Wall clock time and date at job start Tue Mar 31 2020 11:33:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38268 * 120.08767 * 2 1 4 4 C 1.37956 * 119.71614 * 180.24298 * 3 2 1 5 5 C 1.38837 * 120.50611 * 359.90795 * 4 3 2 6 6 C 1.37673 * 119.84565 * 359.60938 * 5 4 3 7 7 C 1.37908 * 120.08536 * 179.97438 * 2 1 3 8 8 C 1.50598 * 122.85217 * 181.44707 * 6 5 4 9 9 C 1.52782 * 110.86279 * 339.79478 * 8 6 5 10 10 N 1.47231 * 107.91601 * 47.47407 * 9 8 6 11 11 C 1.34771 * 121.33527 * 115.77013 * 10 9 8 12 12 O 1.21587 * 119.99836 * 354.94032 * 11 10 9 13 13 N 1.34773 * 119.99879 * 174.93246 * 11 10 9 14 14 C 1.46505 * 120.00118 * 184.98578 * 13 11 10 15 15 C 1.52991 * 109.47343 * 184.94640 * 14 13 11 16 16 C 1.50702 * 115.55387 * 304.42014 * 15 14 13 17 17 H 1.07997 * 120.00495 * 143.07929 * 16 15 14 18 18 C 1.37884 * 119.99460 * 323.07861 * 16 15 14 19 19 N 1.31518 * 119.99737 * 168.83765 * 18 16 15 20 20 Si 1.86795 * 120.00452 * 348.83649 * 18 16 15 21 21 H 1.48500 * 109.47136 * 95.54902 * 20 18 16 22 22 H 1.48502 * 109.47200 * 215.55304 * 20 18 16 23 23 H 1.48505 * 109.46986 * 335.55274 * 20 18 16 24 24 C 1.53004 * 117.49812 * 158.75296 * 15 14 13 25 25 C 1.53006 * 117.50111 * 90.09204 * 15 14 13 26 26 C 1.46681 * 117.33024 * 295.79185 * 10 9 8 27 27 H 1.09000 * 109.47541 * 89.99847 * 1 2 3 28 28 H 1.09003 * 109.47264 * 209.99561 * 1 2 3 29 29 H 1.08997 * 109.47273 * 329.99385 * 1 2 3 30 30 H 1.08005 * 120.13848 * 0.27198 * 3 2 1 31 31 H 1.07998 * 119.74409 * 179.97438 * 4 3 2 32 32 H 1.07998 * 119.70935 * 0.05018 * 7 2 1 33 33 H 1.09004 * 109.19461 * 219.44174 * 8 6 5 34 34 H 1.09004 * 109.20461 * 100.16200 * 8 6 5 35 35 H 1.08992 * 109.77152 * 287.86696 * 9 8 6 36 36 H 1.09003 * 109.77007 * 167.06977 * 9 8 6 37 37 H 0.96997 * 120.00596 * 4.98770 * 13 11 10 38 38 H 1.08993 * 109.47063 * 304.95434 * 14 13 11 39 39 H 1.09005 * 109.46719 * 64.94959 * 14 13 11 40 40 H 0.96992 * 119.99972 * 180.02562 * 19 18 16 41 41 H 1.08995 * 117.50009 * 359.97438 * 24 15 14 42 42 H 1.09003 * 117.49941 * 145.02542 * 24 15 14 43 43 H 1.08996 * 117.49654 * 214.98244 * 25 15 14 44 44 H 1.09000 * 117.49346 * 359.97038 * 25 15 14 45 45 H 1.09001 * 109.43712 * 164.47522 * 26 10 9 46 46 H 1.08998 * 109.43923 * 284.34897 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2001 1.1964 0.0000 4 6 3.5797 1.1874 -0.0051 5 6 4.2767 -0.0133 -0.0083 6 6 3.5880 -1.2053 0.0018 7 6 2.1983 -1.1933 0.0005 8 6 4.2746 -2.5453 0.0311 9 6 5.7211 -2.4261 -0.4462 10 7 6.3349 -1.2832 0.2500 11 6 7.3620 -1.4533 1.1058 12 8 7.7400 -2.5742 1.3867 13 7 7.9703 -0.3808 1.6501 14 6 9.1547 -0.5600 2.4935 15 6 9.5723 0.7899 3.0799 16 6 9.8250 1.8847 2.0756 17 1 9.5423 2.9019 2.3028 18 6 10.4173 1.5876 0.8664 19 7 10.4403 2.4868 -0.0931 20 14 11.1871 -0.0920 0.5910 21 1 10.2083 -0.9801 -0.0862 22 1 12.3964 0.0511 -0.2589 23 1 11.5685 -0.6822 1.8992 24 6 10.4382 0.7748 4.3412 25 6 8.9680 1.1926 4.4267 26 6 5.7835 0.0480 -0.0248 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3633 0.8899 0.5139 30 1 1.6638 2.1338 0.0044 31 1 4.1215 2.1216 -0.0055 32 1 1.6550 -2.1266 0.0001 33 1 3.7386 -3.2370 -0.6189 34 1 4.2640 -2.9315 1.0504 35 1 5.7413 -2.2563 -1.5226 36 1 6.2651 -3.3395 -0.2059 37 1 7.6240 0.5098 1.4834 38 1 8.9228 -1.2518 3.3032 39 1 9.9704 -0.9634 1.8934 40 1 10.8566 2.2777 -0.9438 41 1 10.7100 -0.1969 4.7535 42 1 11.1903 1.5570 4.4448 43 1 8.7536 2.2493 4.5862 44 1 8.2726 0.4958 4.8946 45 1 6.1264 0.7472 0.7378 46 1 6.1221 0.3858 -1.0043 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336530311.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:33:24 Heat of formation + Delta-G solvation = 15.266713 kcal Electronic energy + Delta-G solvation = -26569.756406 eV Core-core repulsion = 23038.528841 eV Total energy + Delta-G solvation = -3531.227565 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.73164 -40.42852 -38.88710 -37.28689 -35.28638 -34.36094 -33.77988 -33.58056 -30.48436 -29.32266 -28.36708 -26.99307 -25.39046 -24.56714 -23.20286 -23.08217 -21.64195 -21.22366 -20.11007 -19.21515 -18.30488 -17.77622 -17.53219 -16.88889 -16.42085 -16.21620 -15.83728 -15.70784 -15.53365 -15.16888 -15.05904 -14.80940 -14.49183 -14.20952 -14.14962 -13.91200 -13.82046 -13.51382 -13.31715 -13.03782 -12.93703 -12.78283 -12.55773 -12.18996 -12.16265 -11.96892 -11.83247 -11.64486 -11.55791 -11.34509 -11.19946 -10.77298 -10.43304 -10.11498 -9.67436 -9.50850 -9.33003 -8.38615 -6.33108 0.37311 0.45867 1.27009 1.34377 1.37043 1.57806 2.04891 2.25512 2.72398 2.78470 3.01383 3.46151 3.61961 3.70262 3.92207 3.93784 4.02637 4.15432 4.17868 4.20321 4.24976 4.41761 4.43943 4.46762 4.54019 4.59398 4.60226 4.73380 4.77251 4.86131 4.87841 4.91318 4.92480 4.95319 5.02527 5.19896 5.20916 5.29343 5.37399 5.47664 5.52049 5.57150 5.62980 5.65696 5.70570 5.92942 6.12042 6.28420 6.66501 6.93264 7.28346 7.47685 8.75860 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.016766 B = 0.003931 C = 0.003771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.642442 B = 7121.709323 C = 7423.963287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.090 4.090 3 C -0.127 4.127 4 C -0.117 4.117 5 C -0.114 4.114 6 C -0.075 4.075 7 C -0.127 4.127 8 C -0.087 4.087 9 C 0.124 3.876 10 N -0.630 5.630 11 C 0.702 3.298 12 O -0.635 6.635 13 N -0.720 5.720 14 C 0.164 3.836 15 C -0.037 4.037 16 C -0.478 4.478 17 H 0.052 0.948 18 C 0.053 3.947 19 N -0.923 5.923 20 Si 0.931 3.069 21 H -0.293 1.293 22 H -0.305 1.305 23 H -0.250 1.250 24 C -0.189 4.189 25 C -0.162 4.162 26 C 0.153 3.847 27 H 0.080 0.920 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.142 0.858 31 H 0.131 0.869 32 H 0.141 0.859 33 H 0.114 0.886 34 H 0.071 0.929 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.408 0.592 38 H 0.064 0.936 39 H 0.034 0.966 40 H 0.266 0.734 41 H 0.091 0.909 42 H 0.087 0.913 43 H 0.086 0.914 44 H 0.095 0.905 45 H 0.085 0.915 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.651 -5.976 -0.965 20.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.090 4.090 3 C -0.145 4.145 4 C -0.135 4.135 5 C -0.115 4.115 6 C -0.076 4.076 7 C -0.145 4.145 8 C -0.124 4.124 9 C 0.002 3.998 10 N -0.367 5.367 11 C 0.404 3.596 12 O -0.518 6.518 13 N -0.376 5.376 14 C 0.040 3.960 15 C -0.038 4.038 16 C -0.516 4.516 17 H 0.070 0.930 18 C -0.148 4.148 19 N -0.562 5.562 20 Si 0.763 3.237 21 H -0.221 1.221 22 H -0.234 1.234 23 H -0.175 1.175 24 C -0.227 4.227 25 C -0.199 4.199 26 C 0.030 3.970 27 H 0.098 0.902 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.160 0.840 31 H 0.149 0.851 32 H 0.158 0.842 33 H 0.132 0.868 34 H 0.089 0.911 35 H 0.103 0.897 36 H 0.103 0.897 37 H 0.246 0.754 38 H 0.082 0.918 39 H 0.052 0.948 40 H 0.076 0.924 41 H 0.109 0.891 42 H 0.105 0.895 43 H 0.105 0.895 44 H 0.113 0.887 45 H 0.103 0.897 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -19.286 -6.715 -0.944 20.444 hybrid contribution 0.889 0.008 -0.495 1.018 sum -18.397 -6.708 -1.439 19.635 Atomic orbital electron populations 1.20821 0.89118 1.03630 1.03162 1.20216 0.97586 0.92827 0.98410 1.21221 0.93533 0.98792 1.00958 1.21226 0.95149 0.97279 0.99885 1.19754 0.94106 0.94118 1.03477 1.19622 0.94157 0.94202 0.99575 1.21259 0.92687 0.98868 1.01648 1.20795 0.94282 0.94489 1.02873 1.21618 0.93065 0.88797 0.96328 1.47208 1.34384 1.09305 1.45803 1.15982 0.79982 0.84431 0.79217 1.90798 1.69450 1.24273 1.67295 1.45186 1.30814 1.08672 1.52937 1.21026 0.85596 0.96637 0.92727 1.19448 1.02877 0.92948 0.88567 1.20395 1.39015 0.93419 0.98724 0.93007 1.25318 0.95489 0.98501 0.95491 1.69986 1.44887 1.36608 1.04695 0.86265 0.77578 0.81841 0.78060 1.22060 1.23382 1.17537 1.23144 0.93939 1.02027 1.03586 1.22855 0.95577 1.01235 1.00254 1.20437 0.90595 0.83766 1.02180 0.90172 0.90732 0.90692 0.84004 0.85099 0.84155 0.86771 0.91052 0.89705 0.89713 0.75365 0.91764 0.94815 0.92437 0.89077 0.89477 0.89519 0.88690 0.89730 0.90083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.27 10.02 71.23 0.71 -0.56 16 2 C -0.09 -1.62 5.87 -19.94 -0.12 -1.74 16 3 C -0.13 -2.46 9.71 22.21 0.22 -2.24 16 4 C -0.12 -2.69 9.62 22.35 0.22 -2.48 16 5 C -0.11 -2.95 5.82 -19.82 -0.12 -3.07 16 6 C -0.08 -1.76 5.76 -19.85 -0.11 -1.87 16 7 C -0.13 -2.44 9.25 22.37 0.21 -2.23 16 8 C -0.09 -1.89 5.86 29.74 0.17 -1.72 16 9 C 0.12 3.41 6.43 86.17 0.55 3.96 16 10 N -0.63 -21.49 2.93 -842.08 -2.47 -23.96 16 11 C 0.70 29.61 8.32 179.06 1.49 31.10 16 12 O -0.64 -30.30 15.83 -3.99 -0.06 -30.37 16 13 N -0.72 -30.71 5.05 -478.55 -2.41 -33.12 16 14 C 0.16 7.29 4.36 86.38 0.38 7.67 16 15 C -0.04 -1.64 1.41 -52.93 -0.07 -1.71 16 16 C -0.48 -25.07 8.86 25.60 0.23 -24.84 16 17 H 0.05 2.97 8.06 -2.91 -0.02 2.94 16 18 C 0.05 2.88 5.42 84.66 0.46 3.34 16 19 N -0.92 -53.81 13.96 21.45 0.30 -53.51 16 20 Si 0.93 46.61 24.03 68.60 1.65 48.25 16 21 H -0.29 -15.32 7.11 99.48 0.71 -14.61 16 22 H -0.31 -15.33 7.11 99.48 0.71 -14.62 16 23 H -0.25 -11.91 6.38 99.48 0.63 -11.27 16 24 C -0.19 -7.29 9.96 30.62 0.30 -6.99 16 25 C -0.16 -6.00 9.93 30.62 0.30 -5.70 16 26 C 0.15 4.59 6.07 85.63 0.52 5.11 16 27 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.07 0.73 8.09 -2.39 -0.02 0.71 16 29 H 0.07 0.74 8.09 -2.39 -0.02 0.72 16 30 H 0.14 2.08 8.06 -2.91 -0.02 2.06 16 31 H 0.13 2.78 8.05 -2.91 -0.02 2.76 16 32 H 0.14 2.02 8.05 -2.91 -0.02 2.00 16 33 H 0.11 1.76 8.11 -2.38 -0.02 1.74 16 34 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 35 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.08 2.55 7.09 -2.39 -0.02 2.53 16 37 H 0.41 16.94 5.64 -92.71 -0.52 16.42 16 38 H 0.06 2.71 8.06 -2.39 -0.02 2.69 16 39 H 0.03 1.66 2.57 -2.38 -0.01 1.66 16 40 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 41 H 0.09 3.16 8.14 -2.39 -0.02 3.14 16 42 H 0.09 3.39 8.14 -2.39 -0.02 3.38 16 43 H 0.09 3.17 8.14 -2.39 -0.02 3.15 16 44 H 0.09 3.13 8.14 -2.39 -0.02 3.11 16 45 H 0.08 2.65 5.97 -2.39 -0.01 2.64 16 46 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 Total: -1.00 -67.35 364.33 2.73 -64.62 By element: Atomic # 1 Polarization: 31.65 SS G_CDS: 0.39 Total: 32.05 kcal Atomic # 6 Polarization: -9.30 SS G_CDS: 5.34 Total: -3.96 kcal Atomic # 7 Polarization: -106.01 SS G_CDS: -4.59 Total: -110.60 kcal Atomic # 8 Polarization: -30.30 SS G_CDS: -0.06 Total: -30.37 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 1.65 Total: 48.25 kcal Total: -67.35 2.73 -64.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336530311.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.888 kcal (2) G-P(sol) polarization free energy of solvation -67.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.622 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds