Wall clock time and date at job start Tue Mar 31 2020 11:00:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.52995 * 112.85590 * 346.16295 * 3 2 1 5 5 N 1.46897 * 109.47107 * 48.80466 * 4 3 2 6 6 C 1.46899 * 111.00401 * 180.02562 * 5 4 3 7 7 C 1.50695 * 109.47480 * 179.97438 * 6 5 4 8 8 C 1.38288 * 119.97360 * 269.97876 * 7 6 5 9 9 C 1.38239 * 120.11592 * 180.02562 * 8 7 6 10 10 C 1.38170 * 120.05181 * 359.97438 * 9 8 7 11 11 C 1.38705 * 119.94752 * 0.02562 * 10 9 8 12 12 O 1.35898 * 120.06118 * 179.97438 * 11 10 9 13 13 C 1.42902 * 116.99730 * 0.02562 * 12 11 10 14 14 C 1.53000 * 109.47419 * 179.97438 * 13 12 11 15 15 C 1.50700 * 109.47460 * 179.97438 * 14 13 12 16 16 H 1.08002 * 119.99737 * 0.02562 * 15 14 13 17 17 C 1.37873 * 120.00211 * 180.02562 * 15 14 13 18 18 N 1.31523 * 120.00090 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00288 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.46962 * 60.00021 * 19 17 15 21 21 H 1.48499 * 109.47167 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.46653 * 299.99888 * 19 17 15 23 23 C 1.38121 * 119.97430 * 89.99974 * 7 6 5 24 24 C 1.53781 * 113.68877 * 117.43287 * 3 2 1 25 25 C 1.53781 * 87.08406 * 89.12290 * 24 3 2 26 26 C 1.53785 * 113.61148 * 214.96445 * 3 2 1 27 27 H 1.09001 * 109.47302 * 288.80291 * 4 3 2 28 28 H 1.08997 * 109.47372 * 168.80211 * 4 3 2 29 29 H 1.00903 * 111.00468 * 56.04478 * 5 4 3 30 30 H 1.09001 * 109.47123 * 59.99471 * 6 5 4 31 31 H 1.09000 * 109.47036 * 299.99922 * 6 5 4 32 32 H 1.08000 * 119.94097 * 0.02562 * 8 7 6 33 33 H 1.07997 * 119.98080 * 179.97438 * 9 8 7 34 34 H 1.08005 * 120.02538 * 180.02562 * 10 9 8 35 35 H 1.09000 * 109.47521 * 300.00502 * 13 12 11 36 36 H 1.09007 * 109.47162 * 60.00566 * 13 12 11 37 37 H 1.09000 * 109.47211 * 300.00725 * 14 13 12 38 38 H 1.09007 * 109.46464 * 60.00172 * 14 13 12 39 39 H 0.96999 * 120.00141 * 179.97438 * 18 17 15 40 40 H 1.08002 * 120.02567 * 0.24819 * 23 7 6 41 41 H 1.09003 * 113.61450 * 203.66769 * 24 3 2 42 42 H 1.08995 * 113.61600 * 334.57793 * 24 3 2 43 43 H 1.08995 * 113.61714 * 270.88713 * 25 24 3 44 44 H 1.08995 * 113.61851 * 139.98043 * 25 24 3 45 45 H 1.09003 * 113.61325 * 25.35275 * 26 3 2 46 46 H 1.09000 * 113.61649 * 156.25610 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.2028 -1.3680 0.3372 5 7 2.5529 -2.3996 -0.4821 6 6 3.0996 -3.7302 -0.1843 7 6 2.4098 -4.7601 -1.0413 8 6 1.2633 -5.3836 -0.5841 9 6 0.6285 -6.3291 -1.3676 10 6 1.1381 -6.6532 -2.6104 11 6 2.2880 -6.0292 -3.0713 12 8 2.7915 -6.3465 -4.2930 13 6 2.0851 -7.3314 -5.0500 14 6 2.7958 -7.5540 -6.3866 15 6 2.0511 -8.5931 -7.1846 16 1 1.1598 -9.0488 -6.7792 17 6 2.5076 -8.9619 -8.4322 18 7 3.5933 -8.4073 -8.9256 19 14 1.5842 -10.2494 -9.4217 20 1 0.1974 -9.7810 -9.6713 21 1 2.2748 -10.4663 -10.7183 22 1 1.5469 -11.5247 -8.6618 23 6 2.9235 -5.0808 -2.2827 24 6 3.2255 0.6497 -1.2499 25 6 3.1719 1.9840 -0.4872 26 6 3.2234 1.1557 0.8075 27 1 3.0388 -1.5854 1.3926 28 1 4.2729 -1.3602 0.1298 29 1 2.6354 -2.1862 -1.4648 30 1 2.9346 -3.9638 0.8675 31 1 4.1690 -3.7391 -0.3949 32 1 0.8632 -5.1314 0.3868 33 1 -0.2666 -6.8150 -1.0082 34 1 0.6416 -7.3917 -3.2223 35 1 2.0576 -8.2676 -4.4924 36 1 1.0670 -6.9876 -5.2332 37 1 2.8229 -6.6177 -6.9440 38 1 3.8140 -7.8976 -6.2038 39 1 3.9147 -8.6670 -9.8032 40 1 3.8214 -4.5967 -2.6376 41 1 4.2388 0.3092 -1.4633 42 1 2.5750 0.6201 -2.1239 43 1 2.2362 2.5265 -0.6215 44 1 4.0510 2.6100 -0.6402 45 1 2.5711 1.5345 1.5944 46 1 4.2360 0.9535 1.1565 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000418140130.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:10 Heat of formation + Delta-G solvation = 2.724958 kcal Electronic energy + Delta-G solvation = -24313.017504 eV Core-core repulsion = 20781.246087 eV Total energy + Delta-G solvation = -3531.771416 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.11537 -40.73596 -38.82437 -36.76306 -36.39964 -35.45999 -32.61473 -32.44386 -30.63053 -29.10260 -27.07934 -26.66827 -25.82259 -23.88086 -23.39899 -23.31695 -21.85920 -21.53616 -19.19070 -18.22751 -17.61171 -17.05053 -16.95233 -16.86938 -16.65062 -16.37320 -15.95492 -15.67188 -15.58714 -15.07431 -14.67069 -14.37407 -14.33609 -14.25051 -14.14657 -13.79163 -13.61188 -13.44627 -13.12635 -13.04454 -12.96775 -12.78025 -12.59176 -12.56801 -12.35753 -12.28684 -11.87479 -11.66440 -11.60601 -11.58832 -11.41202 -11.21950 -11.11598 -10.62600 -9.86698 -9.32147 -9.09999 -8.27812 -6.41549 0.33616 0.53527 1.39843 1.43726 1.51705 1.79395 1.88838 2.25977 2.50109 2.73998 2.93592 3.06312 3.32769 3.60569 3.79440 3.85850 3.89906 3.94873 3.96534 4.16181 4.22738 4.24596 4.36646 4.43479 4.50497 4.57350 4.69758 4.72600 4.76166 4.79895 4.84181 4.90882 4.92551 5.10882 5.12711 5.15526 5.19526 5.30035 5.42141 5.45402 5.46959 5.51589 5.63926 5.67366 5.88868 6.03915 6.07377 6.38910 6.55899 6.70320 6.72656 7.28389 8.85005 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.018983 B = 0.002082 C = 0.001982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.684334 B =13446.802731 C =14124.206997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C 0.263 3.737 3 C -0.002 4.002 4 C 0.079 3.921 5 N -0.705 5.705 6 C 0.110 3.890 7 C -0.046 4.046 8 C -0.145 4.145 9 C -0.084 4.084 10 C -0.225 4.225 11 C 0.106 3.894 12 O -0.340 6.340 13 C 0.085 3.915 14 C 0.030 3.970 15 C -0.548 4.548 16 H 0.069 0.931 17 C 0.002 3.998 18 N -0.930 5.930 19 Si 0.975 3.025 20 H -0.265 1.265 21 H -0.281 1.281 22 H -0.264 1.264 23 C -0.160 4.160 24 C -0.122 4.122 25 C -0.146 4.146 26 C -0.104 4.104 27 H 0.090 0.910 28 H 0.083 0.917 29 H 0.344 0.656 30 H 0.097 0.903 31 H 0.058 0.942 32 H 0.142 0.858 33 H 0.144 0.856 34 H 0.124 0.876 35 H 0.059 0.941 36 H 0.056 0.944 37 H -0.001 1.001 38 H 0.000 1.000 39 H 0.267 0.733 40 H 0.132 0.868 41 H 0.124 0.876 42 H 0.060 0.940 43 H 0.064 0.936 44 H 0.096 0.904 45 H 0.072 0.928 46 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.018 17.727 23.844 29.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.172 5.172 2 C -0.054 4.054 3 C -0.006 4.006 4 C -0.050 4.050 5 N -0.336 5.336 6 C -0.018 4.018 7 C -0.046 4.046 8 C -0.163 4.163 9 C -0.102 4.102 10 C -0.244 4.244 11 C 0.060 3.940 12 O -0.254 6.254 13 C 0.011 3.989 14 C -0.008 4.008 15 C -0.586 4.586 16 H 0.087 0.913 17 C -0.197 4.197 18 N -0.569 5.569 19 Si 0.799 3.201 20 H -0.190 1.190 21 H -0.206 1.206 22 H -0.188 1.188 23 C -0.179 4.179 24 C -0.161 4.161 25 C -0.183 4.183 26 C -0.143 4.143 27 H 0.108 0.892 28 H 0.101 0.899 29 H 0.162 0.838 30 H 0.115 0.885 31 H 0.077 0.923 32 H 0.159 0.841 33 H 0.162 0.838 34 H 0.141 0.859 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.017 0.983 38 H 0.018 0.982 39 H 0.076 0.924 40 H 0.150 0.850 41 H 0.142 0.858 42 H 0.078 0.922 43 H 0.083 0.917 44 H 0.114 0.886 45 H 0.091 0.909 46 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 1.041 17.734 24.034 29.886 hybrid contribution 0.416 -0.904 -1.608 1.891 sum 1.457 16.830 22.426 28.077 Atomic orbital electron populations 1.81220 1.14715 1.10980 1.10315 1.28735 0.94553 0.90620 0.91450 1.19574 0.80532 0.97961 1.02501 1.22058 0.97209 0.86704 0.99039 1.60454 1.60431 1.01550 1.11201 1.20828 0.96122 0.85904 0.98951 1.19762 0.95243 0.96575 0.93035 1.21159 0.96095 0.97803 1.01262 1.21210 0.99610 0.96742 0.92589 1.21479 0.98356 1.04785 0.99758 1.19515 0.93586 0.95522 0.85343 1.86072 1.53533 1.58368 1.27456 1.22838 0.95249 0.88943 0.91892 1.18952 0.95590 0.96084 0.90140 1.21360 1.11844 1.23014 1.02354 0.91289 1.26036 0.95920 0.98923 0.98792 1.70109 1.23983 1.44151 1.18617 0.85346 0.78581 0.78801 0.77396 1.18963 1.20638 1.18840 1.20483 1.02541 0.99979 0.94869 1.23166 1.02440 0.95792 0.94688 1.22906 1.02969 0.96537 0.95887 1.23054 1.02975 0.91674 0.96602 0.89161 0.89928 0.83845 0.88469 0.92343 0.84061 0.83806 0.85855 0.92326 0.92589 0.98303 0.98168 0.92388 0.85030 0.85755 0.92152 0.91712 0.88554 0.90917 0.84961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -13.45 18.54 20.00 0.37 -13.08 16 2 C 0.26 5.11 13.61 89.44 1.22 6.32 16 3 C 0.00 -0.02 1.03 -53.46 -0.06 -0.07 16 4 C 0.08 0.61 5.14 86.30 0.44 1.06 16 5 N -0.70 -10.20 5.89 -517.96 -3.05 -13.25 16 6 C 0.11 1.61 5.81 85.56 0.50 2.10 16 7 C -0.05 -1.03 5.39 -19.88 -0.11 -1.14 16 8 C -0.14 -3.32 9.70 22.28 0.22 -3.10 16 9 C -0.08 -2.15 10.04 22.25 0.22 -1.92 16 10 C -0.22 -7.18 9.04 22.37 0.20 -6.98 16 11 C 0.11 3.74 6.69 22.51 0.15 3.89 16 12 O -0.34 -14.59 10.14 -92.40 -0.94 -15.52 16 13 C 0.09 3.82 4.68 71.98 0.34 4.15 16 14 C 0.03 1.63 5.34 29.85 0.16 1.79 16 15 C -0.55 -31.26 9.11 25.60 0.23 -31.02 16 16 H 0.07 3.68 7.74 -2.91 -0.02 3.66 16 17 C 0.00 0.12 5.46 84.65 0.46 0.58 16 18 N -0.93 -56.67 13.29 21.45 0.28 -56.38 16 19 Si 0.98 43.75 29.54 68.60 2.03 45.78 16 20 H -0.26 -11.37 7.11 99.48 0.71 -10.67 16 21 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 22 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 23 C -0.16 -4.57 9.64 22.37 0.22 -4.35 16 24 C -0.12 -0.90 7.20 31.12 0.22 -0.67 16 25 C -0.15 -0.88 7.79 31.12 0.24 -0.64 16 26 C -0.10 -0.44 7.21 31.12 0.22 -0.22 16 27 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.08 0.23 7.94 -2.39 -0.02 0.21 16 29 H 0.34 5.46 8.72 -89.69 -0.78 4.68 16 30 H 0.10 1.16 8.08 -2.39 -0.02 1.14 16 31 H 0.06 0.70 8.09 -2.39 -0.02 0.68 16 32 H 0.14 2.59 8.06 -2.91 -0.02 2.57 16 33 H 0.14 2.92 8.06 -2.91 -0.02 2.90 16 34 H 0.12 3.96 6.30 -2.91 -0.02 3.94 16 35 H 0.06 2.48 7.66 -2.39 -0.02 2.46 16 36 H 0.06 2.40 7.66 -2.38 -0.02 2.38 16 37 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 38 H 0.00 -0.01 8.14 -2.38 -0.02 -0.03 16 39 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 40 H 0.13 3.46 8.06 -2.91 -0.02 3.44 16 41 H 0.12 0.37 7.96 -2.39 -0.02 0.35 16 42 H 0.06 0.68 8.09 -2.39 -0.02 0.66 16 43 H 0.06 0.62 8.13 -2.39 -0.02 0.60 16 44 H 0.10 0.28 8.14 -2.39 -0.02 0.26 16 45 H 0.07 0.42 8.08 -2.39 -0.02 0.40 16 46 H 0.13 -0.17 8.10 -2.39 -0.02 -0.19 16 Total: -1.00 -74.23 389.20 3.77 -70.46 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: 0.19 Total: 12.21 kcal Atomic # 6 Polarization: -35.10 SS G_CDS: 4.89 Total: -30.21 kcal Atomic # 7 Polarization: -80.32 SS G_CDS: -2.39 Total: -82.71 kcal Atomic # 8 Polarization: -14.59 SS G_CDS: -0.94 Total: -15.52 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -74.23 3.77 -70.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000418140130.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.187 kcal (2) G-P(sol) polarization free energy of solvation -74.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds