Wall clock time and date at job start Tue Mar 31 2020 11:38:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37707 * 119.67827 * 2 1 4 4 C 1.39183 * 119.80805 * 180.02562 * 3 2 1 5 5 N 1.37485 * 133.18717 * 179.97438 * 4 3 2 6 6 H 0.97001 * 125.60458 * 0.02562 * 5 4 3 7 7 C 1.38155 * 108.79375 * 179.97438 * 5 4 3 8 8 C 1.47050 * 125.42841 * 179.73799 * 7 5 4 9 9 O 1.21651 * 120.00423 * 180.02562 * 8 7 5 10 10 N 1.34780 * 120.00058 * 0.02562 * 8 7 5 11 11 C 1.46504 * 120.00026 * 179.97438 * 10 8 7 12 12 C 1.52993 * 109.47090 * 180.02562 * 11 10 8 13 13 C 1.53008 * 109.47445 * 300.00256 * 12 11 10 14 14 C 1.53006 * 109.47195 * 60.00230 * 12 11 10 15 15 C 1.50703 * 109.47440 * 180.02562 * 12 11 10 16 16 H 1.08007 * 119.99322 * 0.02562 * 15 12 11 17 17 C 1.37871 * 120.00074 * 180.02562 * 15 12 11 18 18 N 1.31514 * 120.00317 * 359.97438 * 17 15 12 19 19 Si 1.86801 * 119.99714 * 179.97438 * 17 15 12 20 20 H 1.48501 * 109.47095 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47326 * 120.00170 * 19 17 15 22 22 H 1.48500 * 109.47298 * 240.00045 * 19 17 15 23 23 C 1.35866 * 109.14184 * 0.02562 * 7 5 4 24 24 C 1.40887 * 119.43150 * 359.95047 * 4 3 2 25 25 C 1.40065 * 119.66819 * 0.02562 * 24 4 3 26 26 C 1.50702 * 120.08706 * 179.97438 * 25 24 4 27 27 C 1.36469 * 119.82623 * 0.02562 * 25 24 4 28 28 H 1.08996 * 109.47259 * 270.04300 * 1 2 3 29 29 H 1.08999 * 109.46660 * 30.04172 * 1 2 3 30 30 H 1.08995 * 109.47298 * 150.03391 * 1 2 3 31 31 H 1.08001 * 120.09743 * 0.02562 * 3 2 1 32 32 H 0.97000 * 119.99871 * 0.02562 * 10 8 7 33 33 H 1.08996 * 109.47686 * 300.00784 * 11 10 8 34 34 H 1.09007 * 109.46625 * 60.00424 * 11 10 8 35 35 H 1.08997 * 109.46462 * 59.99719 * 13 12 11 36 36 H 1.08992 * 109.47332 * 180.02562 * 13 12 11 37 37 H 1.08998 * 109.46924 * 300.00303 * 13 12 11 38 38 H 1.08996 * 109.46467 * 60.00039 * 14 12 11 39 39 H 1.09000 * 109.47086 * 179.97438 * 14 12 11 40 40 H 1.08997 * 109.46753 * 300.00305 * 14 12 11 41 41 H 0.97000 * 119.99792 * 179.97438 * 18 17 15 42 42 H 1.08004 * 126.13247 * 179.97438 * 23 7 5 43 43 H 1.08996 * 109.46819 * 90.00196 * 26 25 24 44 44 H 1.08998 * 109.46789 * 210.00370 * 26 25 24 45 45 H 1.08994 * 109.47120 * 330.00606 * 26 25 24 46 46 H 1.07999 * 119.69206 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1889 1.1964 0.0000 4 6 3.5807 1.1996 -0.0005 5 7 4.5193 2.2041 -0.0011 6 1 4.3286 3.1552 -0.0009 7 6 5.7789 1.6364 -0.0009 8 6 7.0484 2.3785 -0.0069 9 8 8.1052 1.7760 -0.0065 10 7 7.0411 3.7263 -0.0127 11 6 8.3059 4.4656 -0.0180 12 6 8.0183 5.9682 -0.0234 13 6 7.2115 6.3287 -1.2725 14 6 7.2165 6.3385 1.2261 15 6 9.3193 6.7288 -0.0295 16 1 10.2575 6.1937 -0.0300 17 6 9.3118 8.1075 -0.0345 18 7 8.1694 8.7589 -0.0344 19 14 10.9245 9.0501 -0.0414 20 1 12.0584 8.0912 -0.0397 21 1 10.9960 9.8999 -1.2571 22 1 11.0013 9.9087 1.1678 23 6 5.6576 0.2832 -0.0008 24 6 4.2758 -0.0259 0.0000 25 6 3.5592 -1.2294 0.0005 26 6 4.2931 -2.5456 0.0005 27 6 2.1947 -1.2069 -0.0001 28 1 -0.3633 0.0008 1.0276 29 1 -0.3632 0.8896 -0.5145 30 1 -0.3633 -0.8902 -0.5133 31 1 1.6452 2.1296 0.0004 32 1 6.1985 4.2067 -0.0125 33 1 8.8806 4.2091 0.8720 34 1 8.8773 4.2015 -0.9080 35 1 6.2705 5.7786 -1.2684 36 1 7.0070 7.3993 -1.2765 37 1 7.7827 6.0649 -2.1625 38 1 7.7913 6.0817 2.1158 39 1 7.0119 7.4091 1.2225 40 1 6.2755 5.7884 1.2301 41 1 8.1642 9.7289 -0.0375 42 1 6.4695 -0.4290 -0.0010 43 1 4.4703 -2.8627 1.0281 44 1 3.6925 -3.2964 -0.5131 45 1 5.2471 -2.4296 -0.5136 46 1 1.6443 -2.1361 -0.0001 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457995046.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:49 Heat of formation + Delta-G solvation = -16.468185 kcal Electronic energy + Delta-G solvation = -25506.625000 eV Core-core repulsion = 21974.021306 eV Total energy + Delta-G solvation = -3532.603694 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.64587 -40.63316 -38.46711 -38.06552 -35.18345 -34.64162 -32.88899 -31.61019 -31.14857 -28.33558 -27.87689 -27.62670 -27.34927 -26.36551 -23.65421 -22.80211 -21.37712 -21.15460 -20.69384 -19.41569 -17.95667 -17.57998 -16.93285 -16.60596 -16.58556 -16.42386 -15.94517 -15.57785 -15.14036 -14.81209 -14.63848 -14.58096 -14.27567 -14.08738 -14.07377 -13.91927 -13.65911 -13.26161 -13.25805 -13.15780 -12.74302 -12.72214 -12.60487 -12.39302 -12.31353 -12.17036 -11.77906 -11.77105 -11.54879 -11.48508 -11.16266 -10.74801 -10.71129 -10.44086 -10.13807 -9.16299 -8.62695 -8.05702 -6.21197 -0.26577 0.65779 1.05224 1.40014 1.44581 1.53662 1.85450 2.11941 2.25250 2.45518 2.86142 3.18508 3.64592 3.71869 3.97434 4.06275 4.29319 4.31605 4.35047 4.44897 4.48034 4.63205 4.67868 4.71225 4.76934 4.87704 4.91934 4.93321 4.97214 4.97631 5.01533 5.05197 5.13125 5.18305 5.22062 5.36649 5.44579 5.52707 5.60450 5.61429 5.64755 5.71447 5.76178 6.09624 6.14141 6.15816 6.36204 6.39296 6.51268 6.82426 7.03776 7.46851 8.93636 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.026449 B = 0.002626 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.406075 B =10660.929970 C =11517.645246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.049 4.049 3 C -0.155 4.155 4 C 0.112 3.888 5 N -0.570 5.570 6 H 0.427 0.573 7 C 0.003 3.997 8 C 0.575 3.425 9 O -0.570 6.570 10 N -0.704 5.704 11 C 0.146 3.854 12 C 0.052 3.948 13 C -0.122 4.122 14 C -0.122 4.122 15 C -0.527 4.527 16 H 0.046 0.954 17 C 0.029 3.971 18 N -0.899 5.899 19 Si 0.946 3.054 20 H -0.275 1.275 21 H -0.281 1.281 22 H -0.282 1.282 23 C -0.111 4.111 24 C -0.147 4.147 25 C -0.034 4.034 26 C -0.115 4.115 27 C -0.155 4.155 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.139 0.861 32 H 0.404 0.596 33 H 0.045 0.955 34 H 0.045 0.955 35 H 0.034 0.966 36 H 0.065 0.935 37 H 0.019 0.981 38 H 0.019 0.981 39 H 0.065 0.935 40 H 0.034 0.966 41 H 0.260 0.740 42 H 0.153 0.847 43 H 0.079 0.921 44 H 0.087 0.913 45 H 0.062 0.938 46 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.771 -17.648 0.122 25.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.051 4.051 3 C -0.175 4.175 4 C 0.001 3.999 5 N -0.176 5.176 6 H 0.266 0.734 7 C -0.107 4.107 8 C 0.363 3.637 9 O -0.450 6.450 10 N -0.354 5.354 11 C 0.023 3.977 12 C 0.051 3.949 13 C -0.180 4.180 14 C -0.180 4.180 15 C -0.566 4.566 16 H 0.065 0.935 17 C -0.171 4.171 18 N -0.538 5.538 19 Si 0.773 3.227 20 H -0.200 1.200 21 H -0.207 1.207 22 H -0.207 1.207 23 C -0.138 4.138 24 C -0.151 4.151 25 C -0.035 4.035 26 C -0.172 4.172 27 C -0.173 4.173 28 H 0.100 0.900 29 H 0.092 0.908 30 H 0.100 0.900 31 H 0.157 0.843 32 H 0.241 0.759 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.053 0.947 36 H 0.083 0.917 37 H 0.039 0.961 38 H 0.039 0.961 39 H 0.083 0.917 40 H 0.053 0.947 41 H 0.070 0.930 42 H 0.170 0.830 43 H 0.098 0.902 44 H 0.106 0.894 45 H 0.081 0.919 46 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -17.015 -17.666 0.116 24.528 hybrid contribution 0.988 1.716 0.011 1.980 sum -16.028 -15.950 0.127 22.612 Atomic orbital electron populations 1.20854 0.88620 1.03937 1.03343 1.20006 0.97412 0.91689 0.95965 1.20164 0.88934 0.99790 1.08647 1.18589 0.91542 0.87371 1.02374 1.41875 1.03305 1.08698 1.63700 0.73351 1.19914 0.83925 0.93508 1.13308 1.17541 0.87466 0.82174 0.76546 1.90789 1.32308 1.69312 1.52584 1.46016 1.10942 1.05299 1.73182 1.21408 0.83920 0.92763 0.99641 1.18364 0.94928 0.88122 0.93456 1.21692 0.96785 1.02611 0.96897 1.21692 0.96794 1.02627 0.96878 1.21281 0.92373 0.91729 1.51212 0.93547 1.25445 0.98776 0.98275 0.94638 1.69903 1.25480 1.07717 1.50704 0.85695 0.80907 0.78628 0.77508 1.19975 1.20740 1.20749 1.20979 0.96165 0.93002 1.03670 1.18236 0.92496 0.93612 1.10737 1.19497 0.93982 0.93688 0.96312 1.20839 1.00266 0.92937 1.03147 1.20735 0.92825 0.98653 1.05135 0.90010 0.90790 0.89977 0.84320 0.75902 0.93643 0.93641 0.94741 0.91660 0.96135 0.96131 0.91655 0.94733 0.92995 0.82959 0.90210 0.89442 0.91879 0.83423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.05 9.99 71.24 0.71 -0.34 16 2 C -0.05 -0.79 5.88 -19.83 -0.12 -0.91 16 3 C -0.15 -2.95 9.71 22.37 0.22 -2.74 16 4 C 0.11 2.69 7.25 39.13 0.28 2.97 16 5 N -0.57 -13.96 6.07 -177.19 -1.08 -15.04 16 6 H 0.43 8.45 8.12 -92.71 -0.75 7.69 16 7 C 0.00 0.09 6.97 39.91 0.28 0.37 16 8 C 0.58 20.79 7.80 86.55 0.68 21.47 16 9 O -0.57 -24.61 16.84 -4.19 -0.07 -24.68 16 10 N -0.70 -24.67 4.95 -466.72 -2.31 -26.99 16 11 C 0.15 6.17 4.50 86.38 0.39 6.56 16 12 C 0.05 2.36 0.50 -52.92 -0.03 2.34 16 13 C -0.12 -5.33 8.08 71.98 0.58 -4.75 16 14 C -0.12 -5.33 8.08 71.98 0.58 -4.75 16 15 C -0.53 -27.57 8.01 25.60 0.21 -27.36 16 16 H 0.05 2.48 7.74 -2.91 -0.02 2.46 16 17 C 0.03 1.48 5.15 84.65 0.44 1.92 16 18 N -0.90 -47.33 9.35 21.45 0.20 -47.13 16 19 Si 0.95 42.30 29.54 68.60 2.03 44.33 16 20 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 21 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 22 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 23 C -0.11 -3.18 10.12 22.55 0.23 -2.95 16 24 C -0.15 -3.72 5.98 -21.36 -0.13 -3.85 16 25 C -0.03 -0.69 5.88 -19.83 -0.12 -0.80 16 26 C -0.12 -1.75 9.93 71.24 0.71 -1.04 16 27 C -0.15 -2.54 9.25 22.02 0.20 -2.34 16 28 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.07 0.62 8.08 -2.39 -0.02 0.60 16 30 H 0.08 0.57 8.08 -2.39 -0.02 0.55 16 31 H 0.14 2.07 8.06 -2.91 -0.02 2.04 16 32 H 0.40 12.18 5.22 -92.71 -0.48 11.70 16 33 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.05 2.03 8.14 -2.38 -0.02 2.02 16 35 H 0.03 1.24 6.86 -2.39 -0.02 1.23 16 36 H 0.06 3.17 6.07 -2.39 -0.01 3.16 16 37 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.06 3.17 6.07 -2.39 -0.01 3.16 16 40 H 0.03 1.25 6.86 -2.39 -0.02 1.23 16 41 H 0.26 13.19 8.31 -92.71 -0.77 12.42 16 42 H 0.15 4.21 8.06 -2.91 -0.02 4.18 16 43 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.09 0.94 8.08 -2.39 -0.02 0.92 16 45 H 0.06 1.03 7.84 -2.39 -0.02 1.02 16 46 H 0.15 1.60 8.06 -2.91 -0.02 1.57 16 Total: -1.00 -62.98 371.51 3.64 -59.34 By element: Atomic # 1 Polarization: 26.61 SS G_CDS: -0.23 Total: 26.38 kcal Atomic # 6 Polarization: -21.32 SS G_CDS: 5.11 Total: -16.21 kcal Atomic # 7 Polarization: -85.97 SS G_CDS: -3.19 Total: -89.16 kcal Atomic # 8 Polarization: -24.61 SS G_CDS: -0.07 Total: -24.68 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.33 kcal Total: -62.98 3.64 -59.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457995046.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.873 kcal (2) G-P(sol) polarization free energy of solvation -62.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds