Wall clock time and date at job start Tue Mar 31 2020 11:36:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38826 * 119.66695 * 2 1 4 4 C 1.36621 * 120.52896 * 179.69888 * 3 2 1 5 5 C 1.39631 * 119.76529 * 0.27963 * 4 3 2 6 6 C 1.46487 * 134.03701 * 179.97438 * 5 4 3 7 7 C 1.50707 * 126.49717 * 0.02562 * 6 5 4 8 8 C 1.52997 * 109.47459 * 84.99520 * 7 6 5 9 9 C 1.50695 * 109.47438 * 179.97438 * 8 7 6 10 10 O 1.21277 * 119.99764 * 0.02562 * 9 8 7 11 11 N 1.34780 * 120.00133 * 180.02562 * 9 8 7 12 12 C 1.46499 * 119.99851 * 0.02562 * 11 9 8 13 13 C 1.46497 * 119.99717 * 180.02562 * 11 9 8 14 14 H 1.08993 * 109.47601 * 359.97438 * 13 11 9 15 15 C 1.53004 * 109.47059 * 239.99498 * 13 11 9 16 16 C 1.50707 * 109.46864 * 119.99986 * 13 11 9 17 17 H 1.07992 * 120.00350 * 35.00374 * 16 13 11 18 18 C 1.37884 * 119.99622 * 215.00009 * 16 13 11 19 19 N 1.31511 * 119.99530 * 184.92073 * 18 16 13 20 20 Si 1.86802 * 119.99914 * 4.91606 * 18 16 13 21 21 H 1.48494 * 109.46841 * 84.83843 * 20 18 16 22 22 H 1.48501 * 109.46834 * 204.83331 * 20 18 16 23 23 H 1.48493 * 109.47229 * 324.83181 * 20 18 16 24 24 C 1.34231 * 107.00059 * 179.97438 * 6 5 4 25 25 N 1.36834 * 109.93239 * 0.02562 * 24 6 5 26 26 H 0.96989 * 125.06438 * 179.97438 * 25 24 6 27 27 C 1.37693 * 109.87015 * 0.02562 * 25 24 6 28 28 C 1.37746 * 119.66514 * 180.23836 * 2 1 3 29 29 H 1.09002 * 109.46946 * 89.99746 * 1 2 3 30 30 H 1.09001 * 109.47349 * 210.00137 * 1 2 3 31 31 H 1.09001 * 109.47019 * 330.00264 * 1 2 3 32 32 H 1.08007 * 119.73915 * 359.97438 * 3 2 1 33 33 H 1.08001 * 120.12002 * 180.25287 * 4 3 2 34 34 H 1.08998 * 109.47101 * 204.99955 * 7 6 5 35 35 H 1.09002 * 109.47079 * 324.99939 * 7 6 5 36 36 H 1.08998 * 109.47319 * 300.00301 * 8 7 6 37 37 H 1.09008 * 109.47060 * 60.00010 * 8 7 6 38 38 H 1.09001 * 109.47250 * 90.00383 * 12 11 9 39 39 H 1.09001 * 109.46887 * 210.00074 * 12 11 9 40 40 H 1.09005 * 109.47071 * 329.99770 * 12 11 9 41 41 H 1.09000 * 109.46419 * 54.97746 * 15 13 11 42 42 H 1.09000 * 109.47330 * 174.98063 * 15 13 11 43 43 H 1.09003 * 109.47213 * 294.98065 * 15 13 11 44 44 H 0.97004 * 119.99407 * 180.02562 * 19 18 16 45 45 H 1.07999 * 125.03504 * 179.97438 * 24 6 5 46 46 H 1.08002 * 120.11411 * 0.03654 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1941 1.2063 0.0000 4 6 3.5602 1.2268 0.0062 5 6 4.2715 0.0253 0.0066 6 6 5.6965 -0.3144 0.0118 7 6 6.8493 0.6562 0.0191 8 6 7.1524 1.0774 1.4584 9 6 8.3056 2.0475 1.4657 10 8 8.8329 2.3705 0.4224 11 7 8.7511 2.5560 2.6316 12 6 8.1146 2.1653 3.8919 13 6 9.8718 3.4995 2.6386 14 1 10.2118 3.6675 1.6168 15 6 11.0197 2.9217 3.4690 16 6 9.4244 4.8064 3.2410 17 1 8.7063 4.8116 4.0475 18 6 9.9321 5.9957 2.7624 19 7 9.6169 7.1291 3.3502 20 14 11.0678 5.9969 1.2792 21 1 10.2570 6.0027 0.0351 22 1 11.9277 7.2070 1.3152 23 1 11.9212 4.7821 1.3083 24 6 5.7806 -1.6541 0.0100 25 7 4.5259 -2.2002 0.0035 26 1 4.3319 -3.1505 0.0007 27 6 3.5800 -1.1997 0.0003 28 6 2.1888 -1.1969 -0.0050 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5138 32 1 1.6444 2.1360 -0.0004 33 1 4.0880 2.1691 0.0103 34 1 7.7289 0.1788 -0.4127 35 1 6.5876 1.5357 -0.5693 36 1 6.2728 1.5548 1.8901 37 1 7.4142 0.1980 2.0468 38 1 8.6157 1.2850 4.2945 39 1 8.1901 2.9850 4.6065 40 1 7.0643 1.9354 3.7125 41 1 11.2837 1.9355 3.0871 42 1 11.8850 3.5811 3.4013 43 1 10.7082 2.8368 4.5101 44 1 9.9738 7.9658 3.0132 45 1 6.7019 -2.2174 0.0124 46 1 1.6451 -2.1301 -0.0095 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362601016.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:35 Heat of formation + Delta-G solvation = 7.234294 kcal Electronic energy + Delta-G solvation = -25503.089455 eV Core-core repulsion = 21971.513578 eV Total energy + Delta-G solvation = -3531.575877 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.35752 -39.11784 -37.47662 -35.47538 -33.98145 -32.64813 -32.03673 -30.61209 -29.96018 -28.79724 -26.33212 -26.09110 -25.24174 -24.21402 -22.84989 -21.01289 -20.72131 -19.25013 -18.12974 -17.84931 -17.15558 -16.35933 -15.98744 -15.43080 -15.29650 -15.02167 -14.64923 -14.30410 -14.04965 -13.86394 -13.55524 -13.41880 -13.00443 -12.66665 -12.49535 -12.42064 -12.30341 -12.12340 -12.04405 -11.91376 -11.65130 -11.52568 -11.32900 -11.27474 -11.01671 -10.91792 -10.70182 -10.57619 -10.37623 -9.75409 -9.57087 -9.24665 -8.90078 -8.57292 -8.21181 -7.65161 -7.59676 -6.13924 -4.15725 1.04667 1.55468 2.59641 3.01442 3.34376 3.40888 3.42859 3.48978 3.80207 3.99037 4.41871 4.60928 4.73105 4.80409 4.93539 5.13544 5.16687 5.23320 5.27274 5.37660 5.40394 5.44233 5.51956 5.59809 5.68589 5.71011 5.80835 5.90572 5.95530 6.00509 6.03286 6.28011 6.32698 6.38582 6.41133 6.44381 6.50740 6.55478 6.63095 6.69252 6.77692 6.97497 7.10830 7.12799 7.42734 7.53735 7.69479 8.21052 8.56194 8.87625 9.04339 9.49193 10.98065 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.018540 B = 0.002929 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.905461 B = 9556.193583 C =10159.393656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.068 4.068 3 C -0.148 4.148 4 C -0.061 4.061 5 C -0.106 4.106 6 C -0.156 4.156 7 C -0.030 4.030 8 C -0.130 4.130 9 C 0.502 3.498 10 O -0.560 6.560 11 N -0.591 5.591 12 C 0.083 3.917 13 C 0.221 3.779 14 H 0.064 0.936 15 C -0.146 4.146 16 C -0.524 4.524 17 H 0.078 0.922 18 C 0.079 3.921 19 N -0.893 5.893 20 Si 0.875 3.125 21 H -0.271 1.271 22 H -0.288 1.288 23 H -0.264 1.264 24 C 0.044 3.956 25 N -0.598 5.598 26 H 0.413 0.587 27 C 0.099 3.901 28 C -0.137 4.137 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.121 0.879 33 H 0.125 0.875 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.041 0.959 39 H 0.080 0.920 40 H 0.057 0.943 41 H 0.025 0.975 42 H 0.054 0.946 43 H 0.049 0.951 44 H 0.266 0.734 45 H 0.169 0.831 46 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.391 -19.814 -4.643 24.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.069 4.069 3 C -0.168 4.168 4 C -0.079 4.079 5 C -0.111 4.111 6 C -0.163 4.163 7 C -0.068 4.068 8 C -0.171 4.171 9 C 0.290 3.710 10 O -0.440 6.440 11 N -0.322 5.322 12 C -0.061 4.061 13 C 0.120 3.880 14 H 0.082 0.918 15 C -0.204 4.204 16 C -0.562 4.562 17 H 0.096 0.904 18 C -0.125 4.125 19 N -0.530 5.530 20 Si 0.702 3.298 21 H -0.196 1.196 22 H -0.215 1.215 23 H -0.189 1.189 24 C -0.081 4.081 25 N -0.201 5.201 26 H 0.249 0.751 27 C -0.008 4.008 28 C -0.158 4.158 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.139 0.861 33 H 0.143 0.857 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.107 0.893 37 H 0.102 0.898 38 H 0.060 0.940 39 H 0.099 0.901 40 H 0.076 0.924 41 H 0.044 0.956 42 H 0.073 0.927 43 H 0.068 0.932 44 H 0.076 0.924 45 H 0.186 0.814 46 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -14.053 -19.553 -5.159 24.626 hybrid contribution 0.460 -0.357 -0.522 0.782 sum -13.593 -19.910 -5.681 24.768 Atomic orbital electron populations 1.20759 0.91212 1.02632 1.02142 1.19527 0.95601 0.92319 0.99448 1.20529 0.93953 0.97318 1.04967 1.20370 0.93604 0.96783 0.97193 1.19125 0.92725 0.92447 1.06759 1.20389 0.92629 0.93133 1.10192 1.19652 0.94180 0.97340 0.95628 1.21655 0.97831 0.98943 0.98625 1.20579 0.84666 0.81827 0.83931 1.90624 1.59764 1.61989 1.31612 1.48314 1.34266 1.44178 1.05418 1.21616 0.96423 1.00253 0.87769 1.19291 0.83069 0.87775 0.97821 0.91821 1.22207 0.99525 0.98262 1.00449 1.21134 1.27043 0.88412 1.19656 0.90418 1.24962 0.95777 0.95317 0.96422 1.69895 1.44672 0.98027 1.40420 0.86882 0.81376 0.77447 0.84060 1.19588 1.21474 1.18858 1.21617 0.87510 0.93755 1.05235 1.41679 1.04679 1.07760 1.65990 0.75069 1.18215 0.90663 0.88101 1.03844 1.19781 0.89845 0.97979 1.08204 0.91336 0.91852 0.91415 0.86079 0.85741 0.90650 0.90428 0.89344 0.89773 0.94010 0.90144 0.92402 0.95586 0.92734 0.93238 0.92429 0.81387 0.86630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.80 9.99 36.01 0.36 -0.44 16 2 C -0.07 -0.69 5.88 -104.58 -0.61 -1.30 16 3 C -0.15 -1.66 9.61 -39.95 -0.38 -2.04 16 4 C -0.06 -0.78 10.05 -39.65 -0.40 -1.18 16 5 C -0.11 -1.40 6.35 -105.14 -0.67 -2.06 16 6 C -0.16 -1.97 5.57 -102.71 -0.57 -2.54 16 7 C -0.03 -0.42 5.03 -27.88 -0.14 -0.56 16 8 C -0.13 -1.94 4.23 -27.89 -0.12 -2.06 16 9 C 0.50 10.19 7.67 -10.99 -0.08 10.11 16 10 O -0.56 -13.47 15.31 5.56 0.09 -13.38 16 11 N -0.59 -12.39 2.75 -175.26 -0.48 -12.87 16 12 C 0.08 1.39 9.39 59.85 0.56 1.95 16 13 C 0.22 5.40 2.30 -69.08 -0.16 5.24 16 14 H 0.06 1.71 4.05 -51.93 -0.21 1.50 16 15 C -0.15 -3.11 9.10 37.16 0.34 -2.77 16 16 C -0.52 -14.53 8.72 -34.43 -0.30 -14.83 16 17 H 0.08 2.27 6.82 -52.49 -0.36 1.91 16 18 C 0.08 2.28 5.47 -17.82 -0.10 2.18 16 19 N -0.89 -27.05 13.96 55.43 0.77 -26.27 16 20 Si 0.88 22.49 26.99 -169.99 -4.59 17.90 16 21 H -0.27 -7.13 7.11 56.52 0.40 -6.73 16 22 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 23 H -0.26 -6.55 6.82 56.52 0.39 -6.17 16 24 C 0.04 0.44 11.73 -16.73 -0.20 0.24 16 25 N -0.60 -5.47 6.07 -10.65 -0.06 -5.53 16 26 H 0.41 2.39 8.96 -40.82 -0.37 2.03 16 27 C 0.10 1.14 7.28 -83.98 -0.61 0.53 16 28 C -0.14 -1.40 9.71 -39.43 -0.38 -1.78 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.39 8.08 -51.93 -0.42 -0.03 16 31 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 32 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 33 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 34 H 0.07 1.06 8.10 -51.93 -0.42 0.64 16 35 H 0.08 1.23 8.10 -51.93 -0.42 0.81 16 36 H 0.09 1.27 7.40 -51.93 -0.38 0.89 16 37 H 0.08 1.07 8.11 -51.92 -0.42 0.65 16 38 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.08 1.46 6.56 -51.93 -0.34 1.12 16 40 H 0.06 0.82 6.44 -51.93 -0.33 0.48 16 41 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.05 1.18 8.14 -51.93 -0.42 0.75 16 43 H 0.05 0.98 7.84 -51.93 -0.41 0.58 16 44 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 45 H 0.17 1.20 8.06 -52.49 -0.42 0.78 16 46 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 LS Contribution 375.87 15.07 5.66 5.66 Total: -1.00 -34.45 375.87 -9.11 -43.57 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -7.04 Total: 2.26 kcal Atomic # 6 Polarization: -7.87 SS G_CDS: -3.47 Total: -11.34 kcal Atomic # 7 Polarization: -44.90 SS G_CDS: 0.23 Total: -44.67 kcal Atomic # 8 Polarization: -13.47 SS G_CDS: 0.09 Total: -13.38 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -4.59 Total: 17.90 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.45 -9.11 -43.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362601016.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.802 kcal (2) G-P(sol) polarization free energy of solvation -34.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds