Wall clock time and date at job start Tue Mar 31 2020 11:44:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.37792 * 120.11151 * 2 1 4 4 C 1.38791 * 120.66723 * 180.02562 * 3 2 1 5 5 C 1.36662 * 120.52742 * 0.02562 * 4 3 2 6 6 C 1.39593 * 119.76352 * 359.67777 * 5 4 3 7 7 C 1.46493 * 134.03402 * 179.64420 * 6 5 4 8 8 C 1.50703 * 126.50121 * 0.73530 * 7 6 5 9 9 C 1.50701 * 109.47064 * 84.71144 * 8 7 6 10 10 O 1.21280 * 119.99781 * 0.02562 * 9 8 7 11 11 N 1.34780 * 119.99795 * 179.97438 * 9 8 7 12 12 C 1.46497 * 119.99566 * 180.02562 * 11 9 8 13 13 C 1.52997 * 109.46983 * 180.02562 * 12 11 9 14 14 C 1.53002 * 109.47143 * 300.00028 * 13 12 11 15 15 C 1.52996 * 109.47131 * 59.99859 * 13 12 11 16 16 C 1.50697 * 109.47466 * 180.02562 * 13 12 11 17 17 H 1.08006 * 119.99920 * 359.97438 * 16 13 12 18 18 C 1.37876 * 120.00428 * 180.02562 * 16 13 12 19 19 N 1.31520 * 119.99996 * 359.97438 * 18 16 13 20 20 Si 1.86805 * 120.00227 * 179.97438 * 18 16 13 21 21 H 1.48497 * 109.46792 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.46980 * 119.99883 * 20 18 16 23 23 H 1.48498 * 109.46996 * 239.99688 * 20 18 16 24 24 C 1.34234 * 106.99711 * 180.47420 * 7 6 5 25 25 N 1.36825 * 109.94080 * 0.23981 * 24 7 6 26 26 H 0.97002 * 125.06383 * 180.02562 * 25 24 7 27 27 C 1.37686 * 109.87612 * 0.02562 * 25 24 7 28 28 H 1.09000 * 109.47482 * 269.97981 * 1 2 3 29 29 H 1.09000 * 109.47290 * 29.98422 * 1 2 3 30 30 H 1.09003 * 109.47078 * 149.98037 * 1 2 3 31 31 H 1.07997 * 119.66589 * 0.03723 * 3 2 1 32 32 H 1.07993 * 119.73699 * 179.97438 * 4 3 2 33 33 H 1.08000 * 120.11779 * 179.97438 * 5 4 3 34 34 H 1.09002 * 109.47152 * 324.71236 * 8 7 6 35 35 H 1.09001 * 109.46980 * 204.71337 * 8 7 6 36 36 H 0.96995 * 120.00011 * 0.02562 * 11 9 8 37 37 H 1.09001 * 109.47487 * 300.00114 * 12 11 9 38 38 H 1.09002 * 109.47182 * 60.00342 * 12 11 9 39 39 H 1.09004 * 109.46930 * 59.99935 * 14 13 12 40 40 H 1.09000 * 109.47312 * 179.97438 * 14 13 12 41 41 H 1.09002 * 109.47067 * 300.00018 * 14 13 12 42 42 H 1.09001 * 109.46997 * 60.00426 * 15 13 12 43 43 H 1.09004 * 109.47552 * 180.02562 * 15 13 12 44 44 H 1.08996 * 109.47452 * 300.00000 * 15 13 12 45 45 H 0.96993 * 120.00405 * 179.97438 * 19 18 16 46 46 H 1.08007 * 125.03097 * 180.21878 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1920 0.0000 4 6 3.5861 1.2054 -0.0005 5 6 4.2916 0.0350 -0.0016 6 6 3.6116 -1.1841 0.0047 7 6 4.0353 -2.5864 -0.0010 8 6 5.4542 -3.0942 -0.0009 9 6 5.9690 -3.1465 1.4145 10 8 5.2538 -2.8055 2.3328 11 7 7.2236 -3.5732 1.6599 12 6 7.7238 -3.6246 3.0359 13 6 9.1643 -4.1400 3.0360 14 6 9.2042 -5.5426 2.4261 15 6 10.0426 -3.1991 2.2089 16 6 9.6787 -4.1934 4.4515 17 1 9.0419 -3.8898 5.2693 18 6 10.9625 -4.6291 4.7025 19 7 11.7382 -4.9984 3.7067 20 14 11.6003 -4.6947 6.4571 21 1 10.5397 -4.2302 7.3869 22 1 11.9775 -6.0908 6.7948 23 1 12.7906 -3.8158 6.5843 24 6 2.9200 -3.3333 -0.0003 25 7 1.8166 -2.5242 -0.0001 26 1 0.8977 -2.8350 0.0007 27 6 2.2047 -1.2032 -0.0012 28 1 -0.3634 -0.0004 1.0276 29 1 -0.3634 0.8901 -0.5136 30 1 -0.3633 -0.8898 -0.5142 31 1 1.6546 2.1252 0.0006 32 1 4.1126 2.1483 -0.0009 33 1 5.3715 0.0532 -0.0024 34 1 6.0799 -2.4241 -0.5905 35 1 5.4824 -4.0936 -0.4350 36 1 7.7954 -3.8462 0.9255 37 1 7.6958 -2.6252 3.4703 38 1 7.0978 -4.2946 3.6253 39 1 8.8320 -5.5043 1.4023 40 1 10.2306 -5.9096 2.4258 41 1 8.5785 -6.2129 3.0154 42 1 10.0143 -2.1998 2.6434 43 1 11.0689 -3.5665 2.2085 44 1 9.6706 -3.1608 1.1851 45 1 12.6415 -5.3045 3.8832 46 1 2.8969 -4.4131 -0.0003 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457992335.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:47 Heat of formation + Delta-G solvation = -14.938989 kcal Electronic energy + Delta-G solvation = -25544.481513 eV Core-core repulsion = 22011.944130 eV Total energy + Delta-G solvation = -3532.537383 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.23235 -40.50450 -38.15064 -37.87082 -34.90935 -34.53675 -32.93330 -32.22458 -30.21663 -28.48044 -27.60903 -27.53520 -27.34633 -26.14898 -22.94445 -22.74337 -21.84693 -20.58563 -19.83126 -18.68314 -18.24744 -17.57318 -17.18960 -16.65323 -16.39861 -16.30758 -16.00485 -15.51717 -15.20774 -14.85033 -14.67042 -14.54798 -14.28727 -13.99508 -13.83376 -13.76796 -13.48612 -13.21488 -13.12483 -13.07378 -12.75806 -12.61511 -12.56672 -12.33567 -12.23295 -12.14409 -12.13450 -11.67703 -11.45978 -11.23230 -10.83185 -10.66418 -10.39025 -10.23098 -9.84248 -9.08068 -8.44702 -8.01842 -6.17380 0.23054 0.74808 1.40560 1.44668 1.54137 1.68751 1.85816 2.30348 2.43021 2.65474 3.01775 3.21362 3.82179 3.89384 4.02436 4.14011 4.22284 4.35686 4.41318 4.45789 4.52108 4.55287 4.70938 4.72462 4.75275 4.78562 4.80218 5.01965 5.03042 5.06842 5.09229 5.10176 5.16028 5.22414 5.34071 5.41588 5.65629 5.67561 5.68330 5.69845 5.72598 5.81366 5.87762 6.17888 6.24248 6.29605 6.45359 6.76300 6.82315 6.87177 7.49036 7.50263 8.97033 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.026092 B = 0.002546 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.861597 B =10995.007626 C =11249.086342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.106 4.106 3 C -0.116 4.116 4 C -0.150 4.150 5 C -0.102 4.102 6 C -0.117 4.117 7 C -0.182 4.182 8 C -0.055 4.055 9 C 0.503 3.497 10 O -0.589 6.589 11 N -0.714 5.714 12 C 0.151 3.849 13 C 0.052 3.948 14 C -0.120 4.120 15 C -0.121 4.121 16 C -0.528 4.528 17 H 0.041 0.959 18 C 0.028 3.972 19 N -0.898 5.898 20 Si 0.944 3.056 21 H -0.277 1.277 22 H -0.280 1.280 23 H -0.281 1.281 24 C 0.070 3.930 25 N -0.584 5.584 26 H 0.428 0.572 27 C 0.077 3.923 28 H 0.071 0.929 29 H 0.084 0.916 30 H 0.067 0.933 31 H 0.148 0.852 32 H 0.137 0.863 33 H 0.114 0.886 34 H 0.112 0.888 35 H 0.132 0.868 36 H 0.409 0.591 37 H 0.029 0.971 38 H 0.034 0.966 39 H 0.041 0.959 40 H 0.062 0.938 41 H 0.017 0.983 42 H 0.015 0.985 43 H 0.062 0.938 44 H 0.040 0.960 45 H 0.260 0.740 46 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.554 5.841 -14.225 24.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.108 4.108 3 C -0.135 4.135 4 C -0.169 4.169 5 C -0.120 4.120 6 C -0.121 4.121 7 C -0.190 4.190 8 C -0.095 4.095 9 C 0.291 3.709 10 O -0.469 6.469 11 N -0.366 5.366 12 C 0.027 3.973 13 C 0.051 3.949 14 C -0.178 4.178 15 C -0.179 4.179 16 C -0.567 4.567 17 H 0.059 0.941 18 C -0.171 4.171 19 N -0.537 5.537 20 Si 0.770 3.230 21 H -0.202 1.202 22 H -0.206 1.206 23 H -0.207 1.207 24 C -0.057 4.057 25 N -0.188 5.188 26 H 0.267 0.733 27 C -0.030 4.030 28 H 0.090 0.910 29 H 0.103 0.897 30 H 0.086 0.914 31 H 0.166 0.834 32 H 0.155 0.845 33 H 0.132 0.868 34 H 0.130 0.870 35 H 0.150 0.850 36 H 0.247 0.753 37 H 0.048 0.952 38 H 0.052 0.948 39 H 0.060 0.940 40 H 0.081 0.919 41 H 0.036 0.964 42 H 0.034 0.966 43 H 0.081 0.919 44 H 0.059 0.941 45 H 0.070 0.930 46 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -19.996 5.929 -13.604 24.900 hybrid contribution 0.744 -0.299 1.165 1.414 sum -19.252 5.630 -12.439 23.602 Atomic orbital electron populations 1.20719 0.89125 1.03737 1.02695 1.19271 0.96997 0.89827 1.04726 1.21019 0.93959 0.97409 1.01078 1.20879 0.94787 0.97979 1.03255 1.20429 0.99647 0.91505 1.00436 1.19387 0.93037 0.93827 1.05874 1.19829 0.94383 0.91156 1.13619 1.19961 0.92559 1.05169 0.91784 1.21450 0.81042 0.75882 0.92574 1.90655 1.57963 1.49973 1.48351 1.46152 1.14436 1.66281 1.09723 1.21166 0.95819 0.98260 0.82096 1.18347 0.88787 0.93028 0.94743 1.21666 1.01775 0.97445 0.96926 1.21674 1.02456 0.97172 0.96593 1.21313 0.98560 1.43994 0.92833 0.94116 1.25438 0.96905 0.94865 0.99924 1.69909 1.08174 1.44444 1.31188 0.85731 0.78088 0.77624 0.81507 1.20214 1.20579 1.20671 1.22048 0.84666 0.97467 1.01568 1.41620 1.09068 1.03323 1.64777 0.73256 1.18294 0.93437 0.85834 1.05484 0.91036 0.89687 0.91404 0.83448 0.84538 0.86838 0.86990 0.85013 0.75348 0.95221 0.94804 0.94022 0.91949 0.96367 0.96599 0.91880 0.94125 0.93016 0.78297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.42 10.02 71.23 0.71 -0.70 16 2 C -0.11 -2.24 5.89 -19.77 -0.12 -2.35 16 3 C -0.12 -2.40 9.67 22.30 0.22 -2.19 16 4 C -0.15 -3.54 9.97 22.03 0.22 -3.32 16 5 C -0.10 -2.85 10.05 22.23 0.22 -2.63 16 6 C -0.12 -3.38 6.35 -20.20 -0.13 -3.50 16 7 C -0.18 -4.77 4.81 -18.62 -0.09 -4.86 16 8 C -0.05 -1.29 6.23 29.10 0.18 -1.10 16 9 C 0.50 17.07 7.82 87.66 0.69 17.76 16 10 O -0.59 -25.80 16.03 -3.03 -0.05 -25.85 16 11 N -0.71 -24.55 4.96 -463.06 -2.30 -26.85 16 12 C 0.15 6.58 4.50 86.38 0.39 6.97 16 13 C 0.05 2.41 0.50 -52.93 -0.03 2.38 16 14 C -0.12 -5.31 8.08 71.98 0.58 -4.73 16 15 C -0.12 -5.42 8.08 71.98 0.58 -4.84 16 16 C -0.53 -28.45 8.01 25.60 0.21 -28.24 16 17 H 0.04 2.26 7.74 -2.91 -0.02 2.24 16 18 C 0.03 1.51 5.15 84.65 0.44 1.95 16 19 N -0.90 -48.12 9.36 21.45 0.20 -47.92 16 20 Si 0.94 43.13 29.54 68.60 2.03 45.15 16 21 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 22 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 23 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 24 C 0.07 1.45 11.73 83.00 0.97 2.42 16 25 N -0.58 -11.35 6.07 -187.61 -1.14 -12.49 16 26 H 0.43 5.25 8.87 -92.71 -0.82 4.43 16 27 C 0.08 1.91 6.95 39.03 0.27 2.18 16 28 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.08 0.86 8.09 -2.39 -0.02 0.84 16 30 H 0.07 0.73 7.99 -2.39 -0.02 0.71 16 31 H 0.15 2.15 8.06 -2.91 -0.02 2.12 16 32 H 0.14 2.58 8.06 -2.91 -0.02 2.55 16 33 H 0.11 3.09 8.06 -2.91 -0.02 3.07 16 34 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 35 H 0.13 2.14 8.14 -2.39 -0.02 2.12 16 36 H 0.41 11.88 6.16 -92.71 -0.57 11.31 16 37 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.04 1.51 6.86 -2.38 -0.02 1.49 16 40 H 0.06 3.07 6.07 -2.39 -0.01 3.05 16 41 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.01 0.69 8.14 -2.39 -0.02 0.68 16 43 H 0.06 3.13 6.07 -2.39 -0.01 3.12 16 44 H 0.04 1.50 6.86 -2.39 -0.02 1.48 16 45 H 0.26 13.37 8.31 -92.71 -0.77 12.60 16 46 H 0.20 2.65 8.06 -2.91 -0.02 2.63 16 Total: -1.00 -70.90 373.35 3.66 -67.23 By element: Atomic # 1 Polarization: 25.95 SS G_CDS: -0.40 Total: 25.55 kcal Atomic # 6 Polarization: -30.15 SS G_CDS: 5.32 Total: -24.83 kcal Atomic # 7 Polarization: -84.02 SS G_CDS: -3.23 Total: -87.25 kcal Atomic # 8 Polarization: -25.80 SS G_CDS: -0.05 Total: -25.85 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.15 kcal Total: -70.90 3.66 -67.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457992335.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.293 kcal (2) G-P(sol) polarization free energy of solvation -70.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds