 -51.93 -0.35 0.62 16 28 C -0.18 -4.56 8.57 -38.69 -0.33 -4.89 16 29 H 0.28 6.38 8.30 -40.82 -0.34 6.04 16 30 H 0.09 2.20 8.06 -52.49 -0.42 1.78 16 31 H 0.09 1.93 8.06 -52.48 -0.42 1.51 16 32 H 0.11 2.64 6.29 -52.49 -0.33 2.31 16 33 H 0.40 7.07 5.40 -40.82 -0.22 6.85 16 34 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.09 1.25 7.10 -51.93 -0.37 0.88 16 36 H 0.08 0.58 8.14 -51.92 -0.42 0.15 16 37 H 0.07 0.65 8.12 -51.93 -0.42 0.22 16 38 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.07 0.60 8.11 -51.93 -0.42 0.18 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.07 0.49 7.72 -51.93 -0.40 0.08 16 42 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 44 H 0.07 0.91 8.13 -51.93 -0.42 0.48 16 45 H 0.07 1.01 7.12 -51.93 -0.37 0.64 16 46 H 0.12 3.24 6.21 -52.49 -0.33 2.92 16 LS Contribution 355.40 15.07 5.36 5.36 Total: -1.00 -30.02 355.40 -11.47 -41.50 By element: Atomic # 1 Polarization: 18.83 SS G_CDS: -6.98 Total: 11.85 kcal Atomic # 6 Polarization: -11.21 SS G_CDS: -4.93 Total: -16.14 kcal Atomic # 7 Polarization: -43.30 SS G_CDS: 0.04 Total: -43.26 kcal Atomic # 8 Polarization: -13.15 SS G_CDS: 0.07 Total: -13.08 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -5.03 Total: 13.78 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.02 -11.47 -41.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334980740.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.056 kcal (2) G-P(sol) polarization free energy of solvation -30.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds