Wall clock time and date at job start Tue Mar 31 2020 10:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48501 * 109.46890 * 264.90150 * 3 2 1 5 5 H 1.48499 * 109.47446 * 24.89921 * 3 2 1 6 6 H 1.48502 * 109.47160 * 144.90301 * 3 2 1 7 7 C 1.37871 * 120.00184 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00114 * 4.93981 * 7 2 1 9 9 C 1.50701 * 120.00140 * 184.94603 * 7 2 1 10 10 C 1.53121 * 109.52104 * 215.00068 * 9 7 2 11 11 C 1.53043 * 109.27658 * 182.43645 * 10 9 7 12 12 N 1.46840 * 109.51923 * 59.18398 * 11 10 9 13 13 C 1.46907 * 110.99787 * 174.15840 * 12 11 10 14 14 H 1.09001 * 110.53549 * 52.38589 * 13 12 11 15 15 C 1.54630 * 110.48594 * 174.99629 * 13 12 11 16 16 C 1.54482 * 101.76404 * 143.47524 * 15 13 12 17 17 N 1.46763 * 105.47320 * 334.58836 * 16 15 13 18 18 C 1.39922 * 124.34637 * 197.01674 * 17 16 15 19 19 C 1.38871 * 120.07297 * 354.21614 * 18 17 16 20 20 C 1.38110 * 119.93209 * 179.72526 * 19 18 17 21 21 C 1.38289 * 120.06810 * 0.27475 * 20 19 18 22 22 C 1.38281 * 120.14162 * 359.95317 * 21 20 19 23 23 C 1.38113 * 120.06917 * 0.04891 * 22 21 20 24 24 C 1.34424 * 111.30042 * 17.27649 * 17 16 15 25 25 O 1.21289 * 124.94013 * 179.30212 * 24 17 16 26 26 C 1.46848 * 111.19912 * 298.25408 * 12 11 10 27 27 C 1.53035 * 109.52293 * 61.74648 * 26 12 11 28 28 H 0.97002 * 120.00340 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.57117 * 335.15354 * 9 7 2 30 30 H 1.09005 * 109.50205 * 62.49789 * 10 9 7 31 31 H 1.08999 * 109.53471 * 302.40150 * 10 9 7 32 32 H 1.08992 * 109.45980 * 299.16407 * 11 10 9 33 33 H 1.09003 * 109.44803 * 179.19066 * 11 10 9 34 34 H 1.08997 * 110.97088 * 25.35799 * 15 13 12 35 35 H 1.09006 * 110.96979 * 261.59647 * 15 13 12 36 36 H 1.08989 * 110.24628 * 215.58043 * 16 15 13 37 37 H 1.09005 * 110.31382 * 93.62040 * 16 15 13 38 38 H 1.07999 * 120.03173 * 359.97438 * 19 18 17 39 39 H 1.07995 * 119.96937 * 180.24866 * 20 19 18 40 40 H 1.07997 * 119.92950 * 179.97438 * 21 20 19 41 41 H 1.07998 * 119.96749 * 180.02562 * 22 21 20 42 42 H 1.07999 * 120.03596 * 180.02562 * 23 22 21 43 43 H 1.08994 * 109.46468 * 181.76547 * 26 12 11 44 44 H 1.09007 * 109.45990 * 301.72953 * 26 12 11 45 45 H 1.09000 * 109.50481 * 180.88162 * 27 26 12 46 46 H 1.09000 * 109.53669 * 60.78407 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6043 1.9842 -1.3946 5 1 1.3968 2.6814 0.5894 6 1 3.4887 1.4738 0.8050 7 6 2.0046 -1.1940 -0.0005 8 1 1.4676 -2.1275 -0.0815 9 6 3.5074 -1.1964 0.1120 10 6 4.0813 -2.3423 -0.7260 11 6 5.6023 -2.3773 -0.5595 12 7 5.9365 -2.5684 0.8575 13 6 7.3836 -2.7455 1.0378 14 1 7.9309 -1.9344 0.5574 15 6 7.7365 -2.8202 2.5415 16 6 8.8759 -3.8634 2.5462 17 7 8.6560 -4.6886 1.3526 18 6 9.2357 -5.9449 1.1438 19 6 10.1742 -6.4362 2.0418 20 6 10.7404 -7.6790 1.8358 21 6 10.3778 -8.4315 0.7337 22 6 9.4471 -7.9431 -0.1648 23 6 8.8773 -6.7010 0.0355 24 6 7.8307 -4.0801 0.4834 25 8 7.4919 -4.5359 -0.5883 26 6 5.4364 -1.4562 1.6756 27 6 3.9106 -1.3936 1.5759 28 1 -0.4851 0.8400 0.0004 29 1 3.9022 -0.2472 -0.2501 30 1 3.8337 -2.1849 -1.7758 31 1 3.6565 -3.2881 -0.3897 32 1 6.0276 -1.4368 -0.9095 33 1 6.0124 -3.2012 -1.1437 34 1 6.8850 -3.1699 3.1251 35 1 8.0889 -1.8559 2.9079 36 1 8.8212 -4.4776 3.4449 37 1 9.8443 -3.3663 2.4879 38 1 10.4581 -5.8487 2.9024 39 1 11.4673 -8.0633 2.5359 40 1 10.8222 -9.4029 0.5747 41 1 9.1657 -8.5334 -1.0243 42 1 8.1502 -6.3203 -0.6664 43 1 5.7264 -1.6107 2.7149 44 1 5.8627 -0.5199 1.3152 45 1 3.5410 -0.5583 2.1708 46 1 3.4825 -2.3238 1.9493 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336507434.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:44:44 Heat of formation + Delta-G solvation = -15.900445 kcal Electronic energy + Delta-G solvation = -26350.897144 eV Core-core repulsion = 22818.318069 eV Total energy + Delta-G solvation = -3532.579075 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.28225 -40.08874 -39.09943 -37.71253 -35.80265 -34.10226 -32.49356 -31.86511 -31.66419 -29.70185 -28.76551 -26.79689 -24.69473 -23.96540 -23.48088 -23.12674 -21.61270 -20.65820 -20.50378 -18.97581 -18.70152 -18.10572 -17.34561 -16.95977 -16.47359 -16.01602 -15.75697 -15.60771 -15.16379 -14.95293 -14.85909 -14.76483 -14.59217 -14.36121 -14.31275 -14.04400 -13.86975 -13.51027 -13.35100 -13.06786 -12.78866 -12.60836 -12.56228 -12.39604 -12.16101 -12.05247 -11.98947 -11.76263 -11.42913 -11.15449 -11.04351 -10.86928 -10.66365 -10.41953 -9.89620 -9.29905 -8.90683 -8.27250 -6.30571 0.27971 0.45525 1.34814 1.36234 1.44875 1.47909 1.77363 2.36292 2.89044 2.93707 3.08067 3.13969 3.49831 3.88842 4.00150 4.04712 4.09190 4.10701 4.18617 4.31685 4.32856 4.41890 4.44389 4.52027 4.54175 4.58840 4.64635 4.73070 4.79637 4.79937 4.91613 4.96208 5.02542 5.09176 5.14236 5.21541 5.25513 5.30953 5.47327 5.56032 5.61704 5.64460 5.68301 5.77722 6.01470 6.09105 6.12034 6.19151 6.36398 6.76186 6.97279 7.34434 8.90495 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.030098 B = 0.002945 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.068547 B = 9503.926718 C = 9997.179624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C 0.006 3.994 3 Si 0.948 3.052 4 H -0.272 1.272 5 H -0.288 1.288 6 H -0.237 1.237 7 C -0.514 4.514 8 H 0.022 0.978 9 C 0.013 3.987 10 C -0.094 4.094 11 C 0.056 3.944 12 N -0.530 5.530 13 C 0.050 3.950 14 H 0.093 0.907 15 C -0.118 4.118 16 C 0.096 3.904 17 N -0.559 5.559 18 C 0.147 3.853 19 C -0.156 4.156 20 C -0.091 4.091 21 C -0.150 4.150 22 C -0.103 4.103 23 C -0.191 4.191 24 C 0.516 3.484 25 O -0.540 6.540 26 C 0.062 3.938 27 C -0.104 4.104 28 H 0.265 0.735 29 H 0.030 0.970 30 H 0.048 0.952 31 H 0.038 0.962 32 H 0.033 0.967 33 H 0.080 0.920 34 H 0.094 0.906 35 H 0.131 0.869 36 H 0.110 0.890 37 H 0.109 0.891 38 H 0.154 0.846 39 H 0.159 0.841 40 H 0.147 0.853 41 H 0.132 0.868 42 H 0.122 0.878 43 H 0.106 0.894 44 H 0.038 0.962 45 H 0.053 0.947 46 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.847 -9.255 9.686 31.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.190 4.190 3 Si 0.772 3.228 4 H -0.197 1.197 5 H -0.214 1.214 6 H -0.160 1.160 7 C -0.552 4.552 8 H 0.040 0.960 9 C -0.006 4.006 10 C -0.132 4.132 11 C -0.071 4.071 12 N -0.256 5.256 13 C -0.062 4.062 14 H 0.110 0.890 15 C -0.156 4.156 16 C -0.025 4.025 17 N -0.282 5.282 18 C 0.054 3.946 19 C -0.176 4.176 20 C -0.110 4.110 21 C -0.169 4.169 22 C -0.122 4.122 23 C -0.211 4.211 24 C 0.305 3.695 25 O -0.417 6.417 26 C -0.064 4.064 27 C -0.142 4.142 28 H 0.073 0.927 29 H 0.048 0.952 30 H 0.067 0.933 31 H 0.057 0.943 32 H 0.051 0.949 33 H 0.098 0.902 34 H 0.113 0.887 35 H 0.149 0.851 36 H 0.128 0.872 37 H 0.127 0.873 38 H 0.172 0.828 39 H 0.176 0.824 40 H 0.164 0.836 41 H 0.150 0.850 42 H 0.140 0.860 43 H 0.124 0.876 44 H 0.056 0.944 45 H 0.072 0.928 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 28.271 -9.783 9.296 31.327 hybrid contribution -0.624 1.229 -1.077 1.749 sum 27.647 -8.554 8.219 30.085 Atomic orbital electron populations 1.70086 1.08432 1.28012 1.53033 1.26031 0.95501 1.03256 0.94233 0.85728 0.79606 0.78194 0.79319 1.19749 1.21427 1.15962 1.21308 0.91993 0.92668 1.49218 0.95982 1.19185 0.93266 0.94624 0.93555 1.21463 0.93781 0.98796 0.99135 1.22227 0.96023 1.00133 0.88734 1.61806 1.10743 1.44536 1.08529 1.22374 0.90079 0.94085 0.99640 0.89002 1.22901 0.98838 1.01792 0.92062 1.22605 1.00499 0.92480 0.86878 1.45900 1.44537 1.16349 1.21403 1.18081 0.95490 0.84740 0.96336 1.21101 0.97801 0.98366 1.00337 1.21377 0.98946 0.93134 0.97501 1.21470 0.98682 1.01473 0.95267 1.21260 0.96482 0.94485 0.99972 1.21630 1.03613 0.96608 0.99278 1.21359 0.77245 0.87532 0.83322 1.90550 1.57394 1.70166 1.23625 1.22248 0.94909 0.90761 0.98521 1.21694 0.94168 1.00443 0.97895 0.92650 0.95206 0.93330 0.94290 0.94863 0.90158 0.88715 0.85130 0.87200 0.87312 0.82815 0.82366 0.83558 0.85036 0.85986 0.87625 0.94398 0.92799 0.93606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.05 13.96 21.45 0.30 -60.75 16 2 C 0.01 0.34 5.47 84.65 0.46 0.81 16 3 Si 0.95 44.31 27.00 68.60 1.85 46.16 16 4 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 5 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 6 H -0.24 -9.85 6.81 99.48 0.68 -9.17 16 7 C -0.51 -30.20 8.87 25.60 0.23 -29.97 16 8 H 0.02 1.46 8.06 -2.91 -0.02 1.44 16 9 C 0.01 0.60 1.83 -11.46 -0.02 0.57 16 10 C -0.09 -4.11 5.36 30.65 0.16 -3.95 16 11 C 0.06 2.05 5.34 86.33 0.46 2.51 16 12 N -0.53 -16.47 4.51 -871.16 -3.93 -20.40 16 13 C 0.05 1.15 2.67 44.91 0.12 1.27 16 14 H 0.09 1.91 8.13 -2.39 -0.02 1.89 16 15 C -0.12 -1.56 5.37 31.65 0.17 -1.39 16 16 C 0.10 1.07 6.26 86.83 0.54 1.61 16 17 N -0.56 -12.11 3.14 -627.70 -1.97 -14.08 16 18 C 0.15 3.35 6.60 38.15 0.25 3.60 16 19 C -0.16 -2.39 9.41 22.39 0.21 -2.18 16 20 C -0.09 -1.20 10.04 22.25 0.22 -0.98 16 21 C -0.15 -2.32 10.04 22.29 0.22 -2.10 16 22 C -0.10 -2.17 10.04 22.25 0.22 -1.95 16 23 C -0.19 -5.13 9.28 22.39 0.21 -4.92 16 24 C 0.52 14.68 7.52 87.90 0.66 15.34 16 25 O -0.54 -19.82 12.40 -3.06 -0.04 -19.86 16 26 C 0.06 1.83 5.15 86.32 0.44 2.28 16 27 C -0.10 -4.16 5.36 30.65 0.16 -4.00 16 28 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16 29 H 0.03 1.38 5.29 -2.39 -0.01 1.36 16 30 H 0.05 2.16 8.14 -2.38 -0.02 2.14 16 31 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.08 3.09 5.63 -2.39 -0.01 3.07 16 34 H 0.09 1.42 7.30 -2.39 -0.02 1.40 16 35 H 0.13 0.86 8.14 -2.38 -0.02 0.84 16 36 H 0.11 0.79 7.70 -2.39 -0.02 0.77 16 37 H 0.11 0.64 8.14 -2.38 -0.02 0.62 16 38 H 0.15 1.35 7.02 -2.91 -0.02 1.33 16 39 H 0.16 1.00 8.06 -2.91 -0.02 0.97 16 40 H 0.15 1.45 8.06 -2.91 -0.02 1.42 16 41 H 0.13 2.37 8.06 -2.91 -0.02 2.35 16 42 H 0.12 4.08 5.26 -2.91 -0.02 4.06 16 43 H 0.11 2.32 6.23 -2.39 -0.01 2.31 16 44 H 0.04 1.06 8.14 -2.38 -0.02 1.04 16 45 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 46 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -78.63 354.87 1.89 -76.74 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: 0.94 Total: 15.62 kcal Atomic # 6 Polarization: -28.16 SS G_CDS: 4.74 Total: -23.42 kcal Atomic # 7 Polarization: -89.63 SS G_CDS: -5.60 Total: -95.23 kcal Atomic # 8 Polarization: -19.82 SS G_CDS: -0.04 Total: -19.86 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 1.85 Total: 46.16 kcal Total: -78.63 1.89 -76.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336507434.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.840 kcal (2) G-P(sol) polarization free energy of solvation -78.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds