Wall clock time and date at job start Tue Mar 31 2020 11:56:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47344 * 225.54337 * 3 2 1 5 5 C 1.36931 * 120.00432 * 264.66902 * 4 3 2 6 6 H 1.08001 * 120.00304 * 199.43388 * 5 4 3 7 7 C 1.38817 * 119.99811 * 19.42928 * 5 4 3 8 8 N 1.31616 * 120.00051 * 20.92194 * 7 5 4 9 9 Si 1.86806 * 119.99864 * 200.91960 * 7 5 4 10 10 H 1.48502 * 109.46854 * 60.00212 * 9 7 5 11 11 H 1.48497 * 109.46710 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.46945 * 299.99900 * 9 7 5 13 13 C 1.46500 * 119.99328 * 84.66201 * 4 3 2 14 14 C 1.50697 * 109.46793 * 90.00711 * 13 4 3 15 15 O 1.21282 * 120.00711 * 359.97438 * 14 13 4 16 16 N 1.34781 * 120.00286 * 179.97438 * 14 13 4 17 17 C 1.46495 * 120.00405 * 179.97438 * 16 14 13 18 18 H 1.08998 * 109.47224 * 32.61128 * 17 16 14 19 19 C 1.53007 * 109.47127 * 272.60704 * 17 16 14 20 20 C 1.53002 * 109.47078 * 152.61374 * 17 16 14 21 21 C 1.50695 * 109.46806 * 294.79119 * 20 17 16 22 22 C 1.38263 * 120.00149 * 99.11985 * 21 20 17 23 23 C 1.38211 * 120.00401 * 180.25198 * 22 21 20 24 24 C 1.38259 * 119.99887 * 359.79270 * 23 22 21 25 25 C 1.38213 * 119.99878 * 359.95474 * 24 23 22 26 26 C 1.38218 * 120.00758 * 278.88913 * 21 20 17 27 27 C 1.50705 * 119.99080 * 359.97438 * 26 21 20 28 28 H 4.40648 * 5.51460 * 179.97438 * 4 1 2 29 29 H 1.09007 * 109.46902 * 105.54334 * 3 2 1 30 30 H 1.09000 * 109.47183 * 345.55164 * 3 2 1 31 31 H 0.97003 * 119.99722 * 180.02562 * 8 7 5 32 32 H 1.08991 * 109.47680 * 330.00278 * 13 4 3 33 33 H 1.09006 * 109.47134 * 209.99969 * 13 4 3 34 34 H 0.97004 * 119.99782 * 359.97438 * 16 14 13 35 35 H 1.09005 * 109.46290 * 59.99969 * 19 17 16 36 36 H 1.08993 * 109.46874 * 179.97438 * 19 17 16 37 37 H 1.08998 * 109.47414 * 300.00307 * 19 17 16 38 38 H 1.09005 * 109.46779 * 174.79797 * 20 17 16 39 39 H 1.08989 * 109.47457 * 54.79495 * 20 17 16 40 40 H 1.08003 * 119.99674 * 0.02562 * 22 21 20 41 41 H 1.08000 * 120.00040 * 179.76751 * 23 22 21 42 42 H 1.07997 * 120.00094 * 179.97438 * 24 23 22 43 43 H 1.08001 * 119.99993 * 180.02562 * 25 24 23 44 44 H 1.09006 * 109.46919 * 272.71656 * 27 26 21 45 45 H 1.09003 * 109.46779 * 152.72189 * 27 26 21 46 46 H 1.08990 * 109.47705 * 32.72187 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1340 0.9682 0.9859 5 6 3.4656 2.2375 0.5936 6 1 4.1044 2.8459 1.2167 7 6 2.9807 2.7424 -0.6052 8 7 1.9112 2.2111 -1.1584 9 14 3.8461 4.1761 -1.4330 10 1 5.2472 3.7952 -1.7447 11 1 3.1358 4.5240 -2.6899 12 1 3.8428 5.3489 -0.5222 13 6 3.2670 0.5777 2.3916 14 6 4.6466 0.0199 2.6295 15 8 5.4405 -0.0455 1.7149 16 7 4.9985 -0.4063 3.8587 17 6 6.3394 -0.9491 4.0899 18 1 7.0527 -0.4452 3.4378 19 6 6.3419 -2.4488 3.7865 20 6 6.7360 -0.7237 5.5504 21 6 6.8580 0.7548 5.8152 22 6 5.8189 1.4366 6.4210 23 6 5.9287 2.7936 6.6593 24 6 7.0793 3.4685 6.2957 25 6 8.1201 2.7859 5.6948 26 6 8.0105 1.4284 5.4570 27 6 9.1454 0.6840 4.8019 28 1 -1.0501 0.0000 -0.0003 29 1 3.0092 0.2762 -0.9902 30 1 3.0098 -0.9943 0.2564 31 1 1.5726 2.5637 -1.9963 32 1 2.5221 -0.1814 2.6299 33 1 3.1132 1.4499 3.0271 34 1 4.3638 -0.3537 4.5904 35 1 6.0593 -2.6093 2.7460 36 1 7.3397 -2.8524 3.9581 37 1 5.6286 -2.9526 4.4386 38 1 7.6928 -1.2080 5.7459 39 1 5.9738 -1.1482 6.2035 40 1 4.9200 0.9095 6.7048 41 1 5.1155 3.3269 7.1291 42 1 7.1649 4.5289 6.4814 43 1 9.0191 3.3129 5.4112 44 1 9.7961 0.2651 5.5695 45 1 9.7165 1.3699 4.1762 46 1 8.7446 -0.1211 4.1863 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491623888.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:56:22 Heat of formation + Delta-G solvation = 44.018637 kcal Electronic energy + Delta-G solvation = -26258.611814 eV Core-core repulsion = 22728.631026 eV Total energy + Delta-G solvation = -3529.980788 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.96844 -40.07965 -37.75931 -36.69981 -33.96103 -33.50174 -33.18940 -32.75316 -31.46454 -28.71934 -28.21009 -27.83949 -26.96782 -24.25584 -23.00729 -22.41891 -21.31776 -21.21087 -19.37396 -18.37659 -17.75269 -17.43656 -17.08523 -16.81657 -16.14297 -16.05199 -15.85101 -15.52364 -15.10119 -14.88822 -14.66982 -14.54134 -14.16312 -13.95074 -13.84265 -13.40391 -13.37709 -13.20515 -13.10595 -12.94574 -12.85961 -12.76849 -12.71048 -12.50938 -12.26317 -12.00556 -11.89206 -11.70627 -11.61075 -11.02266 -10.77937 -10.55480 -10.30772 -9.88093 -9.63313 -9.38037 -8.92573 -7.84926 -5.27822 0.50082 0.54851 1.41822 1.46644 1.53043 1.96976 2.22368 2.49966 2.54097 2.62652 2.88494 3.28868 3.79439 3.81666 3.94565 4.00243 4.09058 4.13338 4.20510 4.33843 4.35420 4.44369 4.52577 4.59044 4.60235 4.68534 4.77304 4.80507 4.85907 4.88239 4.92718 4.95257 4.99213 5.14688 5.25186 5.25865 5.35837 5.41352 5.60555 5.63409 5.66347 5.67516 5.73734 5.85251 6.20660 6.24457 6.81432 7.07338 7.37593 7.59269 7.79989 8.19800 9.15699 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.012638 B = 0.004120 C = 0.003584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2214.976872 B = 6794.448146 C = 7810.554591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.280 4.280 2 C -0.135 4.135 3 C 0.280 3.720 4 N -0.578 5.578 5 C -0.262 4.262 6 H 0.060 0.940 7 C -0.040 4.040 8 N -0.907 5.907 9 Si 0.954 3.046 10 H -0.291 1.291 11 H -0.290 1.290 12 H -0.276 1.276 13 C 0.130 3.870 14 C 0.487 3.513 15 O -0.574 6.574 16 N -0.715 5.715 17 C 0.144 3.856 18 H 0.057 0.943 19 C -0.156 4.156 20 C -0.077 4.077 21 C -0.090 4.090 22 C -0.118 4.118 23 C -0.137 4.137 24 C -0.136 4.136 25 C -0.139 4.139 26 C -0.100 4.100 27 C -0.118 4.118 28 H 0.226 0.774 29 H 0.057 0.943 30 H 0.050 0.950 31 H 0.248 0.752 32 H 0.091 0.909 33 H 0.085 0.915 34 H 0.409 0.591 35 H 0.030 0.970 36 H 0.081 0.919 37 H 0.076 0.924 38 H 0.103 0.897 39 H 0.100 0.900 40 H 0.142 0.858 41 H 0.135 0.865 42 H 0.131 0.869 43 H 0.126 0.874 44 H 0.088 0.912 45 H 0.061 0.939 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.879 -6.803 19.352 22.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.299 4.299 2 C -0.138 4.138 3 C 0.155 3.845 4 N -0.296 5.296 5 C -0.392 4.392 6 H 0.078 0.922 7 C -0.236 4.236 8 N -0.551 5.551 9 Si 0.783 3.217 10 H -0.218 1.218 11 H -0.215 1.215 12 H -0.202 1.202 13 C 0.000 4.000 14 C 0.272 3.728 15 O -0.452 6.452 16 N -0.369 5.369 17 C 0.039 3.961 18 H 0.075 0.925 19 C -0.214 4.214 20 C -0.114 4.114 21 C -0.090 4.090 22 C -0.135 4.135 23 C -0.155 4.155 24 C -0.154 4.154 25 C -0.157 4.157 26 C -0.100 4.100 27 C -0.175 4.175 28 H 0.243 0.757 29 H 0.076 0.924 30 H 0.068 0.932 31 H 0.058 0.942 32 H 0.109 0.891 33 H 0.103 0.897 34 H 0.245 0.755 35 H 0.049 0.951 36 H 0.100 0.900 37 H 0.095 0.905 38 H 0.121 0.879 39 H 0.119 0.881 40 H 0.159 0.841 41 H 0.153 0.847 42 H 0.149 0.851 43 H 0.144 0.856 44 H 0.107 0.893 45 H 0.080 0.920 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 9.395 -6.774 18.529 21.851 hybrid contribution -0.042 1.300 -0.701 1.477 sum 9.353 -5.475 17.827 20.863 Atomic orbital electron populations 1.24982 0.96184 1.05366 1.03347 1.24373 0.95712 0.95964 0.97764 1.17401 0.83288 0.90129 0.93721 1.43609 1.74321 1.09184 1.02515 1.19167 1.23428 0.91339 1.05281 0.92250 1.25465 0.96924 1.00950 1.00277 1.70235 1.20833 1.44501 1.19535 0.85553 0.78044 0.80024 0.78090 1.21781 1.21542 1.20220 1.20846 0.92252 1.00196 0.86707 1.22622 0.91512 0.76352 0.82327 1.90616 1.53930 1.56082 1.44612 1.46052 1.15668 1.64456 1.10764 1.20927 0.84464 0.94298 0.96373 0.92504 1.22127 1.03470 0.94783 1.01019 1.20901 1.04537 0.91535 0.94452 1.19892 0.93737 0.96596 0.98791 1.21316 0.98697 0.94627 0.98903 1.21409 0.98202 0.95123 1.00734 1.21382 0.94174 1.00555 0.99251 1.21268 0.99751 0.94331 1.00374 1.20078 0.96491 0.94382 0.99012 1.20905 0.96005 1.00166 1.00392 0.75720 0.92446 0.93209 0.94213 0.89083 0.89661 0.75527 0.95061 0.89997 0.90522 0.87921 0.88121 0.84071 0.84715 0.85144 0.85588 0.89325 0.92027 0.91428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.28 -12.39 19.25 74.32 1.43 -10.96 16 2 C -0.14 -6.67 11.43 31.13 0.36 -6.31 16 3 C 0.28 14.25 5.41 84.57 0.46 14.71 16 4 N -0.58 -29.55 1.97 -716.90 -1.42 -30.96 16 5 C -0.26 -14.95 9.64 84.04 0.81 -14.14 16 6 H 0.06 3.42 7.91 -2.91 -0.02 3.40 16 7 C -0.04 -2.26 4.86 84.86 0.41 -1.85 16 8 N -0.91 -53.40 9.48 21.65 0.21 -53.20 16 9 Si 0.95 47.13 29.60 68.60 2.03 49.16 16 10 H -0.29 -14.59 7.11 99.48 0.71 -13.88 16 11 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 12 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 13 C 0.13 5.18 6.16 85.63 0.53 5.70 16 14 C 0.49 18.46 7.89 87.66 0.69 19.15 16 15 O -0.57 -27.73 16.05 -3.04 -0.05 -27.78 16 16 N -0.71 -18.69 4.77 -442.53 -2.11 -20.80 16 17 C 0.14 3.32 2.31 45.00 0.10 3.43 16 18 H 0.06 1.73 5.92 -2.39 -0.01 1.71 16 19 C -0.16 -3.15 9.51 71.98 0.68 -2.46 16 20 C -0.08 -1.24 4.23 29.85 0.13 -1.11 16 21 C -0.09 -1.88 4.87 -19.86 -0.10 -1.98 16 22 C -0.12 -2.35 9.67 22.27 0.22 -2.13 16 23 C -0.14 -2.89 10.05 22.27 0.22 -2.67 16 24 C -0.14 -3.04 10.05 22.27 0.22 -2.81 16 25 C -0.14 -3.25 9.69 22.27 0.22 -3.03 16 26 C -0.10 -2.28 5.88 -19.86 -0.12 -2.40 16 27 C -0.12 -2.27 9.17 71.24 0.65 -1.62 16 28 H 0.23 7.89 7.80 -4.41 -0.03 7.86 16 29 H 0.06 3.30 6.60 -2.38 -0.02 3.28 16 30 H 0.05 2.32 8.11 -2.39 -0.02 2.30 16 31 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 32 H 0.09 3.14 8.07 -2.39 -0.02 3.12 16 33 H 0.09 3.23 8.04 -2.38 -0.02 3.21 16 34 H 0.41 7.91 8.63 -92.71 -0.80 7.11 16 35 H 0.03 0.84 8.14 -2.38 -0.02 0.82 16 36 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.10 1.32 7.26 -2.38 -0.02 1.31 16 39 H 0.10 1.15 8.01 -2.39 -0.02 1.13 16 40 H 0.14 2.06 8.04 -2.91 -0.02 2.03 16 41 H 0.13 2.31 8.06 -2.91 -0.02 2.28 16 42 H 0.13 2.43 8.06 -2.91 -0.02 2.41 16 43 H 0.13 2.56 8.06 -2.91 -0.02 2.54 16 44 H 0.09 1.29 8.14 -2.38 -0.02 1.27 16 45 H 0.06 1.20 8.07 -2.39 -0.02 1.19 16 46 H 0.07 1.36 5.25 -2.39 -0.01 1.34 16 Total: -1.00 -75.14 386.03 5.74 -69.40 By element: Atomic # 1 Polarization: 24.50 SS G_CDS: 0.17 Total: 24.66 kcal Atomic # 6 Polarization: -17.40 SS G_CDS: 6.92 Total: -10.49 kcal Atomic # 7 Polarization: -101.63 SS G_CDS: -3.32 Total: -104.96 kcal Atomic # 8 Polarization: -27.73 SS G_CDS: -0.05 Total: -27.78 kcal Atomic # 14 Polarization: 47.13 SS G_CDS: 2.03 Total: 49.16 kcal Total: -75.14 5.74 -69.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491623888.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.419 kcal (2) G-P(sol) polarization free energy of solvation -75.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds