Wall clock time and date at job start Tue Mar 31 2020 10:35:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86800 * 120.00346 * 2 1 4 4 H 1.48495 * 109.46885 * 269.99868 * 3 2 1 5 5 H 1.48497 * 109.47082 * 30.00108 * 3 2 1 6 6 H 1.48499 * 109.47073 * 149.99813 * 3 2 1 7 7 C 1.39944 * 119.99921 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00174 * 197.72786 * 7 2 1 9 9 C 1.41437 * 119.99688 * 17.72924 * 7 2 1 10 10 C 1.40786 * 120.17670 * 204.35385 * 9 7 2 11 11 C 1.37714 * 120.03807 * 180.02562 * 10 9 7 12 12 C 1.38373 * 120.41322 * 0.02562 * 11 10 9 13 13 C 1.39868 * 120.35893 * 359.97438 * 12 11 10 14 14 C 1.47886 * 120.02550 * 180.02562 * 13 12 11 15 15 O 1.21556 * 120.00241 * 180.02562 * 14 13 12 16 16 N 1.34775 * 120.00195 * 0.02562 * 14 13 12 17 17 C 1.46498 * 120.00291 * 180.02562 * 16 14 13 18 18 H 1.09000 * 109.21097 * 325.56021 * 17 16 14 19 19 C 1.52816 * 109.24842 * 84.99655 * 17 16 14 20 20 C 1.53627 * 110.66655 * 66.52738 * 19 17 16 21 21 N 1.45667 * 107.79889 * 57.39136 * 20 19 17 22 22 C 1.47086 * 116.54184 * 177.30726 * 21 20 19 23 23 C 1.55192 * 103.52651 * 162.42756 * 22 21 20 24 24 C 1.54989 * 104.93238 * 336.00379 * 23 22 21 25 25 C 1.48727 * 109.34634 * 294.44307 * 21 20 19 26 26 H 1.09002 * 110.34343 * 308.89382 * 25 21 20 27 27 C 1.52249 * 107.49708 * 69.80678 * 25 21 20 28 28 C 1.39032 * 119.95086 * 0.28266 * 13 12 11 29 29 H 0.97006 * 119.99333 * 359.97438 * 1 2 3 30 30 H 1.07992 * 119.97909 * 359.97317 * 10 9 7 31 31 H 1.08002 * 119.79175 * 180.02562 * 11 10 9 32 32 H 1.08004 * 119.81839 * 179.97438 * 12 11 10 33 33 H 0.97000 * 119.99635 * 359.97438 * 16 14 13 34 34 H 1.09001 * 109.23615 * 306.23096 * 19 17 16 35 35 H 1.09008 * 109.23161 * 186.81713 * 19 17 16 36 36 H 1.08997 * 109.79544 * 176.97016 * 20 19 17 37 37 H 1.09007 * 109.79177 * 297.81955 * 20 19 17 38 38 H 1.09003 * 110.61663 * 280.93781 * 22 21 20 39 39 H 1.09004 * 110.61614 * 43.76082 * 22 21 20 40 40 H 1.09000 * 110.35127 * 94.86595 * 23 22 21 41 41 H 1.09003 * 110.35212 * 217.14043 * 23 22 21 42 42 H 1.08999 * 110.49044 * 116.18577 * 24 23 22 43 43 H 1.08994 * 110.48940 * 238.70367 * 24 23 22 44 44 H 1.08994 * 109.84021 * 56.61245 * 27 25 21 45 45 H 1.09005 * 109.83510 * 177.57258 * 27 25 21 46 46 H 1.08004 * 120.20620 * 179.69731 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.4899 2.0463 -1.4000 5 1 1.4399 2.6526 0.7000 6 1 3.5399 1.4400 0.7001 7 6 2.0080 -1.2120 0.0005 8 1 3.0494 -1.2341 0.2853 9 6 1.3511 -2.4079 -0.3719 10 6 1.8275 -3.6500 0.0888 11 6 1.1860 -4.8127 -0.2760 12 6 0.0722 -4.7706 -1.0960 13 6 -0.4155 -3.5459 -1.5635 14 6 -1.6068 -3.5093 -2.4391 15 8 -2.0300 -2.4448 -2.8455 16 7 -2.2233 -4.6564 -2.7864 17 6 -3.4030 -4.6203 -3.6542 18 1 -3.9814 -3.7225 -3.4361 19 6 -2.9536 -4.5877 -5.1144 20 6 -2.2621 -5.9047 -5.4984 21 7 -3.1993 -6.9904 -5.2437 22 6 -2.7513 -8.3439 -5.6053 23 6 -3.7189 -9.2685 -4.8197 24 6 -4.2183 -8.4071 -3.6319 25 6 -3.4597 -7.0839 -3.7824 26 1 -2.5198 -7.1222 -3.2317 27 6 -4.2707 -5.8590 -3.3826 28 6 0.2236 -2.3632 -1.2089 29 1 -0.4849 0.8402 0.0004 30 1 2.6969 -3.6911 0.7281 31 1 1.5546 -5.7634 0.0801 32 1 -0.4232 -5.6884 -1.3765 33 1 -1.8853 -5.5059 -2.4624 34 1 -2.2570 -3.7616 -5.2574 35 1 -3.8232 -4.4389 -5.7545 36 1 -1.9957 -5.8873 -6.5552 37 1 -1.3659 -6.0412 -4.8932 38 1 -2.8509 -8.5074 -6.6783 39 1 -1.7209 -8.5046 -5.2880 40 1 -4.5563 -9.5650 -5.4513 41 1 -3.1892 -10.1481 -4.4536 42 1 -5.2930 -8.2412 -3.7062 43 1 -3.9716 -8.8849 -2.6838 44 1 -5.1833 -5.8096 -3.9765 45 1 -4.5204 -5.9105 -2.3228 46 1 -0.1465 -1.4156 -1.5715 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000373928980.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:35:16 Heat of formation + Delta-G solvation = -37.039562 kcal Electronic energy + Delta-G solvation = -26313.733503 eV Core-core repulsion = 22780.237767 eV Total energy + Delta-G solvation = -3533.495735 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.62308 -40.33132 -38.82380 -36.74510 -35.63373 -34.04981 -32.89244 -31.63857 -31.27439 -29.97313 -28.07752 -27.18276 -24.66743 -24.03110 -22.87458 -22.50389 -21.69210 -21.48411 -20.15782 -19.55457 -18.02564 -17.18604 -16.97402 -16.72773 -16.46740 -16.38373 -16.02449 -15.72929 -15.34479 -15.11070 -14.88101 -14.47640 -14.30934 -14.27325 -13.88403 -13.52423 -13.48311 -13.37710 -12.99943 -12.83701 -12.75444 -12.55061 -12.35736 -12.20499 -12.17977 -11.95374 -11.89524 -11.59568 -11.53281 -11.40874 -11.29793 -11.10088 -10.77067 -10.13799 -9.49941 -9.41572 -9.37708 -8.68363 -6.40171 0.36556 0.98668 1.35196 1.46696 1.49735 2.09521 2.17970 2.23973 2.77043 3.00048 3.53568 3.61119 3.68498 3.93890 3.96436 4.01260 4.13316 4.16588 4.30728 4.32522 4.38699 4.42584 4.55039 4.65741 4.68127 4.76952 4.82992 4.86201 4.91815 4.99607 5.03457 5.06653 5.08973 5.11090 5.13752 5.17762 5.29563 5.32993 5.35144 5.49217 5.56860 5.84236 5.90366 5.96415 6.03258 6.21064 6.26402 6.49183 6.66477 6.85975 6.92662 7.31028 8.28400 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.023864 B = 0.003125 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.043316 B = 8956.461714 C = 9533.476775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.029 3.971 3 Si 0.983 3.017 4 H -0.266 1.266 5 H -0.269 1.269 6 H -0.250 1.250 7 C -0.497 4.497 8 H 0.084 0.916 9 C 0.068 3.932 10 C -0.217 4.217 11 C -0.095 4.095 12 C -0.199 4.199 13 C -0.139 4.139 14 C 0.561 3.439 15 O -0.587 6.587 16 N -0.708 5.708 17 C 0.141 3.859 18 H 0.065 0.935 19 C -0.118 4.118 20 C 0.063 3.937 21 N -0.526 5.526 22 C 0.036 3.964 23 C -0.116 4.116 24 C -0.113 4.113 25 C 0.057 3.943 26 H 0.044 0.956 27 C -0.100 4.100 28 C -0.131 4.131 29 H 0.287 0.713 30 H 0.109 0.891 31 H 0.138 0.862 32 H 0.130 0.870 33 H 0.406 0.594 34 H 0.043 0.957 35 H 0.088 0.912 36 H 0.081 0.919 37 H 0.024 0.976 38 H 0.085 0.915 39 H 0.037 0.963 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.100 0.900 45 H 0.081 0.919 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.634 -17.139 -8.125 20.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.186 4.186 3 Si 0.804 3.196 4 H -0.191 1.191 5 H -0.194 1.194 6 H -0.173 1.173 7 C -0.526 4.526 8 H 0.102 0.898 9 C 0.066 3.934 10 C -0.237 4.237 11 C -0.112 4.112 12 C -0.219 4.219 13 C -0.142 4.142 14 C 0.351 3.649 15 O -0.469 6.469 16 N -0.361 5.361 17 C 0.036 3.964 18 H 0.083 0.917 19 C -0.157 4.157 20 C -0.065 4.065 21 N -0.251 5.251 22 C -0.091 4.091 23 C -0.154 4.154 24 C -0.151 4.151 25 C -0.051 4.051 26 H 0.062 0.938 27 C -0.138 4.138 28 C -0.151 4.151 29 H 0.097 0.903 30 H 0.127 0.873 31 H 0.156 0.844 32 H 0.148 0.852 33 H 0.244 0.756 34 H 0.062 0.938 35 H 0.107 0.893 36 H 0.100 0.900 37 H 0.042 0.958 38 H 0.103 0.897 39 H 0.055 0.945 40 H 0.097 0.903 41 H 0.098 0.902 42 H 0.098 0.902 43 H 0.098 0.902 44 H 0.118 0.882 45 H 0.100 0.900 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -8.595 -16.122 -8.731 20.249 hybrid contribution 1.358 0.859 0.607 1.718 sum -7.237 -15.262 -8.123 18.743 Atomic orbital electron populations 1.69896 1.09253 1.30624 1.35174 1.26872 0.95422 1.04999 0.91318 0.85181 0.79281 0.75771 0.79381 1.19143 1.19356 1.17319 1.19877 0.98558 0.92176 1.41995 0.89757 1.17953 0.91773 0.93935 0.89762 1.21403 1.03878 0.92747 1.05690 1.20906 0.95300 0.97726 0.97311 1.20773 1.00623 0.94919 1.05593 1.19806 0.96975 0.95483 1.01928 1.18726 0.83210 0.83688 0.79259 1.90667 1.67180 1.31805 1.57211 1.45947 1.30694 1.08265 1.51214 1.21132 0.85986 0.99901 0.89337 0.91659 1.21874 1.01283 0.96620 0.95902 1.21873 0.92951 0.90711 1.01012 1.63942 1.42913 1.03672 1.14570 1.22938 0.97177 0.87856 1.01157 1.22526 0.99013 0.97410 0.96447 1.22167 1.00732 0.93239 0.99001 1.22488 0.98004 0.95847 0.88811 0.93817 1.21747 0.98359 0.91063 1.02596 1.21438 0.98288 0.96378 0.99043 0.90288 0.87300 0.84414 0.85247 0.75602 0.93814 0.89311 0.90050 0.95775 0.89669 0.94515 0.90267 0.90249 0.90159 0.90175 0.88201 0.90007 0.88370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -46.44 10.96 21.83 0.24 -46.20 16 2 C 0.03 1.53 5.14 85.26 0.44 1.97 16 3 Si 0.98 40.00 29.59 68.60 2.03 42.03 16 4 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 5 H -0.27 -10.45 7.11 99.48 0.71 -9.75 16 6 H -0.25 -9.56 7.11 99.48 0.71 -8.85 16 7 C -0.50 -27.28 9.05 23.47 0.21 -27.06 16 8 H 0.08 4.36 7.91 -2.92 -0.02 4.34 16 9 C 0.07 3.73 5.57 -21.32 -0.12 3.61 16 10 C -0.22 -10.22 9.78 22.77 0.22 -10.00 16 11 C -0.09 -3.77 10.01 22.18 0.22 -3.55 16 12 C -0.20 -7.94 9.55 22.70 0.22 -7.73 16 13 C -0.14 -6.66 5.87 -20.14 -0.12 -6.78 16 14 C 0.56 25.05 7.73 86.80 0.67 25.73 16 15 O -0.59 -30.93 15.98 -3.89 -0.06 -30.99 16 16 N -0.71 -22.92 4.58 -444.62 -2.04 -24.96 16 17 C 0.14 3.91 2.75 45.15 0.12 4.03 16 18 H 0.07 2.14 7.54 -2.39 -0.02 2.12 16 19 C -0.12 -3.13 5.67 30.74 0.17 -2.95 16 20 C 0.06 1.44 5.74 86.75 0.50 1.93 16 21 N -0.53 -10.09 4.84 -864.15 -4.18 -14.27 16 22 C 0.04 0.56 6.71 87.02 0.58 1.15 16 23 C -0.12 -1.39 7.05 32.03 0.23 -1.17 16 24 C -0.11 -1.50 6.65 31.36 0.21 -1.29 16 25 C 0.06 1.02 2.37 44.40 0.11 1.12 16 26 H 0.04 0.86 6.41 -2.39 -0.02 0.84 16 27 C -0.10 -1.97 5.30 30.56 0.16 -1.81 16 28 C -0.13 -7.36 8.24 23.01 0.19 -7.18 16 29 H 0.29 14.88 8.30 -92.70 -0.77 14.12 16 30 H 0.11 4.71 8.06 -2.91 -0.02 4.69 16 31 H 0.14 4.27 8.06 -2.91 -0.02 4.25 16 32 H 0.13 3.99 6.38 -2.91 -0.02 3.97 16 33 H 0.41 11.18 5.00 -92.71 -0.46 10.72 16 34 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.09 2.10 8.14 -2.38 -0.02 2.08 16 36 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.02 0.61 7.80 -2.38 -0.02 0.59 16 38 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.04 0.60 8.14 -2.38 -0.02 0.58 16 40 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.08 0.99 8.00 -2.39 -0.02 0.97 16 43 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 44 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 45 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 46 H 0.10 6.16 5.75 -2.91 -0.02 6.15 16 Total: -1.00 -68.05 361.03 0.53 -67.52 By element: Atomic # 1 Polarization: 36.32 SS G_CDS: 0.52 Total: 36.83 kcal Atomic # 6 Polarization: -33.99 SS G_CDS: 4.02 Total: -29.97 kcal Atomic # 7 Polarization: -79.45 SS G_CDS: -5.98 Total: -85.43 kcal Atomic # 8 Polarization: -30.93 SS G_CDS: -0.06 Total: -30.99 kcal Atomic # 14 Polarization: 40.00 SS G_CDS: 2.03 Total: 42.03 kcal Total: -68.05 0.53 -67.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000373928980.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.485 kcal (2) G-P(sol) polarization free energy of solvation -68.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds