Wall clock time and date at job start Tue Mar 31 2020 11:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.37792 * 120.11151 * 2 1 4 4 C 1.38791 * 120.66723 * 180.02562 * 3 2 1 5 5 C 1.36662 * 120.52742 * 0.02562 * 4 3 2 6 6 C 1.39593 * 119.76352 * 359.67777 * 5 4 3 7 7 C 1.46493 * 134.03402 * 179.64420 * 6 5 4 8 8 C 1.50703 * 126.50121 * 0.73530 * 7 6 5 9 9 C 1.50701 * 109.47064 * 84.71144 * 8 7 6 10 10 O 1.21280 * 119.99781 * 0.02562 * 9 8 7 11 11 N 1.34780 * 119.99795 * 179.97438 * 9 8 7 12 12 C 1.46497 * 119.99566 * 180.02562 * 11 9 8 13 13 C 1.52997 * 109.46983 * 180.02562 * 12 11 9 14 14 C 1.53002 * 109.47143 * 300.00028 * 13 12 11 15 15 C 1.52996 * 109.47131 * 59.99859 * 13 12 11 16 16 C 1.50697 * 109.47466 * 180.02562 * 13 12 11 17 17 H 1.08006 * 119.99920 * 359.97438 * 16 13 12 18 18 C 1.37876 * 120.00428 * 180.02562 * 16 13 12 19 19 N 1.31520 * 119.99996 * 359.97438 * 18 16 13 20 20 Si 1.86805 * 120.00227 * 179.97438 * 18 16 13 21 21 H 1.48497 * 109.46792 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.46980 * 119.99883 * 20 18 16 23 23 H 1.48498 * 109.46996 * 239.99688 * 20 18 16 24 24 C 1.34234 * 106.99711 * 180.47420 * 7 6 5 25 25 N 1.36825 * 109.94080 * 0.23981 * 24 7 6 26 26 H 0.97002 * 125.06383 * 180.02562 * 25 24 7 27 27 C 1.37686 * 109.87612 * 0.02562 * 25 24 7 28 28 H 1.09000 * 109.47482 * 269.97981 * 1 2 3 29 29 H 1.09000 * 109.47290 * 29.98422 * 1 2 3 30 30 H 1.09003 * 109.47078 * 149.98037 * 1 2 3 31 31 H 1.07997 * 119.66589 * 0.03723 * 3 2 1 32 32 H 1.07993 * 119.73699 * 179.97438 * 4 3 2 33 33 H 1.08000 * 120.11779 * 179.97438 * 5 4 3 34 34 H 1.09002 * 109.47152 * 324.71236 * 8 7 6 35 35 H 1.09001 * 109.46980 * 204.71337 * 8 7 6 36 36 H 0.96995 * 120.00011 * 0.02562 * 11 9 8 37 37 H 1.09001 * 109.47487 * 300.00114 * 12 11 9 38 38 H 1.09002 * 109.47182 * 60.00342 * 12 11 9 39 39 H 1.09004 * 109.46930 * 59.99935 * 14 13 12 40 40 H 1.09000 * 109.47312 * 179.97438 * 14 13 12 41 41 H 1.09002 * 109.47067 * 300.00018 * 14 13 12 42 42 H 1.09001 * 109.46997 * 60.00426 * 15 13 12 43 43 H 1.09004 * 109.47552 * 180.02562 * 15 13 12 44 44 H 1.08996 * 109.47452 * 300.00000 * 15 13 12 45 45 H 0.96993 * 120.00405 * 179.97438 * 19 18 16 46 46 H 1.08007 * 125.03097 * 180.21878 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1920 0.0000 4 6 3.5861 1.2054 -0.0005 5 6 4.2916 0.0350 -0.0016 6 6 3.6116 -1.1841 0.0047 7 6 4.0353 -2.5864 -0.0010 8 6 5.4542 -3.0942 -0.0009 9 6 5.9690 -3.1465 1.4145 10 8 5.2538 -2.8055 2.3328 11 7 7.2236 -3.5732 1.6599 12 6 7.7238 -3.6246 3.0359 13 6 9.1643 -4.1400 3.0360 14 6 9.2042 -5.5426 2.4261 15 6 10.0426 -3.1991 2.2089 16 6 9.6787 -4.1934 4.4515 17 1 9.0419 -3.8898 5.2693 18 6 10.9625 -4.6291 4.7025 19 7 11.7382 -4.9984 3.7067 20 14 11.6003 -4.6947 6.4571 21 1 10.5397 -4.2302 7.3869 22 1 11.9775 -6.0908 6.7948 23 1 12.7906 -3.8158 6.5843 24 6 2.9200 -3.3333 -0.0003 25 7 1.8166 -2.5242 -0.0001 26 1 0.8977 -2.8350 0.0007 27 6 2.2047 -1.2032 -0.0012 28 1 -0.3634 -0.0004 1.0276 29 1 -0.3634 0.8901 -0.5136 30 1 -0.3633 -0.8898 -0.5142 31 1 1.6546 2.1252 0.0006 32 1 4.1126 2.1483 -0.0009 33 1 5.3715 0.0532 -0.0024 34 1 6.0799 -2.4241 -0.5905 35 1 5.4824 -4.0936 -0.4350 36 1 7.7954 -3.8462 0.9255 37 1 7.6958 -2.6252 3.4703 38 1 7.0978 -4.2946 3.6253 39 1 8.8320 -5.5043 1.4023 40 1 10.2306 -5.9096 2.4258 41 1 8.5785 -6.2129 3.0154 42 1 10.0143 -2.1998 2.6434 43 1 11.0689 -3.5665 2.2085 44 1 9.6706 -3.1608 1.1851 45 1 12.6415 -5.3045 3.8832 46 1 2.8969 -4.4131 -0.0003 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457992335.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:48 Heat of formation + Delta-G solvation = 3.122758 kcal Electronic energy + Delta-G solvation = -25543.698297 eV Core-core repulsion = 22011.944130 eV Total energy + Delta-G solvation = -3531.754167 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.35495 -39.04253 -37.12268 -36.28068 -33.64046 -33.17197 -31.68440 -30.70446 -29.32139 -27.34800 -26.85517 -25.69632 -25.44391 -24.48490 -22.09842 -21.87114 -20.44448 -18.97677 -18.58177 -17.80080 -16.75901 -16.31320 -15.70516 -15.46020 -14.98655 -14.76263 -14.69678 -14.44793 -14.33110 -13.47162 -13.37581 -13.24062 -13.02563 -12.88098 -12.69343 -12.49423 -12.37219 -12.13439 -11.83211 -11.48043 -11.38084 -11.24308 -11.17187 -10.85302 -10.80493 -10.64103 -10.35233 -10.18136 -9.60091 -9.56141 -9.39160 -9.09269 -8.74440 -8.40851 -8.22634 -8.18238 -7.56154 -6.00167 -4.09860 1.11780 1.65845 2.62644 3.09595 3.21768 3.28344 3.36910 3.41891 3.83975 4.07362 4.42980 4.65128 4.71316 4.84113 4.98776 5.11703 5.18389 5.26386 5.26698 5.35681 5.46220 5.54266 5.56350 5.61046 5.78233 5.89424 5.94011 6.15857 6.30068 6.38618 6.51309 6.55095 6.62253 6.70066 6.79357 6.84490 6.85846 6.98255 7.05500 7.12902 7.17495 7.39729 7.49669 7.58755 7.72012 8.04013 8.13413 8.24004 8.41978 8.85263 8.92490 9.55894 11.01234 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.026092 B = 0.002546 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.861597 B =10995.007626 C =11249.086342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.102 4.102 3 C -0.105 4.105 4 C -0.146 4.146 5 C -0.069 4.069 6 C -0.085 4.085 7 C -0.143 4.143 8 C -0.068 4.068 9 C 0.502 3.498 10 O -0.543 6.543 11 N -0.721 5.721 12 C 0.134 3.866 13 C 0.055 3.945 14 C -0.130 4.130 15 C -0.131 4.131 16 C -0.504 4.504 17 H 0.057 0.943 18 C 0.065 3.935 19 N -0.886 5.886 20 Si 0.892 3.108 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.284 1.284 24 C 0.059 3.941 25 N -0.594 5.594 26 H 0.413 0.587 27 C 0.098 3.902 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.055 0.945 31 H 0.121 0.879 32 H 0.120 0.880 33 H 0.119 0.881 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.397 0.603 37 H 0.052 0.948 38 H 0.052 0.948 39 H 0.007 0.993 40 H 0.085 0.915 41 H 0.026 0.974 42 H 0.026 0.974 43 H 0.085 0.915 44 H 0.007 0.993 45 H 0.259 0.741 46 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.026 6.077 -12.782 22.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.105 4.105 3 C -0.124 4.124 4 C -0.165 4.165 5 C -0.088 4.088 6 C -0.090 4.090 7 C -0.151 4.151 8 C -0.109 4.109 9 C 0.287 3.713 10 O -0.420 6.420 11 N -0.372 5.372 12 C 0.011 3.989 13 C 0.055 3.945 14 C -0.188 4.188 15 C -0.188 4.188 16 C -0.543 4.543 17 H 0.075 0.925 18 C -0.136 4.136 19 N -0.525 5.525 20 Si 0.720 3.280 21 H -0.198 1.198 22 H -0.211 1.211 23 H -0.211 1.211 24 C -0.067 4.067 25 N -0.197 5.197 26 H 0.249 0.751 27 C -0.009 4.009 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.074 0.926 31 H 0.139 0.861 32 H 0.138 0.862 33 H 0.137 0.863 34 H 0.115 0.885 35 H 0.115 0.885 36 H 0.231 0.769 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.026 0.974 40 H 0.103 0.897 41 H 0.045 0.955 42 H 0.045 0.955 43 H 0.103 0.897 44 H 0.026 0.974 45 H 0.069 0.931 46 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -18.457 6.171 -12.126 22.929 hybrid contribution 0.335 -0.409 0.715 0.889 sum -18.122 5.762 -11.410 22.176 Atomic orbital electron populations 1.20662 0.91586 1.02252 1.02012 1.18810 0.95101 0.90299 1.06278 1.20642 0.94146 0.96186 1.01425 1.20572 0.93951 0.97799 1.04188 1.20272 0.99571 0.90641 0.98311 1.18987 0.91757 0.93095 1.05162 1.19592 0.93403 0.91041 1.11035 1.19980 0.92775 1.02783 0.95360 1.20567 0.82042 0.77727 0.90916 1.90678 1.56860 1.48168 1.46326 1.46323 1.13789 1.66024 1.11103 1.21653 0.96937 1.00238 0.80080 1.18353 0.87982 0.92167 0.96015 1.21827 1.03295 0.98560 0.95133 1.21825 1.03849 0.98280 0.94887 1.21042 0.98223 1.43522 0.91474 0.92456 1.24882 0.96721 0.94992 0.96965 1.69813 1.08108 1.44466 1.30128 0.86532 0.78839 0.77577 0.85045 1.19774 1.21091 1.21065 1.21513 0.85088 0.96103 1.04028 1.41595 1.08258 1.04066 1.65783 0.75090 1.18003 0.93606 0.84546 1.04705 0.91488 0.91345 0.92620 0.86096 0.86185 0.86285 0.88543 0.88538 0.76856 0.92960 0.92991 0.97430 0.89658 0.95518 0.95484 0.89656 0.97413 0.93101 0.81456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.86 10.02 36.00 0.36 -0.50 16 2 C -0.10 -1.16 5.89 -104.47 -0.62 -1.77 16 3 C -0.10 -1.15 9.67 -39.54 -0.38 -1.54 16 4 C -0.15 -1.74 9.97 -39.95 -0.40 -2.14 16 5 C -0.07 -0.95 10.05 -39.65 -0.40 -1.35 16 6 C -0.09 -1.24 6.35 -105.14 -0.67 -1.91 16 7 C -0.14 -1.96 4.81 -102.71 -0.49 -2.45 16 8 C -0.07 -0.87 6.23 -29.03 -0.18 -1.05 16 9 C 0.50 8.73 7.82 -10.98 -0.09 8.64 16 10 O -0.54 -11.75 16.03 5.56 0.09 -11.66 16 11 N -0.72 -12.78 4.96 -60.30 -0.30 -13.08 16 12 C 0.13 2.88 4.50 -4.04 -0.02 2.86 16 13 C 0.06 1.29 0.50 -155.66 -0.08 1.21 16 14 C -0.13 -2.93 8.08 37.16 0.30 -2.63 16 15 C -0.13 -2.95 8.08 37.16 0.30 -2.65 16 16 C -0.50 -13.32 8.01 -34.44 -0.28 -13.59 16 17 H 0.06 1.54 7.74 -52.48 -0.41 1.14 16 18 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 19 N -0.89 -23.69 9.36 55.43 0.52 -23.17 16 20 Si 0.89 20.87 29.54 -169.99 -5.02 15.85 16 21 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 24 C 0.06 0.67 11.73 -16.74 -0.20 0.47 16 25 N -0.59 -6.32 6.07 -10.65 -0.06 -6.39 16 26 H 0.41 3.02 8.87 -40.82 -0.36 2.65 16 27 C 0.10 1.27 6.95 -83.99 -0.58 0.69 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.45 8.09 -51.93 -0.42 0.03 16 30 H 0.05 0.38 7.99 -51.93 -0.42 -0.04 16 31 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 32 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 33 H 0.12 1.54 8.06 -52.49 -0.42 1.11 16 34 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.40 6.23 6.16 -40.82 -0.25 5.98 16 37 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.05 1.19 8.14 -51.93 -0.42 0.76 16 39 H 0.01 0.13 6.86 -51.93 -0.36 -0.22 16 40 H 0.08 2.12 6.07 -51.93 -0.32 1.81 16 41 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 43 H 0.08 2.13 6.07 -51.93 -0.32 1.81 16 44 H 0.01 0.14 6.86 -51.93 -0.36 -0.22 16 45 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 46 H 0.17 1.40 8.06 -52.48 -0.42 0.98 16 LS Contribution 373.35 15.07 5.63 5.63 Total: -1.00 -31.90 373.35 -9.64 -41.54 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: -6.98 Total: 7.35 kcal Atomic # 6 Polarization: -12.56 SS G_CDS: -3.51 Total: -16.07 kcal Atomic # 7 Polarization: -42.79 SS G_CDS: 0.15 Total: -42.63 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: 0.09 Total: -11.66 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.90 -9.64 -41.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457992335.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.665 kcal (2) G-P(sol) polarization free energy of solvation -31.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds