Wall clock time and date at job start Tue Mar 31 2020 10:41:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86793 * 119.99980 * 2 1 4 4 H 1.48498 * 109.47692 * 240.00290 * 3 2 1 5 5 H 1.48496 * 109.47317 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47005 * 120.00531 * 3 2 1 7 7 C 1.37876 * 119.99847 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00040 * 186.22775 * 7 2 1 9 9 C 1.50703 * 120.00177 * 6.22031 * 7 2 1 10 10 C 1.52997 * 115.56156 * 274.65235 * 9 7 2 11 11 N 1.46504 * 109.47244 * 320.19992 * 10 9 7 12 12 C 1.34773 * 119.99966 * 182.96553 * 11 10 9 13 13 O 1.21288 * 120.00321 * 0.02562 * 12 11 10 14 14 C 1.50705 * 120.00064 * 180.02562 * 12 11 10 15 15 H 1.08996 * 110.36712 * 59.29809 * 14 12 11 16 16 C 1.54375 * 110.40931 * 296.94726 * 14 12 11 17 17 C 1.54259 * 105.06199 * 217.36604 * 16 14 12 18 18 C 1.54374 * 105.05733 * 0.02562 * 17 16 14 19 19 N 1.48555 * 110.41180 * 181.64929 * 14 12 11 20 20 C 1.39679 * 111.00107 * 277.81861 * 19 14 12 21 21 C 1.38912 * 120.07329 * 8.01159 * 20 19 14 22 22 C 1.38106 * 119.92643 * 179.77289 * 21 20 19 23 23 C 1.38289 * 120.07038 * 0.50192 * 22 21 20 24 24 C 1.38285 * 120.15177 * 359.75185 * 23 22 21 25 25 C 1.38105 * 120.07454 * 359.97438 * 24 23 22 26 26 C 1.52995 * 117.49592 * 60.34072 * 9 7 2 27 27 C 1.53000 * 60.00231 * 107.49068 * 26 9 7 28 28 H 0.97006 * 120.00011 * 354.97851 * 1 2 3 29 29 H 1.09003 * 109.47222 * 80.20113 * 10 9 7 30 30 H 1.09000 * 109.47077 * 200.20432 * 10 9 7 31 31 H 0.96997 * 120.00075 * 2.96834 * 11 10 9 32 32 H 1.09000 * 110.32619 * 336.26974 * 16 14 12 33 33 H 1.09002 * 110.32056 * 98.36800 * 16 14 12 34 34 H 1.08993 * 110.32280 * 118.89665 * 17 16 14 35 35 H 1.09001 * 110.32202 * 241.00583 * 17 16 14 36 36 H 1.09005 * 110.41253 * 142.63338 * 18 17 16 37 37 H 1.09006 * 110.41105 * 264.95077 * 18 17 16 38 38 H 1.07998 * 120.03614 * 0.02562 * 21 20 19 39 39 H 1.07996 * 119.96467 * 180.25614 * 22 21 20 40 40 H 1.07998 * 119.92512 * 179.71979 * 23 22 21 41 41 H 1.08002 * 119.96556 * 179.97438 * 24 23 22 42 42 H 1.07999 * 120.03631 * 179.97438 * 25 24 23 43 43 H 1.09002 * 117.50212 * 359.97438 * 26 9 7 44 44 H 1.09000 * 117.49721 * 214.97638 * 26 9 7 45 45 H 1.08995 * 117.49996 * 107.48332 * 27 26 9 46 46 H 1.09000 * 117.49884 * 252.49346 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0797 -1.1969 0.1009 9 6 1.2576 -2.4953 -0.1425 10 6 0.7047 -3.0843 1.1568 11 7 1.6820 -2.8979 2.2322 12 6 1.4348 -3.3938 3.4608 13 8 0.4035 -3.9948 3.6760 14 6 2.4398 -3.2015 4.5672 15 1 2.6120 -2.1397 4.7429 16 6 3.7656 -3.9118 4.2197 17 6 4.2758 -4.4855 5.5576 18 6 3.2149 -4.0741 6.6009 19 7 1.9726 -3.8636 5.8123 20 6 1.0697 -3.0516 6.5026 21 6 0.5985 -1.8823 5.9193 22 6 -0.2978 -1.0841 6.6026 23 6 -0.7180 -1.4424 7.8704 24 6 -0.2468 -2.6031 8.4562 25 6 0.6452 -3.4087 7.7761 26 6 0.4384 -2.7040 -1.4177 27 6 1.7435 -3.4756 -1.2121 28 1 -0.4850 0.8369 0.0735 29 1 -0.2246 -2.5783 1.4185 30 1 0.5131 -4.1486 1.0206 31 1 2.5069 -2.4175 2.0601 32 1 3.5884 -4.7162 3.5058 33 1 4.4825 -3.1979 3.8141 34 1 4.3489 -5.5715 5.5006 35 1 5.2446 -4.0541 5.8096 36 1 3.0720 -4.8698 7.3320 37 1 3.5095 -3.1501 7.0987 38 1 0.9294 -1.5998 4.9308 39 1 -0.6677 -0.1770 6.1480 40 1 -1.4154 -0.8142 8.4045 41 1 -0.5767 -2.8798 9.4467 42 1 1.0132 -4.3148 8.2344 43 1 0.4392 -1.9000 -2.1537 44 1 -0.4946 -3.2610 -1.3309 45 1 1.6691 -4.5401 -0.9900 46 1 2.6032 -3.1796 -1.8132 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000366801896.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:41:06 Heat of formation + Delta-G solvation = 10.282628 kcal Electronic energy + Delta-G solvation = -26681.488206 eV Core-core repulsion = 23150.044515 eV Total energy + Delta-G solvation = -3531.443691 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.88330 -40.02172 -38.68322 -38.13565 -34.97334 -34.01268 -33.59672 -32.18378 -30.61375 -29.29078 -27.93937 -27.09320 -24.50960 -23.68927 -22.96398 -22.41784 -21.58849 -21.34593 -20.50731 -18.80577 -18.44380 -17.88339 -16.87835 -16.76445 -16.59164 -16.20817 -15.92778 -15.84495 -15.30641 -15.08803 -14.76893 -14.60341 -14.36365 -14.28130 -13.94035 -13.74723 -13.56180 -13.47726 -13.08567 -12.94155 -12.79600 -12.62176 -12.38930 -12.26977 -12.21368 -12.03091 -12.00524 -11.55296 -11.45547 -10.94249 -10.80942 -10.61220 -10.45844 -10.10817 -9.88180 -9.72284 -8.85619 -8.10633 -6.25191 0.45029 0.45524 1.42666 1.45724 1.51262 1.72903 2.17897 2.41527 2.79478 3.00373 3.18093 3.42962 3.50022 3.58165 3.89266 3.99395 4.02194 4.11558 4.20584 4.25637 4.28337 4.46483 4.50835 4.53149 4.55402 4.65413 4.67414 4.72380 4.75360 4.86411 4.92957 4.98895 5.01943 5.05757 5.10241 5.17084 5.24487 5.34037 5.45754 5.48541 5.60654 5.62214 5.70730 5.75732 5.82428 5.88248 6.29626 6.36217 6.80129 6.86415 7.42524 7.45532 8.96689 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.012924 B = 0.004345 C = 0.003892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2165.951748 B = 6442.100984 C = 7192.894492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.031 3.969 3 Si 0.946 3.054 4 H -0.270 1.270 5 H -0.295 1.295 6 H -0.265 1.265 7 C -0.505 4.505 8 H 0.069 0.931 9 C 0.007 3.993 10 C 0.181 3.819 11 N -0.692 5.692 12 C 0.509 3.491 13 O -0.580 6.580 14 C 0.045 3.955 15 H 0.090 0.910 16 C -0.115 4.115 17 C -0.113 4.113 18 C 0.037 3.963 19 N -0.461 5.461 20 C 0.101 3.899 21 C -0.187 4.187 22 C -0.110 4.110 23 C -0.152 4.152 24 C -0.095 4.095 25 C -0.148 4.148 26 C -0.162 4.162 27 C -0.179 4.179 28 H 0.258 0.742 29 H 0.022 0.978 30 H 0.037 0.963 31 H 0.410 0.590 32 H 0.068 0.932 33 H 0.104 0.896 34 H 0.084 0.916 35 H 0.104 0.896 36 H 0.104 0.896 37 H 0.062 0.938 38 H 0.097 0.903 39 H 0.122 0.878 40 H 0.145 0.855 41 H 0.156 0.844 42 H 0.142 0.858 43 H 0.064 0.936 44 H 0.067 0.933 45 H 0.086 0.914 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.848 -5.138 15.697 18.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.170 4.170 3 Si 0.772 3.228 4 H -0.196 1.196 5 H -0.221 1.221 6 H -0.190 1.190 7 C -0.543 4.543 8 H 0.087 0.913 9 C 0.006 3.994 10 C 0.057 3.943 11 N -0.343 5.343 12 C 0.295 3.705 13 O -0.460 6.460 14 C -0.066 4.066 15 H 0.107 0.893 16 C -0.153 4.153 17 C -0.151 4.151 18 C -0.088 4.088 19 N -0.176 5.176 20 C 0.003 3.997 21 C -0.208 4.208 22 C -0.128 4.128 23 C -0.170 4.170 24 C -0.113 4.113 25 C -0.168 4.168 26 C -0.200 4.200 27 C -0.216 4.216 28 H 0.067 0.933 29 H 0.040 0.960 30 H 0.056 0.944 31 H 0.248 0.752 32 H 0.087 0.913 33 H 0.122 0.878 34 H 0.103 0.897 35 H 0.123 0.877 36 H 0.123 0.877 37 H 0.080 0.920 38 H 0.115 0.885 39 H 0.140 0.860 40 H 0.163 0.837 41 H 0.174 0.826 42 H 0.160 0.840 43 H 0.083 0.917 44 H 0.085 0.915 45 H 0.105 0.895 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 7.750 -5.990 15.626 18.442 hybrid contribution 0.111 2.065 -0.712 2.188 sum 7.861 -3.925 14.914 17.310 Atomic orbital electron populations 1.70119 1.07460 1.27356 1.49295 1.25679 0.95277 1.01954 0.94117 0.85798 0.78426 0.79398 0.79157 1.19555 1.22146 1.18966 1.20549 0.93136 0.89114 1.51458 0.91316 1.19090 0.99392 0.94680 0.86191 1.20476 0.90323 0.96146 0.87386 1.45851 1.23440 1.55916 1.09093 1.20754 0.87290 0.78584 0.83855 1.90642 1.28828 1.43586 1.82973 1.22756 0.94814 0.99639 0.89434 0.89288 1.22376 0.92753 1.00620 0.99574 1.22338 0.98541 1.02467 0.91741 1.23383 0.86574 1.02239 0.96560 1.62129 1.12035 1.39801 1.03669 1.19233 0.96814 0.90052 0.93593 1.21280 1.03113 0.95950 1.00476 1.21209 0.96376 0.99500 0.95748 1.21354 1.01904 0.98663 0.95117 1.21379 0.95480 0.93743 1.00676 1.21008 1.01006 1.01442 0.93358 1.22410 0.93616 1.01448 1.02536 1.23079 0.97415 0.96212 1.04933 0.93296 0.96006 0.94448 0.75238 0.91276 0.87773 0.89719 0.87710 0.87741 0.91988 0.88534 0.86024 0.83727 0.82625 0.84046 0.91748 0.91481 0.89547 0.89447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.62 12.91 21.45 0.28 -50.35 16 2 C 0.03 1.61 5.39 84.65 0.46 2.06 16 3 Si 0.95 40.76 29.54 68.60 2.03 42.78 16 4 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 5 H -0.30 -13.04 7.11 99.48 0.71 -12.33 16 6 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 7 C -0.50 -24.83 7.40 25.60 0.19 -24.64 16 8 H 0.07 3.20 7.82 -2.91 -0.02 3.18 16 9 C 0.01 0.33 1.73 -52.93 -0.09 0.24 16 10 C 0.18 8.52 5.75 86.38 0.50 9.02 16 11 N -0.69 -28.40 5.33 -463.04 -2.47 -30.87 16 12 C 0.51 20.53 5.56 87.66 0.49 21.01 16 13 O -0.58 -28.44 15.95 -3.05 -0.05 -28.49 16 14 C 0.04 1.36 2.11 44.32 0.09 1.45 16 15 H 0.09 2.66 6.50 -2.39 -0.02 2.64 16 16 C -0.11 -2.55 6.51 31.49 0.20 -2.34 16 17 C -0.11 -1.83 7.00 31.49 0.22 -1.61 16 18 C 0.04 0.72 5.82 86.43 0.50 1.22 16 19 N -0.46 -13.64 4.74 -661.80 -3.14 -16.78 16 20 C 0.10 3.16 5.18 38.21 0.20 3.36 16 21 C -0.19 -6.50 8.22 22.40 0.18 -6.31 16 22 C -0.11 -3.34 10.04 22.25 0.22 -3.12 16 23 C -0.15 -3.70 10.04 22.29 0.22 -3.48 16 24 C -0.09 -2.10 10.04 22.25 0.22 -1.87 16 25 C -0.15 -3.76 9.31 22.40 0.21 -3.55 16 26 C -0.16 -7.46 9.44 30.59 0.29 -7.17 16 27 C -0.18 -7.23 9.88 30.60 0.30 -6.93 16 28 H 0.26 14.06 8.32 -92.70 -0.77 13.29 16 29 H 0.02 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.04 1.72 7.95 -2.39 -0.02 1.70 16 31 H 0.41 15.56 7.38 -92.71 -0.68 14.87 16 32 H 0.07 1.71 7.85 -2.39 -0.02 1.69 16 33 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.10 1.69 7.91 -2.38 -0.02 1.67 16 37 H 0.06 1.12 7.98 -2.38 -0.02 1.10 16 38 H 0.10 3.75 5.10 -2.91 -0.01 3.73 16 39 H 0.12 3.49 8.06 -2.91 -0.02 3.47 16 40 H 0.14 2.66 8.06 -2.91 -0.02 2.63 16 41 H 0.16 2.29 8.06 -2.91 -0.02 2.27 16 42 H 0.14 2.91 7.71 -2.91 -0.02 2.89 16 43 H 0.06 3.18 8.14 -2.39 -0.02 3.16 16 44 H 0.07 3.00 8.14 -2.39 -0.02 2.98 16 45 H 0.09 3.13 8.08 -2.39 -0.02 3.11 16 46 H 0.09 3.37 8.14 -2.39 -0.02 3.35 16 Total: -1.00 -67.71 372.97 1.35 -66.36 By element: Atomic # 1 Polarization: 39.72 SS G_CDS: 0.29 Total: 40.01 kcal Atomic # 6 Polarization: -27.09 SS G_CDS: 4.41 Total: -22.68 kcal Atomic # 7 Polarization: -92.67 SS G_CDS: -5.33 Total: -98.00 kcal Atomic # 8 Polarization: -28.44 SS G_CDS: -0.05 Total: -28.49 kcal Atomic # 14 Polarization: 40.76 SS G_CDS: 2.03 Total: 42.78 kcal Total: -67.71 1.35 -66.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000366801896.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.644 kcal (2) G-P(sol) polarization free energy of solvation -67.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds