Wall clock time and date at job start Tue Mar 31 2020 10:41:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86793 * 119.99980 * 2 1 4 4 H 1.48498 * 109.47692 * 240.00290 * 3 2 1 5 5 H 1.48496 * 109.47317 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47005 * 120.00531 * 3 2 1 7 7 C 1.37876 * 119.99847 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00040 * 186.22775 * 7 2 1 9 9 C 1.50703 * 120.00177 * 6.22031 * 7 2 1 10 10 C 1.52997 * 115.56156 * 274.65235 * 9 7 2 11 11 N 1.46504 * 109.47244 * 320.19992 * 10 9 7 12 12 C 1.34773 * 119.99966 * 182.96553 * 11 10 9 13 13 O 1.21288 * 120.00321 * 0.02562 * 12 11 10 14 14 C 1.50705 * 120.00064 * 180.02562 * 12 11 10 15 15 H 1.08996 * 110.36712 * 59.29809 * 14 12 11 16 16 C 1.54375 * 110.40931 * 296.94726 * 14 12 11 17 17 C 1.54259 * 105.06199 * 217.36604 * 16 14 12 18 18 C 1.54374 * 105.05733 * 0.02562 * 17 16 14 19 19 N 1.48555 * 110.41180 * 181.64929 * 14 12 11 20 20 C 1.39679 * 111.00107 * 277.81861 * 19 14 12 21 21 C 1.38912 * 120.07329 * 8.01159 * 20 19 14 22 22 C 1.38106 * 119.92643 * 179.77289 * 21 20 19 23 23 C 1.38289 * 120.07038 * 0.50192 * 22 21 20 24 24 C 1.38285 * 120.15177 * 359.75185 * 23 22 21 25 25 C 1.38105 * 120.07454 * 359.97438 * 24 23 22 26 26 C 1.52995 * 117.49592 * 60.34072 * 9 7 2 27 27 C 1.53000 * 60.00231 * 107.49068 * 26 9 7 28 28 H 0.97006 * 120.00011 * 354.97851 * 1 2 3 29 29 H 1.09003 * 109.47222 * 80.20113 * 10 9 7 30 30 H 1.09000 * 109.47077 * 200.20432 * 10 9 7 31 31 H 0.96997 * 120.00075 * 2.96834 * 11 10 9 32 32 H 1.09000 * 110.32619 * 336.26974 * 16 14 12 33 33 H 1.09002 * 110.32056 * 98.36800 * 16 14 12 34 34 H 1.08993 * 110.32280 * 118.89665 * 17 16 14 35 35 H 1.09001 * 110.32202 * 241.00583 * 17 16 14 36 36 H 1.09005 * 110.41253 * 142.63338 * 18 17 16 37 37 H 1.09006 * 110.41105 * 264.95077 * 18 17 16 38 38 H 1.07998 * 120.03614 * 0.02562 * 21 20 19 39 39 H 1.07996 * 119.96467 * 180.25614 * 22 21 20 40 40 H 1.07998 * 119.92512 * 179.71979 * 23 22 21 41 41 H 1.08002 * 119.96556 * 179.97438 * 24 23 22 42 42 H 1.07999 * 120.03631 * 179.97438 * 25 24 23 43 43 H 1.09002 * 117.50212 * 359.97438 * 26 9 7 44 44 H 1.09000 * 117.49721 * 214.97638 * 26 9 7 45 45 H 1.08995 * 117.49996 * 107.48332 * 27 26 9 46 46 H 1.09000 * 117.49884 * 252.49346 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0797 -1.1969 0.1009 9 6 1.2576 -2.4953 -0.1425 10 6 0.7047 -3.0843 1.1568 11 7 1.6820 -2.8979 2.2322 12 6 1.4348 -3.3938 3.4608 13 8 0.4035 -3.9948 3.6760 14 6 2.4398 -3.2015 4.5672 15 1 2.6120 -2.1397 4.7429 16 6 3.7656 -3.9118 4.2197 17 6 4.2758 -4.4855 5.5576 18 6 3.2149 -4.0741 6.6009 19 7 1.9726 -3.8636 5.8123 20 6 1.0697 -3.0516 6.5026 21 6 0.5985 -1.8823 5.9193 22 6 -0.2978 -1.0841 6.6026 23 6 -0.7180 -1.4424 7.8704 24 6 -0.2468 -2.6031 8.4562 25 6 0.6452 -3.4087 7.7761 26 6 0.4384 -2.7040 -1.4177 27 6 1.7435 -3.4756 -1.2121 28 1 -0.4850 0.8369 0.0735 29 1 -0.2246 -2.5783 1.4185 30 1 0.5131 -4.1486 1.0206 31 1 2.5069 -2.4175 2.0601 32 1 3.5884 -4.7162 3.5058 33 1 4.4825 -3.1979 3.8141 34 1 4.3489 -5.5715 5.5006 35 1 5.2446 -4.0541 5.8096 36 1 3.0720 -4.8698 7.3320 37 1 3.5095 -3.1501 7.0987 38 1 0.9294 -1.5998 4.9308 39 1 -0.6677 -0.1770 6.1480 40 1 -1.4154 -0.8142 8.4045 41 1 -0.5767 -2.8798 9.4467 42 1 1.0132 -4.3148 8.2344 43 1 0.4392 -1.9000 -2.1537 44 1 -0.4946 -3.2610 -1.3309 45 1 1.6691 -4.5401 -0.9900 46 1 2.6032 -3.1796 -1.8132 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000366801896.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:41:07 Heat of formation + Delta-G solvation = 27.712836 kcal Electronic energy + Delta-G solvation = -26680.732376 eV Core-core repulsion = 23150.044515 eV Total energy + Delta-G solvation = -3530.687861 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.69979 -38.58137 -37.40910 -36.50466 -33.34128 -32.54065 -32.05392 -31.09306 -29.46775 -28.26608 -26.18594 -25.26922 -23.38374 -22.66372 -21.28919 -21.07313 -20.62732 -19.57240 -19.03598 -17.69257 -16.97100 -16.14244 -15.79195 -15.32678 -14.89659 -14.78830 -14.65651 -14.36644 -14.08556 -13.73144 -13.48263 -13.31384 -13.19155 -12.83129 -12.62319 -12.40614 -12.15789 -11.94987 -11.66285 -11.55323 -11.30814 -11.25174 -11.05455 -10.98332 -10.94595 -10.62565 -10.59015 -10.25047 -9.74740 -9.63764 -9.14385 -8.94527 -8.79237 -8.56458 -8.32633 -7.93660 -7.76922 -6.14331 -4.24461 1.51264 1.54562 3.19888 3.26210 3.27633 3.28703 3.47121 3.93109 4.19187 4.28676 4.46974 4.62167 4.85957 5.02034 5.08038 5.11868 5.13267 5.22831 5.27580 5.32157 5.45392 5.51635 5.55295 5.63771 5.67950 5.77856 5.84669 5.91915 5.99719 6.03751 6.13769 6.29669 6.32432 6.48478 6.51330 6.56363 6.68889 6.71335 6.85569 6.89895 6.93866 7.08377 7.28076 7.36848 7.38522 7.50518 7.73521 8.29079 8.43371 8.77703 9.00945 9.43109 10.93191 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.012924 B = 0.004345 C = 0.003892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2165.951748 B = 6442.100984 C = 7192.894492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.078 3.922 3 Si 0.888 3.112 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.506 4.506 8 H 0.060 0.940 9 C 0.029 3.971 10 C 0.167 3.833 11 N -0.695 5.695 12 C 0.509 3.491 13 O -0.536 6.536 14 C 0.039 3.961 15 H 0.087 0.913 16 C -0.116 4.116 17 C -0.122 4.122 18 C 0.038 3.962 19 N -0.442 5.442 20 C 0.116 3.884 21 C -0.155 4.155 22 C -0.092 4.092 23 C -0.150 4.150 24 C -0.101 4.101 25 C -0.142 4.142 26 C -0.151 4.151 27 C -0.211 4.211 28 H 0.263 0.737 29 H 0.064 0.936 30 H 0.037 0.963 31 H 0.404 0.596 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.088 0.912 37 H 0.054 0.946 38 H 0.124 0.876 39 H 0.121 0.879 40 H 0.118 0.882 41 H 0.120 0.880 42 H 0.121 0.879 43 H 0.082 0.918 44 H 0.064 0.936 45 H 0.065 0.935 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.545 -4.501 13.711 15.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.127 4.127 3 Si 0.715 3.285 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.543 4.543 8 H 0.078 0.922 9 C 0.028 3.972 10 C 0.043 3.957 11 N -0.346 5.346 12 C 0.293 3.707 13 O -0.413 6.413 14 C -0.072 4.072 15 H 0.105 0.895 16 C -0.155 4.155 17 C -0.160 4.160 18 C -0.087 4.087 19 N -0.156 5.156 20 C 0.018 3.982 21 C -0.176 4.176 22 C -0.111 4.111 23 C -0.169 4.169 24 C -0.120 4.120 25 C -0.162 4.162 26 C -0.189 4.189 27 C -0.248 4.248 28 H 0.073 0.927 29 H 0.082 0.918 30 H 0.056 0.944 31 H 0.240 0.760 32 H 0.099 0.901 33 H 0.102 0.898 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.106 0.894 37 H 0.072 0.928 38 H 0.141 0.859 39 H 0.139 0.861 40 H 0.136 0.864 41 H 0.138 0.862 42 H 0.139 0.861 43 H 0.101 0.899 44 H 0.083 0.917 45 H 0.084 0.916 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 5.396 -5.350 13.636 15.610 hybrid contribution 0.890 1.914 -0.116 2.114 sum 6.285 -3.436 13.520 15.301 Atomic orbital electron populations 1.69973 1.05925 1.27077 1.47435 1.24982 0.94745 0.98851 0.94146 0.86740 0.79716 0.83300 0.78723 1.20104 1.21253 1.20210 1.20252 0.92708 0.88584 1.52790 0.92174 1.19015 0.98414 0.93910 0.85857 1.20832 0.91290 0.96927 0.86621 1.45946 1.23825 1.55731 1.09138 1.19958 0.87156 0.80178 0.83429 1.90681 1.26732 1.41600 1.82269 1.22834 0.94864 0.98878 0.90659 0.89520 1.22302 0.94239 1.00726 0.98210 1.22312 0.97866 1.01895 0.93973 1.23217 0.88002 1.01238 0.96249 1.62095 1.10265 1.40049 1.03241 1.18998 0.96301 0.90252 0.92651 1.21323 1.01078 0.94191 1.00977 1.21027 0.96145 0.99342 0.94536 1.21020 1.01910 0.98014 0.95985 1.20930 0.96873 0.94721 0.99479 1.20686 1.00886 1.00541 0.94116 1.22483 0.92288 1.01139 1.02981 1.23085 0.98625 0.95665 1.07421 0.92728 0.91758 0.94438 0.76008 0.90067 0.89822 0.90514 0.90607 0.89376 0.92792 0.85853 0.86071 0.86444 0.86231 0.86115 0.89896 0.91729 0.91634 0.90421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.47 12.91 55.43 0.72 -22.76 16 2 C 0.08 1.99 5.39 -17.82 -0.10 1.89 16 3 Si 0.89 19.76 29.54 -169.99 -5.02 14.74 16 4 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 7 C -0.51 -12.43 7.40 -34.44 -0.25 -12.68 16 8 H 0.06 1.44 7.82 -52.49 -0.41 1.02 16 9 C 0.03 0.66 1.73 -155.66 -0.27 0.39 16 10 C 0.17 3.77 5.75 -4.04 -0.02 3.75 16 11 N -0.70 -13.87 5.33 -60.29 -0.32 -14.19 16 12 C 0.51 9.92 5.56 -10.98 -0.06 9.86 16 13 O -0.54 -12.54 15.95 5.55 0.09 -12.45 16 14 C 0.04 0.59 2.11 -67.22 -0.14 0.45 16 15 H 0.09 1.27 6.50 -51.93 -0.34 0.93 16 16 C -0.12 -1.39 6.51 -25.35 -0.17 -1.56 16 17 C -0.12 -1.18 7.00 -25.35 -0.18 -1.36 16 18 C 0.04 0.42 5.82 -2.14 -0.01 0.41 16 19 N -0.44 -6.68 4.74 -160.53 -0.76 -7.44 16 20 C 0.12 1.82 5.18 -83.78 -0.43 1.39 16 21 C -0.16 -2.58 8.22 -39.38 -0.32 -2.91 16 22 C -0.09 -1.37 10.04 -39.61 -0.40 -1.76 16 23 C -0.15 -1.94 10.04 -39.55 -0.40 -2.34 16 24 C -0.10 -1.25 10.04 -39.61 -0.40 -1.65 16 25 C -0.14 -1.93 9.31 -39.38 -0.37 -2.30 16 26 C -0.15 -3.42 9.44 -26.73 -0.25 -3.68 16 27 C -0.21 -4.38 9.88 -26.73 -0.26 -4.64 16 28 H 0.26 6.88 8.32 -40.82 -0.34 6.55 16 29 H 0.06 1.65 8.14 -51.93 -0.42 1.23 16 30 H 0.04 0.84 7.95 -51.93 -0.41 0.42 16 31 H 0.40 7.58 7.38 -40.82 -0.30 7.28 16 32 H 0.08 1.05 7.85 -51.93 -0.41 0.65 16 33 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.09 0.85 7.91 -51.93 -0.41 0.44 16 37 H 0.05 0.56 7.98 -51.93 -0.41 0.14 16 38 H 0.12 2.22 5.10 -52.49 -0.27 1.95 16 39 H 0.12 1.64 8.06 -52.49 -0.42 1.22 16 40 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 41 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 42 H 0.12 1.41 7.71 -52.49 -0.40 1.01 16 43 H 0.08 2.00 8.14 -51.93 -0.42 1.57 16 44 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 45 H 0.07 1.26 8.08 -51.93 -0.42 0.84 16 46 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 LS Contribution 372.97 15.07 5.62 5.62 Total: -1.00 -30.02 372.97 -10.86 -40.88 By element: Atomic # 1 Polarization: 19.49 SS G_CDS: -7.15 Total: 12.34 kcal Atomic # 6 Polarization: -12.71 SS G_CDS: -4.03 Total: -16.74 kcal Atomic # 7 Polarization: -44.02 SS G_CDS: -0.37 Total: -44.38 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: 0.09 Total: -12.45 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -5.02 Total: 14.74 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.02 -10.86 -40.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000366801896.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.597 kcal (2) G-P(sol) polarization free energy of solvation -30.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds