Wall clock time and date at job start Tue Mar 31 2020 11:21:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86804 * 120.00106 * 2 1 4 4 H 1.48504 * 109.46776 * 239.99937 * 3 2 1 5 5 H 1.48497 * 109.47000 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47272 * 119.99657 * 3 2 1 7 7 C 1.37875 * 119.99960 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99845 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99990 * 359.97438 * 7 2 1 10 10 N 1.46905 * 109.46946 * 184.77343 * 9 7 2 11 11 C 1.46898 * 110.99816 * 189.00642 * 10 9 7 12 12 C 1.52998 * 109.47027 * 66.04776 * 11 10 9 13 13 N 1.46905 * 109.47284 * 180.02562 * 12 11 10 14 14 C 1.47010 * 111.00120 * 170.00380 * 13 12 11 15 15 C 1.53102 * 109.29337 * 177.63151 * 14 13 12 16 16 O 1.43010 * 109.26020 * 56.81887 * 15 14 13 17 17 C 1.43010 * 113.74297 * 301.33403 * 16 15 14 18 18 C 1.47014 * 111.03281 * 46.33851 * 13 12 11 19 19 C 1.46898 * 111.00002 * 65.05614 * 10 9 7 20 20 C 1.52997 * 109.47432 * 199.50126 * 19 10 9 21 21 H 1.09002 * 109.59664 * 306.15535 * 20 19 10 22 22 C 1.52934 * 109.60653 * 185.82896 * 20 19 10 23 23 C 1.53711 * 112.49025 * 209.96923 * 22 20 19 24 24 S 1.83394 * 104.96743 * 2.82481 * 23 22 20 25 25 C 1.55153 * 109.60353 * 66.47236 * 20 19 10 26 26 H 0.97005 * 120.00181 * 0.02562 * 1 2 3 27 27 H 1.08996 * 109.47115 * 64.77887 * 9 7 2 28 28 H 1.08997 * 109.47085 * 304.77423 * 9 7 2 29 29 H 1.08997 * 109.47298 * 306.04846 * 11 10 9 30 30 H 1.09006 * 109.47036 * 186.04795 * 11 10 9 31 31 H 1.08997 * 109.47025 * 59.99902 * 12 11 10 32 32 H 1.08996 * 109.47286 * 299.99797 * 12 11 10 33 33 H 1.08996 * 109.51107 * 57.67165 * 14 13 12 34 34 H 1.09004 * 109.50512 * 297.57898 * 14 13 12 35 35 H 1.08996 * 109.50645 * 176.75946 * 15 14 13 36 36 H 1.09002 * 109.50355 * 296.88730 * 15 14 13 37 37 H 1.09000 * 109.51233 * 178.60525 * 17 16 15 38 38 H 1.09000 * 109.50731 * 298.73605 * 17 16 15 39 39 H 1.08997 * 109.47208 * 62.42053 * 18 13 12 40 40 H 1.08995 * 109.55031 * 302.32795 * 18 13 12 41 41 H 1.09002 * 109.47306 * 319.49997 * 19 10 9 42 42 H 1.09005 * 109.47160 * 79.49889 * 19 10 9 43 43 H 1.09003 * 108.88791 * 330.75991 * 22 20 19 44 44 H 1.09000 * 108.88979 * 89.17482 * 22 20 19 45 45 H 1.09001 * 110.34245 * 121.69651 * 23 22 20 46 46 H 1.09003 * 110.34188 * 243.95193 * 23 22 20 47 47 H 1.08996 * 111.13449 * 279.28879 * 25 20 19 48 48 H 1.09000 * 111.13040 * 43.45971 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0044 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2509 -2.4991 0.0017 10 7 2.2015 -3.6132 0.1173 11 6 1.5293 -4.9025 -0.0918 12 6 1.0372 -4.9925 -1.5376 13 7 0.3644 -6.2816 -1.7466 14 6 -0.3266 -6.3111 -3.0439 15 6 -0.9627 -7.6888 -3.2470 16 8 -1.8457 -7.9661 -2.1567 17 6 -1.2054 -7.9471 -0.8781 18 6 -0.5718 -6.5720 -0.6509 19 6 2.8920 -3.5837 1.4136 20 6 4.1748 -4.4131 1.3272 21 1 3.9392 -5.4143 0.9663 22 6 4.8206 -4.5049 2.7104 23 6 6.3507 -4.6328 2.6376 24 16 6.7500 -4.5312 0.8505 25 6 5.1716 -3.7302 0.3539 26 1 -0.4851 0.8401 -0.0004 27 1 0.6897 -2.5954 -0.9277 28 1 0.5620 -2.5201 0.8461 29 1 0.6801 -4.9839 0.5868 30 1 2.2303 -5.7138 0.1047 31 1 1.8863 -4.9112 -2.2161 32 1 0.3362 -4.1813 -1.7340 33 1 0.3901 -6.1199 -3.8425 34 1 -1.1027 -5.5459 -3.0603 35 1 -1.5243 -7.6963 -4.1812 36 1 -0.1817 -8.4483 -3.2850 37 1 -1.9425 -8.1414 -0.0989 38 1 -0.4315 -8.7140 -0.8472 39 1 -1.3519 -5.8111 -0.6283 40 1 -0.0348 -6.5710 0.2975 41 1 3.1417 -2.5538 1.6689 42 1 2.2407 -4.0007 2.1818 43 1 4.5681 -3.6092 3.2779 44 1 4.4183 -5.3741 3.2307 45 1 6.8255 -3.8146 3.1790 46 1 6.6704 -5.5927 3.0433 47 1 4.9269 -3.9586 -0.6834 48 1 5.2070 -2.6534 0.5192 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000494343448.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:54 Heat of formation + Delta-G solvation = -39.311048 kcal Electronic energy + Delta-G solvation = -25222.468152 eV Core-core repulsion = 21824.317869 eV Total energy + Delta-G solvation = -3398.150283 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.177 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.60016 -37.97335 -36.10216 -34.76070 -32.58890 -31.25866 -30.11859 -29.17891 -27.30864 -26.41721 -24.88823 -24.05061 -23.15950 -22.14791 -20.55788 -19.94449 -19.27885 -16.76462 -16.52442 -16.22524 -16.12654 -15.67596 -15.16801 -15.07443 -14.89326 -14.68620 -14.46738 -14.06694 -13.63636 -13.51873 -13.25269 -12.95013 -12.61151 -12.36824 -12.17750 -12.01762 -11.84140 -11.64156 -11.40676 -11.27050 -11.07505 -11.01534 -10.92214 -10.76211 -10.72919 -10.57768 -10.46858 -10.07631 -9.85115 -9.69985 -9.61365 -9.26234 -8.52711 -8.22087 -7.54566 -7.35670 -6.11070 -4.12928 2.08833 2.57471 3.27433 3.32575 3.34921 3.73663 3.90443 4.35526 4.60641 4.78572 4.85449 4.94195 5.02929 5.05748 5.14691 5.18378 5.24058 5.26552 5.31547 5.42319 5.48274 5.54061 5.55784 5.63417 5.66443 5.81359 5.82991 5.84254 5.87056 5.93675 5.97942 6.01790 6.11013 6.23915 6.28334 6.35883 6.42940 6.66200 7.00621 7.06561 7.12157 7.21149 7.25279 7.71398 7.97465 8.07739 8.43714 8.94811 9.51981 10.99482 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.008016 B = 0.004760 C = 0.003256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3492.192440 B = 5880.953812 C = 8597.504043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.058 3.942 3 Si 0.895 3.105 4 H -0.275 1.275 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.509 4.509 8 H 0.063 0.937 9 C 0.192 3.808 10 N -0.534 5.534 11 C 0.055 3.945 12 C 0.060 3.940 13 N -0.537 5.537 14 C 0.017 3.983 15 C 0.066 3.934 16 O -0.389 6.389 17 C 0.065 3.935 18 C 0.011 3.989 19 C 0.074 3.926 20 C -0.085 4.085 21 H 0.079 0.921 22 C -0.126 4.126 23 C -0.062 4.062 24 S -0.335 6.335 25 C -0.029 4.029 26 H 0.262 0.738 27 H 0.030 0.970 28 H -0.008 1.008 29 H 0.024 0.976 30 H 0.068 0.932 31 H 0.083 0.917 32 H 0.045 0.955 33 H 0.085 0.915 34 H 0.043 0.957 35 H 0.095 0.905 36 H 0.057 0.943 37 H 0.094 0.906 38 H 0.057 0.943 39 H 0.043 0.957 40 H 0.090 0.910 41 H 0.092 0.908 42 H 0.023 0.977 43 H 0.073 0.927 44 H 0.073 0.927 45 H 0.085 0.915 46 H 0.091 0.909 47 H 0.110 0.890 48 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.069 -13.900 1.117 14.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.144 4.144 3 Si 0.723 3.277 4 H -0.201 1.201 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.548 4.548 8 H 0.082 0.918 9 C 0.067 3.933 10 N -0.259 5.259 11 C -0.073 4.073 12 C -0.068 4.068 13 N -0.262 5.262 14 C -0.111 4.111 15 C -0.012 4.012 16 O -0.308 6.308 17 C -0.012 4.012 18 C -0.117 4.117 19 C -0.056 4.056 20 C -0.106 4.106 21 H 0.097 0.903 22 C -0.165 4.165 23 C -0.211 4.211 24 S -0.108 6.108 25 C -0.177 4.177 26 H 0.072 0.928 27 H 0.048 0.952 28 H 0.010 0.990 29 H 0.042 0.958 30 H 0.086 0.914 31 H 0.101 0.899 32 H 0.064 0.936 33 H 0.104 0.896 34 H 0.062 0.938 35 H 0.113 0.887 36 H 0.076 0.924 37 H 0.113 0.887 38 H 0.076 0.924 39 H 0.061 0.939 40 H 0.108 0.892 41 H 0.110 0.890 42 H 0.042 0.958 43 H 0.092 0.908 44 H 0.091 0.909 45 H 0.104 0.896 46 H 0.110 0.890 47 H 0.128 0.872 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 4.419 -14.457 0.083 15.118 hybrid contribution -1.510 2.022 1.321 2.849 sum 2.910 -12.435 1.405 12.848 Atomic orbital electron populations 1.69939 1.06093 1.26966 1.50687 1.24973 0.94809 0.99283 0.95340 0.86610 0.79505 0.82889 0.78742 1.20088 1.21369 1.20240 1.21090 0.93422 0.89837 1.50442 0.91843 1.19769 0.90001 0.87336 0.96188 1.61980 1.31345 1.02190 1.30343 1.22132 0.96781 0.93575 0.94842 1.22163 0.98537 0.88074 0.97985 1.62288 1.29055 1.33330 1.01570 1.22759 0.97846 0.97737 0.92772 1.22649 0.93359 0.95277 0.89870 1.87956 1.36104 1.91645 1.15054 1.22678 0.97052 0.96056 0.85430 1.22870 0.95306 0.97347 0.96213 1.22016 0.92488 1.00786 0.90346 1.22073 0.95795 1.00222 0.92504 0.90260 1.21999 0.92714 1.03360 0.98458 1.23827 0.98264 1.04885 0.94081 1.87700 1.32026 1.81495 1.09593 1.24312 0.88519 1.01727 1.03146 0.92825 0.95175 0.99037 0.95811 0.91371 0.89883 0.93636 0.89615 0.93845 0.88699 0.92421 0.88746 0.92448 0.93875 0.89170 0.89009 0.95845 0.90779 0.90864 0.89627 0.89006 0.87163 0.88928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.76 13.29 55.43 0.74 -25.02 16 2 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 3 Si 0.89 20.91 29.54 -169.99 -5.02 15.89 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.51 -13.32 8.12 -34.44 -0.28 -13.60 16 8 H 0.06 1.63 7.43 -52.48 -0.39 1.24 16 9 C 0.19 4.61 4.58 -4.97 -0.02 4.58 16 10 N -0.53 -10.17 4.21 -236.07 -0.99 -11.16 16 11 C 0.06 0.91 4.06 -3.83 -0.02 0.89 16 12 C 0.06 0.96 5.22 -3.82 -0.02 0.94 16 13 N -0.54 -7.53 4.88 -234.31 -1.14 -8.67 16 14 C 0.02 0.22 5.62 -3.71 -0.02 0.20 16 15 C 0.07 0.73 7.01 37.21 0.26 0.99 16 16 O -0.39 -5.08 10.83 -35.23 -0.38 -5.46 16 17 C 0.06 0.74 7.01 37.21 0.26 1.00 16 18 C 0.01 0.15 4.94 -3.71 -0.02 0.13 16 19 C 0.07 1.26 4.01 -3.83 -0.02 1.24 16 20 C -0.08 -1.20 2.61 -89.52 -0.23 -1.44 16 21 H 0.08 1.13 6.63 -51.93 -0.34 0.79 16 22 C -0.13 -1.50 5.86 -26.40 -0.15 -1.66 16 23 C -0.06 -0.72 7.38 37.53 0.28 -0.44 16 24 S -0.33 -4.86 23.22 -107.50 -2.50 -7.36 16 25 C -0.03 -0.45 6.63 38.30 0.25 -0.19 16 26 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 27 H 0.03 0.78 6.11 -51.93 -0.32 0.46 16 28 H -0.01 -0.22 8.13 -51.93 -0.42 -0.64 16 29 H 0.02 0.40 6.26 -51.93 -0.32 0.08 16 30 H 0.07 1.04 6.55 -51.93 -0.34 0.70 16 31 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 32 H 0.05 0.85 6.32 -51.93 -0.33 0.53 16 33 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 34 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.09 1.15 6.06 -51.93 -0.31 0.83 16 41 H 0.09 1.78 6.55 -51.93 -0.34 1.44 16 42 H 0.02 0.39 8.00 -51.93 -0.42 -0.02 16 43 H 0.07 0.89 7.80 -51.93 -0.41 0.48 16 44 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 46 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 47 H 0.11 1.76 8.14 -51.93 -0.42 1.34 16 48 H 0.09 1.51 8.07 -51.93 -0.42 1.09 16 LS Contribution 375.72 15.07 5.66 5.66 Total: -1.00 -28.51 375.72 -12.03 -40.55 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -8.57 Total: 1.45 kcal Atomic # 6 Polarization: -6.06 SS G_CDS: 0.17 Total: -5.88 kcal Atomic # 7 Polarization: -43.45 SS G_CDS: -1.40 Total: -44.85 kcal Atomic # 8 Polarization: -5.08 SS G_CDS: -0.38 Total: -5.46 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 16 Polarization: -4.86 SS G_CDS: -2.50 Total: -7.36 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -28.51 -12.03 -40.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000494343448.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.235 kcal (2) G-P(sol) polarization free energy of solvation -28.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds