Wall clock time and date at job start Tue Mar 31 2020 11:56:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46493 * 109.47414 * 24.88166 * 3 2 1 5 5 C 1.36936 * 120.00365 * 263.91570 * 4 3 2 6 6 H 1.08004 * 120.00442 * 199.39114 * 5 4 3 7 7 C 1.38817 * 119.99568 * 19.37924 * 5 4 3 8 8 N 1.31620 * 119.99728 * 22.30442 * 7 5 4 9 9 Si 1.86804 * 119.99900 * 202.29447 * 7 5 4 10 10 H 1.48496 * 109.47118 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46857 * 120.00594 * 9 7 5 12 12 H 1.48504 * 109.47053 * 240.00467 * 9 7 5 13 13 C 1.46505 * 120.00103 * 83.91164 * 4 3 2 14 14 C 1.50701 * 109.46898 * 90.00207 * 13 4 3 15 15 O 1.21280 * 119.99994 * 359.97438 * 14 13 4 16 16 N 1.34775 * 120.00029 * 179.97438 * 14 13 4 17 17 C 1.46500 * 120.00239 * 179.97438 * 16 14 13 18 18 H 1.09004 * 109.47006 * 325.00366 * 17 16 14 19 19 C 1.52992 * 109.47128 * 85.00373 * 17 16 14 20 20 C 1.53005 * 109.47120 * 205.00336 * 17 16 14 21 21 C 1.50700 * 109.47272 * 65.00324 * 20 17 16 22 22 C 1.38257 * 119.99770 * 265.00169 * 21 20 17 23 23 C 1.38211 * 119.99867 * 179.97438 * 22 21 20 24 24 C 1.38251 * 119.99962 * 0.02562 * 23 22 21 25 25 C 1.38206 * 120.00209 * 359.97401 * 24 23 22 26 26 C 1.38211 * 120.00407 * 84.72384 * 21 20 17 27 27 C 1.50700 * 119.99921 * 359.97438 * 26 21 20 28 28 H 4.40635 * 5.51468 * 180.02562 * 4 1 2 29 29 H 1.08998 * 109.46983 * 264.87644 * 3 2 1 30 30 H 1.09006 * 109.46835 * 144.88257 * 3 2 1 31 31 H 0.97003 * 119.99681 * 179.97438 * 8 7 5 32 32 H 1.08997 * 109.47027 * 330.00394 * 13 4 3 33 33 H 1.09005 * 109.47485 * 209.99776 * 13 4 3 34 34 H 0.97002 * 119.99862 * 0.02562 * 16 14 13 35 35 H 1.08998 * 109.47426 * 59.99725 * 19 17 16 36 36 H 1.08997 * 109.47218 * 180.02562 * 19 17 16 37 37 H 1.09010 * 109.47190 * 300.00156 * 19 17 16 38 38 H 1.09003 * 109.46709 * 184.99967 * 20 17 16 39 39 H 1.09000 * 109.47075 * 304.99743 * 20 17 16 40 40 H 1.08005 * 119.99981 * 359.97438 * 22 21 20 41 41 H 1.08003 * 119.99638 * 179.97438 * 23 22 21 42 42 H 1.08004 * 119.99691 * 179.97438 * 24 23 22 43 43 H 1.08004 * 119.99613 * 179.97438 * 25 24 23 44 44 H 1.08998 * 109.47044 * 89.99451 * 27 26 21 45 45 H 1.09002 * 109.47189 * 210.00486 * 27 26 21 46 46 H 1.09007 * 109.47020 * 329.99640 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.2520 -0.5811 5 6 3.4822 -2.2957 0.2346 6 1 4.1210 -3.0828 -0.1378 7 6 3.0132 -2.3417 1.5404 8 7 1.9282 -1.6754 1.8738 9 14 3.9219 -3.3496 2.8241 10 1 5.1023 -3.9986 2.1993 11 1 4.3714 -2.4598 3.9247 12 1 3.0144 -4.3912 3.3690 13 6 3.2523 -1.3884 -2.0351 14 6 4.6244 -0.9439 -2.4721 15 8 5.4251 -0.5514 -1.6500 16 7 4.9617 -0.9826 -3.7764 17 6 6.2952 -0.5500 -4.2013 18 1 6.6251 0.2789 -3.5750 19 6 7.2772 -1.7151 -4.0639 20 6 6.2431 -0.0964 -5.6617 21 6 5.3715 1.1276 -5.7767 22 6 4.0371 0.9967 -6.1141 23 6 3.2376 2.1192 -6.2192 24 6 3.7723 3.3729 -5.9873 25 6 5.1062 3.5037 -5.6500 26 6 5.9046 2.3804 -5.5393 27 6 7.3574 2.5225 -5.1649 28 1 -1.0498 -0.0003 -0.0004 29 1 3.0092 0.0926 1.0235 30 1 3.0089 0.8415 -0.5912 31 1 1.6003 -1.7078 2.7861 32 1 2.4981 -0.7689 -2.5201 33 1 3.1017 -2.4309 -2.3156 34 1 4.3211 -1.2962 -4.4338 35 1 6.9474 -2.5440 -4.6902 36 1 8.2695 -1.3931 -4.3797 37 1 7.3144 -2.0383 -3.0235 38 1 7.2501 0.1412 -6.0045 39 1 5.8294 -0.8962 -6.2759 40 1 3.6195 0.0174 -6.2957 41 1 2.1953 2.0170 -6.4832 42 1 3.1476 4.2501 -6.0698 43 1 5.5239 4.4831 -5.4693 44 1 7.9557 2.6394 -6.0684 45 1 7.4846 3.3985 -4.5288 46 1 7.6825 1.6323 -4.6264 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491623885.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:56:19 Heat of formation + Delta-G solvation = 62.046501 kcal Electronic energy + Delta-G solvation = -26221.518367 eV Core-core repulsion = 22692.319326 eV Total energy + Delta-G solvation = -3529.199041 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -39.96490 -38.81481 -36.19164 -35.22006 -33.04871 -31.93779 -31.51401 -31.26217 -30.31680 -27.41866 -27.03963 -26.17023 -25.82597 -22.65168 -22.07063 -21.29563 -20.37718 -19.76865 -17.43454 -16.73569 -16.41898 -16.30857 -15.89847 -15.28991 -15.12633 -14.79662 -14.37508 -13.95110 -13.71266 -13.59969 -13.35855 -13.20421 -13.07754 -12.91785 -12.50239 -12.43130 -12.22359 -12.13316 -12.07584 -11.80230 -11.43499 -11.21542 -11.05028 -10.94920 -10.82988 -10.78567 -10.64635 -10.19125 -9.96307 -9.24115 -8.91250 -8.83201 -8.67404 -8.66159 -8.50923 -8.37316 -6.94792 -5.74312 -3.15409 1.30877 1.35284 3.41532 3.49261 3.50650 3.53923 3.65194 3.70104 4.22302 4.42103 4.59681 4.62032 4.71576 4.87043 4.90164 5.00097 5.14941 5.23254 5.37698 5.38406 5.45805 5.48585 5.53988 5.62826 5.63689 5.67311 5.71195 5.77292 5.81811 5.90337 6.02724 6.06623 6.16870 6.23143 6.32437 6.35149 6.43899 6.47374 6.59300 6.77720 6.97766 6.98883 7.27967 7.44905 7.80441 8.06296 8.32073 9.03520 9.13730 9.22395 9.79475 10.24737 11.29496 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.015064 B = 0.003830 C = 0.003320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.307765 B = 7309.801856 C = 8432.767285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.299 4.299 2 C -0.095 4.095 3 C 0.272 3.728 4 N -0.561 5.561 5 C -0.257 4.257 6 H 0.071 0.929 7 C 0.006 3.994 8 N -0.886 5.886 9 Si 0.899 3.101 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.292 1.292 13 C 0.133 3.867 14 C 0.482 3.518 15 O -0.522 6.522 16 N -0.738 5.738 17 C 0.147 3.853 18 H 0.085 0.915 19 C -0.163 4.163 20 C -0.089 4.089 21 C -0.076 4.076 22 C -0.109 4.109 23 C -0.123 4.123 24 C -0.122 4.122 25 C -0.120 4.120 26 C -0.082 4.082 27 C -0.120 4.120 28 H 0.191 0.809 29 H 0.093 0.907 30 H 0.036 0.964 31 H 0.253 0.747 32 H 0.067 0.933 33 H 0.078 0.922 34 H 0.391 0.609 35 H 0.054 0.946 36 H 0.058 0.942 37 H 0.065 0.935 38 H 0.084 0.916 39 H 0.075 0.925 40 H 0.119 0.881 41 H 0.120 0.880 42 H 0.118 0.882 43 H 0.118 0.882 44 H 0.068 0.932 45 H 0.065 0.935 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.414 6.897 -19.433 21.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.319 4.319 2 C -0.098 4.098 3 C 0.147 3.853 4 N -0.278 5.278 5 C -0.386 4.386 6 H 0.089 0.911 7 C -0.193 4.193 8 N -0.529 5.529 9 Si 0.729 3.271 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.219 1.219 13 C 0.001 3.999 14 C 0.266 3.734 15 O -0.396 6.396 16 N -0.393 5.393 17 C 0.042 3.958 18 H 0.103 0.897 19 C -0.221 4.221 20 C -0.127 4.127 21 C -0.076 4.076 22 C -0.127 4.127 23 C -0.141 4.141 24 C -0.140 4.140 25 C -0.138 4.138 26 C -0.082 4.082 27 C -0.176 4.176 28 H 0.208 0.792 29 H 0.111 0.889 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.085 0.915 33 H 0.096 0.904 34 H 0.224 0.776 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.084 0.916 38 H 0.103 0.897 39 H 0.094 0.906 40 H 0.137 0.863 41 H 0.138 0.862 42 H 0.136 0.864 43 H 0.136 0.864 44 H 0.087 0.913 45 H 0.084 0.916 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 6.951 7.174 -18.580 21.095 hybrid contribution -0.260 -0.718 0.489 0.907 sum 6.691 6.456 -18.091 20.340 Atomic orbital electron populations 1.24150 0.95270 1.05612 1.06820 1.24259 0.95226 0.95377 0.94906 1.17647 0.82597 0.85938 0.99145 1.43534 1.73623 1.12039 0.98619 1.19117 1.24097 1.02148 0.93231 0.91104 1.24870 0.96154 0.99588 0.98695 1.70149 1.19362 1.45301 1.18105 0.86282 0.79563 0.79290 0.81981 1.20304 1.21505 1.21941 1.20657 0.91135 1.00664 0.87474 1.23083 0.92317 0.77034 0.80958 1.90626 1.52241 1.44941 1.51781 1.46356 1.14857 1.69123 1.08971 1.20785 0.84293 0.97106 0.93652 0.89675 1.22189 0.98469 0.98425 1.03039 1.20955 0.99892 0.95106 0.96738 1.19648 0.94431 0.94043 0.99524 1.20986 0.93169 0.98547 1.00010 1.21105 0.99685 0.92699 1.00578 1.21095 0.95292 0.97494 1.00130 1.20996 0.94030 0.98020 1.00733 1.19751 0.96332 0.92716 0.99428 1.20880 0.92205 1.03153 1.01378 0.79227 0.88877 0.94573 0.93613 0.91510 0.90375 0.77608 0.92681 0.92309 0.91623 0.89733 0.90611 0.86258 0.86220 0.86364 0.86367 0.91340 0.91567 0.90996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -6.90 19.25 29.55 0.57 -6.33 16 2 C -0.09 -2.36 11.50 -37.12 -0.43 -2.79 16 3 C 0.27 6.84 5.41 -6.83 -0.04 6.80 16 4 N -0.56 -14.17 1.98 -177.95 -0.35 -14.52 16 5 C -0.26 -7.15 9.63 -15.06 -0.14 -7.30 16 6 H 0.07 1.97 7.92 -52.48 -0.42 1.55 16 7 C 0.01 0.17 4.82 -17.43 -0.08 0.08 16 8 N -0.89 -25.72 9.61 55.49 0.53 -25.19 16 9 Si 0.90 22.34 29.61 -169.99 -5.03 17.30 16 10 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 11 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 12 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 13 C 0.13 2.68 6.16 -5.19 -0.03 2.65 16 14 C 0.48 9.20 7.86 -10.99 -0.09 9.11 16 15 O -0.52 -12.31 16.09 5.56 0.09 -12.22 16 16 N -0.74 -10.27 4.67 -53.81 -0.25 -10.52 16 17 C 0.15 1.82 2.31 -67.93 -0.16 1.67 16 18 H 0.09 1.28 6.43 -51.93 -0.33 0.95 16 19 C -0.16 -1.91 9.48 37.15 0.35 -1.56 16 20 C -0.09 -0.84 4.19 -27.88 -0.12 -0.95 16 21 C -0.08 -0.83 4.89 -104.63 -0.51 -1.34 16 22 C -0.11 -1.15 9.35 -39.58 -0.37 -1.52 16 23 C -0.12 -1.30 10.05 -39.59 -0.40 -1.69 16 24 C -0.12 -1.29 10.05 -39.59 -0.40 -1.69 16 25 C -0.12 -1.30 9.70 -39.59 -0.38 -1.68 16 26 C -0.08 -0.91 5.88 -104.63 -0.62 -1.53 16 27 C -0.12 -1.10 9.22 36.01 0.33 -0.77 16 28 H 0.19 3.64 7.80 -54.10 -0.42 3.22 16 29 H 0.09 2.58 6.59 -51.93 -0.34 2.24 16 30 H 0.04 0.84 8.12 -51.93 -0.42 0.42 16 31 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 32 H 0.07 1.23 8.07 -51.93 -0.42 0.81 16 33 H 0.08 1.49 8.04 -51.93 -0.42 1.07 16 34 H 0.39 4.37 8.35 -40.82 -0.34 4.03 16 35 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.98 8.14 -51.92 -0.42 0.56 16 38 H 0.08 0.68 7.01 -51.93 -0.36 0.32 16 39 H 0.08 0.60 8.05 -51.93 -0.42 0.19 16 40 H 0.12 1.03 8.00 -52.48 -0.42 0.61 16 41 H 0.12 1.05 8.06 -52.48 -0.42 0.63 16 42 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 43 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 44 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 45 H 0.07 0.59 8.09 -51.93 -0.42 0.17 16 46 H 0.07 0.68 5.47 -51.93 -0.28 0.40 16 LS Contribution 386.01 15.07 5.82 5.82 Total: -1.00 -33.82 386.01 -8.82 -42.64 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: -7.11 Total: 5.54 kcal Atomic # 6 Polarization: -6.34 SS G_CDS: -2.51 Total: -8.85 kcal Atomic # 7 Polarization: -50.17 SS G_CDS: -0.07 Total: -50.24 kcal Atomic # 8 Polarization: -12.31 SS G_CDS: 0.09 Total: -12.22 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.03 Total: 17.30 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.82 -8.82 -42.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491623885.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.686 kcal (2) G-P(sol) polarization free energy of solvation -33.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds