Wall clock time and date at job start Tue Mar 31 2020 11:56:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46493 * 109.47414 * 24.88166 * 3 2 1 5 5 C 1.36936 * 120.00365 * 263.91570 * 4 3 2 6 6 H 1.08004 * 120.00442 * 199.39114 * 5 4 3 7 7 C 1.38817 * 119.99568 * 19.37924 * 5 4 3 8 8 N 1.31620 * 119.99728 * 22.30442 * 7 5 4 9 9 Si 1.86804 * 119.99900 * 202.29447 * 7 5 4 10 10 H 1.48496 * 109.47118 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46857 * 120.00594 * 9 7 5 12 12 H 1.48504 * 109.47053 * 240.00467 * 9 7 5 13 13 C 1.46505 * 120.00103 * 83.91164 * 4 3 2 14 14 C 1.50701 * 109.46898 * 90.00207 * 13 4 3 15 15 O 1.21280 * 119.99994 * 359.97438 * 14 13 4 16 16 N 1.34775 * 120.00029 * 179.97438 * 14 13 4 17 17 C 1.46500 * 120.00239 * 179.97438 * 16 14 13 18 18 H 1.09004 * 109.47006 * 325.00366 * 17 16 14 19 19 C 1.52992 * 109.47128 * 85.00373 * 17 16 14 20 20 C 1.53005 * 109.47120 * 205.00336 * 17 16 14 21 21 C 1.50700 * 109.47272 * 65.00324 * 20 17 16 22 22 C 1.38257 * 119.99770 * 265.00169 * 21 20 17 23 23 C 1.38211 * 119.99867 * 179.97438 * 22 21 20 24 24 C 1.38251 * 119.99962 * 0.02562 * 23 22 21 25 25 C 1.38206 * 120.00209 * 359.97401 * 24 23 22 26 26 C 1.38211 * 120.00407 * 84.72384 * 21 20 17 27 27 C 1.50700 * 119.99921 * 359.97438 * 26 21 20 28 28 H 4.40635 * 5.51468 * 180.02562 * 4 1 2 29 29 H 1.08998 * 109.46983 * 264.87644 * 3 2 1 30 30 H 1.09006 * 109.46835 * 144.88257 * 3 2 1 31 31 H 0.97003 * 119.99681 * 179.97438 * 8 7 5 32 32 H 1.08997 * 109.47027 * 330.00394 * 13 4 3 33 33 H 1.09005 * 109.47485 * 209.99776 * 13 4 3 34 34 H 0.97002 * 119.99862 * 0.02562 * 16 14 13 35 35 H 1.08998 * 109.47426 * 59.99725 * 19 17 16 36 36 H 1.08997 * 109.47218 * 180.02562 * 19 17 16 37 37 H 1.09010 * 109.47190 * 300.00156 * 19 17 16 38 38 H 1.09003 * 109.46709 * 184.99967 * 20 17 16 39 39 H 1.09000 * 109.47075 * 304.99743 * 20 17 16 40 40 H 1.08005 * 119.99981 * 359.97438 * 22 21 20 41 41 H 1.08003 * 119.99638 * 179.97438 * 23 22 21 42 42 H 1.08004 * 119.99691 * 179.97438 * 24 23 22 43 43 H 1.08004 * 119.99613 * 179.97438 * 25 24 23 44 44 H 1.08998 * 109.47044 * 89.99451 * 27 26 21 45 45 H 1.09002 * 109.47189 * 210.00486 * 27 26 21 46 46 H 1.09007 * 109.47020 * 329.99640 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.2520 -0.5811 5 6 3.4822 -2.2957 0.2346 6 1 4.1210 -3.0828 -0.1378 7 6 3.0132 -2.3417 1.5404 8 7 1.9282 -1.6754 1.8738 9 14 3.9219 -3.3496 2.8241 10 1 5.1023 -3.9986 2.1993 11 1 4.3714 -2.4598 3.9247 12 1 3.0144 -4.3912 3.3690 13 6 3.2523 -1.3884 -2.0351 14 6 4.6244 -0.9439 -2.4721 15 8 5.4251 -0.5514 -1.6500 16 7 4.9617 -0.9826 -3.7764 17 6 6.2952 -0.5500 -4.2013 18 1 6.6251 0.2789 -3.5750 19 6 7.2772 -1.7151 -4.0639 20 6 6.2431 -0.0964 -5.6617 21 6 5.3715 1.1276 -5.7767 22 6 4.0371 0.9967 -6.1141 23 6 3.2376 2.1192 -6.2192 24 6 3.7723 3.3729 -5.9873 25 6 5.1062 3.5037 -5.6500 26 6 5.9046 2.3804 -5.5393 27 6 7.3574 2.5225 -5.1649 28 1 -1.0498 -0.0003 -0.0004 29 1 3.0092 0.0926 1.0235 30 1 3.0089 0.8415 -0.5912 31 1 1.6003 -1.7078 2.7861 32 1 2.4981 -0.7689 -2.5201 33 1 3.1017 -2.4309 -2.3156 34 1 4.3211 -1.2962 -4.4338 35 1 6.9474 -2.5440 -4.6902 36 1 8.2695 -1.3931 -4.3797 37 1 7.3144 -2.0383 -3.0235 38 1 7.2501 0.1412 -6.0045 39 1 5.8294 -0.8962 -6.2759 40 1 3.6195 0.0174 -6.2957 41 1 2.1953 2.0170 -6.4832 42 1 3.1476 4.2501 -6.0698 43 1 5.5239 4.4831 -5.4693 44 1 7.9557 2.6394 -6.0684 45 1 7.4846 3.3985 -4.5288 46 1 7.6825 1.6323 -4.6264 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491623885.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:56:18 Heat of formation + Delta-G solvation = 43.513150 kcal Electronic energy + Delta-G solvation = -26222.322034 eV Core-core repulsion = 22692.319326 eV Total energy + Delta-G solvation = -3530.002708 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.96964 -40.07848 -37.76274 -36.69854 -33.96417 -33.52028 -33.19411 -32.73298 -31.47844 -28.74013 -28.18892 -27.83922 -26.97009 -24.26871 -23.00979 -22.41951 -21.30982 -21.18509 -19.37231 -18.38810 -17.74647 -17.43130 -17.09922 -16.82980 -16.18685 -16.00809 -15.84367 -15.38682 -15.19579 -14.96787 -14.65173 -14.53527 -14.16384 -13.93523 -13.85227 -13.48220 -13.25056 -13.21892 -13.15956 -12.94464 -12.84414 -12.79850 -12.67099 -12.47920 -12.24615 -11.98943 -11.90070 -11.72605 -11.59987 -11.01705 -10.80573 -10.55316 -10.32840 -9.88917 -9.62310 -9.37340 -8.93103 -7.85502 -5.27155 0.51019 0.55980 1.42899 1.47533 1.56874 1.96763 2.20852 2.48656 2.53343 2.61308 2.89569 3.28953 3.78386 3.81475 3.95921 4.00234 4.07052 4.14224 4.21312 4.33398 4.35923 4.44444 4.52367 4.58229 4.60717 4.67851 4.78418 4.81206 4.85633 4.88525 4.91085 4.94998 5.00387 5.14017 5.23285 5.26087 5.35786 5.40815 5.61589 5.64381 5.64884 5.68915 5.73873 5.85564 6.21596 6.24212 6.80719 7.06790 7.34848 7.58680 7.79679 8.20409 9.16238 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.015064 B = 0.003830 C = 0.003320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.307765 B = 7309.801856 C = 8432.767285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.277 4.277 2 C -0.138 4.138 3 C 0.281 3.719 4 N -0.578 5.578 5 C -0.262 4.262 6 H 0.064 0.936 7 C -0.041 4.041 8 N -0.908 5.908 9 Si 0.956 3.044 10 H -0.275 1.275 11 H -0.293 1.293 12 H -0.289 1.289 13 C 0.130 3.870 14 C 0.487 3.513 15 O -0.574 6.574 16 N -0.715 5.715 17 C 0.148 3.852 18 H 0.057 0.943 19 C -0.157 4.157 20 C -0.077 4.077 21 C -0.091 4.091 22 C -0.118 4.118 23 C -0.137 4.137 24 C -0.134 4.134 25 C -0.137 4.137 26 C -0.099 4.099 27 C -0.118 4.118 28 H 0.227 0.773 29 H 0.058 0.942 30 H 0.045 0.955 31 H 0.248 0.752 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.408 0.592 35 H 0.073 0.927 36 H 0.082 0.918 37 H 0.027 0.973 38 H 0.103 0.897 39 H 0.099 0.901 40 H 0.139 0.861 41 H 0.135 0.865 42 H 0.132 0.868 43 H 0.129 0.871 44 H 0.086 0.914 45 H 0.064 0.936 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.267 6.358 -21.626 23.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.296 4.296 2 C -0.141 4.141 3 C 0.155 3.845 4 N -0.296 5.296 5 C -0.392 4.392 6 H 0.082 0.918 7 C -0.237 4.237 8 N -0.552 5.552 9 Si 0.784 3.216 10 H -0.200 1.200 11 H -0.220 1.220 12 H -0.216 1.216 13 C 0.000 4.000 14 C 0.272 3.728 15 O -0.452 6.452 16 N -0.370 5.370 17 C 0.043 3.957 18 H 0.075 0.925 19 C -0.216 4.216 20 C -0.115 4.115 21 C -0.091 4.091 22 C -0.136 4.136 23 C -0.154 4.154 24 C -0.152 4.152 25 C -0.155 4.155 26 C -0.099 4.099 27 C -0.175 4.175 28 H 0.244 0.756 29 H 0.076 0.924 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.104 0.896 33 H 0.108 0.892 34 H 0.245 0.755 35 H 0.092 0.908 36 H 0.101 0.899 37 H 0.046 0.954 38 H 0.121 0.879 39 H 0.117 0.883 40 H 0.156 0.844 41 H 0.153 0.847 42 H 0.150 0.850 43 H 0.147 0.853 44 H 0.105 0.895 45 H 0.083 0.917 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 6.808 6.624 -20.864 22.924 hybrid contribution -0.225 -0.489 1.048 1.178 sum 6.583 6.135 -19.816 21.763 Atomic orbital electron populations 1.24994 0.96190 1.03721 1.04692 1.24382 0.95729 0.97170 0.96818 1.17365 0.83315 0.86444 0.97366 1.43625 1.74121 1.11363 1.00494 1.19277 1.23432 1.02411 0.94089 0.91787 1.25485 0.96915 1.01184 1.00139 1.70277 1.20370 1.46767 1.17774 0.85403 0.78519 0.77960 0.79669 1.20030 1.22043 1.21578 1.20850 0.92271 1.01885 0.85016 1.22617 0.91352 0.76635 0.82199 1.90615 1.53389 1.47590 1.53579 1.46066 1.16063 1.67353 1.07506 1.20872 0.83054 0.96521 0.95244 0.92521 1.22134 0.99751 0.98659 1.01027 1.20897 1.01025 0.95158 0.94376 1.19869 0.94924 0.94443 0.99881 1.21296 0.93158 0.99499 0.99645 1.21405 1.00630 0.92803 1.00608 1.21388 0.95535 0.98333 0.99924 1.21262 0.94441 0.98705 1.01082 1.20077 0.97247 0.93127 0.99450 1.20893 0.91621 1.02850 1.02109 0.75614 0.92425 0.93663 0.94271 0.89563 0.89174 0.75550 0.90762 0.89917 0.95405 0.87911 0.88303 0.84357 0.84738 0.84967 0.85340 0.89507 0.91737 0.91464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.28 -12.33 19.25 74.32 1.43 -10.90 16 2 C -0.14 -6.87 11.50 31.12 0.36 -6.51 16 3 C 0.28 14.44 5.41 84.57 0.46 14.90 16 4 N -0.58 -29.53 1.98 -716.90 -1.42 -30.95 16 5 C -0.26 -14.80 9.63 84.03 0.81 -13.99 16 6 H 0.06 3.61 7.92 -2.91 -0.02 3.59 16 7 C -0.04 -2.31 4.82 84.86 0.41 -1.91 16 8 N -0.91 -53.44 9.61 21.65 0.21 -53.23 16 9 Si 0.96 46.72 29.61 68.60 2.03 48.75 16 10 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 11 H -0.29 -14.46 7.11 99.48 0.71 -13.76 16 12 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 13 C 0.13 5.17 6.16 85.63 0.53 5.70 16 14 C 0.49 18.49 7.86 87.66 0.69 19.18 16 15 O -0.57 -27.69 16.09 -3.03 -0.05 -27.73 16 16 N -0.72 -18.81 4.67 -442.53 -2.07 -20.88 16 17 C 0.15 3.44 2.31 44.99 0.10 3.55 16 18 H 0.06 1.70 6.43 -2.39 -0.02 1.68 16 19 C -0.16 -3.44 9.48 71.98 0.68 -2.75 16 20 C -0.08 -1.23 4.19 29.85 0.13 -1.10 16 21 C -0.09 -1.80 4.89 -19.87 -0.10 -1.90 16 22 C -0.12 -2.23 9.35 22.27 0.21 -2.02 16 23 C -0.14 -2.66 10.05 22.27 0.22 -2.44 16 24 C -0.13 -2.69 10.05 22.27 0.22 -2.47 16 25 C -0.14 -2.86 9.70 22.27 0.22 -2.65 16 26 C -0.10 -2.08 5.88 -19.87 -0.12 -2.20 16 27 C -0.12 -2.05 9.22 71.24 0.66 -1.40 16 28 H 0.23 7.95 7.80 -4.43 -0.03 7.91 16 29 H 0.06 3.34 6.59 -2.39 -0.02 3.32 16 30 H 0.05 2.17 8.12 -2.38 -0.02 2.15 16 31 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 32 H 0.09 3.06 8.07 -2.39 -0.02 3.04 16 33 H 0.09 3.33 8.04 -2.38 -0.02 3.31 16 34 H 0.41 7.99 8.35 -92.71 -0.77 7.22 16 35 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.03 0.81 8.14 -2.38 -0.02 0.80 16 38 H 0.10 1.32 7.01 -2.39 -0.02 1.30 16 39 H 0.10 1.16 8.05 -2.39 -0.02 1.14 16 40 H 0.14 1.95 8.00 -2.91 -0.02 1.93 16 41 H 0.13 2.10 8.06 -2.91 -0.02 2.08 16 42 H 0.13 2.14 8.06 -2.91 -0.02 2.12 16 43 H 0.13 2.26 8.06 -2.91 -0.02 2.23 16 44 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 45 H 0.06 1.11 8.09 -2.39 -0.02 1.09 16 46 H 0.07 1.22 5.47 -2.38 -0.01 1.20 16 Total: -1.00 -74.66 386.01 5.80 -68.86 By element: Atomic # 1 Polarization: 23.91 SS G_CDS: 0.19 Total: 24.10 kcal Atomic # 6 Polarization: -15.81 SS G_CDS: 6.91 Total: -8.91 kcal Atomic # 7 Polarization: -101.79 SS G_CDS: -3.28 Total: -105.06 kcal Atomic # 8 Polarization: -27.69 SS G_CDS: -0.05 Total: -27.73 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 2.03 Total: 48.75 kcal Total: -74.66 5.80 -68.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491623885.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.369 kcal (2) G-P(sol) polarization free energy of solvation -74.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.856 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds