Wall clock time and date at job start Tue Mar 31 2020 11:12:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99658 * 2 1 4 4 H 1.48494 * 109.47419 * 270.00003 * 3 2 1 5 5 H 1.48495 * 109.47051 * 30.00261 * 3 2 1 6 6 H 1.48504 * 109.47023 * 149.99988 * 3 2 1 7 7 C 1.37875 * 120.00442 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00035 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00019 * 359.97438 * 7 2 1 10 10 N 1.46497 * 109.47360 * 180.02562 * 9 7 2 11 11 C 1.46507 * 120.00013 * 270.00174 * 10 9 7 12 12 C 1.50697 * 109.47095 * 270.00164 * 11 10 9 13 13 C 1.38230 * 119.62042 * 94.72747 * 12 11 10 14 14 C 1.38630 * 119.16153 * 179.71040 * 13 12 11 15 15 C 1.38670 * 118.41901 * 0.55026 * 14 13 12 16 16 C 1.38183 * 119.16654 * 359.73333 * 15 14 13 17 17 N 1.31853 * 119.61765 * 274.99723 * 12 11 10 18 18 C 1.34771 * 119.99977 * 90.00247 * 10 9 7 19 19 O 1.21286 * 119.99731 * 180.02562 * 18 10 9 20 20 C 1.50698 * 120.00507 * 0.02562 * 18 10 9 21 21 C 1.52993 * 109.47585 * 179.97438 * 20 18 10 22 22 H 1.09006 * 109.35463 * 54.72429 * 21 20 18 23 23 C 1.50060 * 109.36002 * 295.00482 * 21 20 18 24 24 C 1.29452 * 124.07388 * 222.79781 * 23 21 20 25 25 C 1.50070 * 124.07339 * 0.72572 * 24 23 21 26 26 C 1.53175 * 110.06164 * 342.43433 * 25 24 23 27 27 C 1.53020 * 109.24580 * 174.37693 * 21 20 18 28 28 H 0.96993 * 120.00440 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.47129 * 60.00247 * 9 7 2 30 30 H 1.09003 * 109.47454 * 300.00593 * 9 7 2 31 31 H 1.09005 * 109.46666 * 29.99813 * 11 10 9 32 32 H 1.08993 * 109.47242 * 149.99765 * 11 10 9 33 33 H 1.08000 * 120.41802 * 359.97438 * 13 12 11 34 34 H 1.08000 * 120.78860 * 180.25798 * 14 13 12 35 35 H 1.08004 * 120.42346 * 179.75471 * 15 14 13 36 36 H 1.07996 * 119.62059 * 180.02562 * 16 15 14 37 37 H 1.09002 * 109.46972 * 59.99768 * 20 18 10 38 38 H 1.09003 * 109.46627 * 300.00495 * 20 18 10 39 39 H 1.07995 * 117.96634 * 42.77262 * 23 21 20 40 40 H 1.08002 * 117.95997 * 180.43936 * 24 23 21 41 41 H 1.09008 * 109.35692 * 102.81449 * 25 24 23 42 42 H 1.08999 * 109.35595 * 222.40096 * 25 24 23 43 43 H 1.09002 * 109.83997 * 290.06104 * 26 25 24 44 44 H 1.09003 * 109.75816 * 169.44857 * 26 25 24 45 45 H 1.09004 * 109.64792 * 289.25793 * 27 21 20 46 46 H 1.08995 * 109.64257 * 49.89531 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 7 2.2032 -3.6126 -0.0005 11 6 2.6793 -4.1693 -1.2693 12 6 1.7627 -5.2835 -1.7044 13 6 0.7286 -5.0143 -2.5813 14 6 -0.1053 -6.0476 -2.9800 15 6 0.1261 -7.3164 -2.4705 16 6 1.1761 -7.5085 -1.5929 17 7 1.9530 -6.5028 -1.2401 18 6 2.6411 -4.1248 1.1666 19 8 3.4297 -5.0463 1.1666 20 6 2.1510 -3.5526 2.4718 21 6 2.7967 -4.3086 3.6346 22 1 3.8808 -4.2845 3.5237 23 6 2.3272 -5.7338 3.6232 24 6 1.9784 -6.3910 4.6826 25 6 1.9799 -5.8145 6.0681 26 6 2.8382 -4.5465 6.1087 27 6 2.4066 -3.6356 4.9524 28 1 -0.4850 0.8399 0.0004 29 1 0.6243 -2.5567 -0.8903 30 1 0.6248 -2.5571 0.8896 31 1 2.6870 -3.3876 -2.0289 32 1 3.6887 -4.5592 -1.1390 33 1 0.5748 -4.0126 -2.9545 34 1 -0.9187 -5.8677 -3.6673 35 1 -0.5060 -8.1441 -2.7562 36 1 1.3632 -8.4937 -1.1920 37 1 1.0674 -3.6551 2.5293 38 1 2.4198 -2.4978 2.5297 39 1 2.2767 -6.2428 2.6721 40 1 1.6623 -7.4166 4.5610 41 1 0.9579 -5.5726 6.3600 42 1 2.3883 -6.5475 6.7639 43 1 3.8903 -4.8081 5.9960 44 1 2.6886 -4.0305 7.0571 45 1 2.9117 -2.6732 5.0360 46 1 1.3269 -3.4901 4.9839 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000547651548.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:02 Heat of formation + Delta-G solvation = -2.570853 kcal Electronic energy + Delta-G solvation = -26405.109348 eV Core-core repulsion = 22873.108288 eV Total energy + Delta-G solvation = -3532.001060 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.05002 -39.23600 -37.78520 -35.04949 -32.96362 -32.24958 -32.13750 -31.26198 -30.71675 -27.83961 -27.15907 -25.45852 -23.35176 -22.82879 -22.34757 -21.93649 -21.20713 -18.23723 -17.63660 -16.83131 -16.51415 -16.15377 -15.94393 -15.47573 -15.40900 -15.24478 -14.48927 -14.28651 -13.99116 -13.72405 -13.29977 -13.09778 -12.90018 -12.65067 -12.45493 -12.34538 -12.26819 -11.81616 -11.76388 -11.62642 -11.48145 -11.27028 -10.96733 -10.92232 -10.78910 -10.53067 -10.23041 -10.16597 -9.83341 -9.76626 -9.63861 -9.11261 -8.98873 -8.68886 -8.63579 -8.52584 -7.70772 -6.20344 -4.28055 1.31311 1.53175 2.68823 3.21040 3.28837 3.31976 3.54442 3.81773 4.27607 4.36195 4.62663 4.94781 4.99438 5.01223 5.04465 5.09189 5.12819 5.26468 5.36551 5.43983 5.51116 5.62456 5.73827 5.77187 5.79984 5.81893 5.91312 5.99298 6.03096 6.09531 6.11404 6.16397 6.25438 6.33883 6.36963 6.40474 6.45598 6.66184 6.69376 6.76951 6.93622 7.08676 7.17830 7.32735 7.54874 7.74945 8.04140 8.31260 8.40270 8.79111 9.13021 9.40709 10.86132 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.007026 B = 0.006345 C = 0.003627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3984.516749 B = 4412.153451 C = 7718.691509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.066 3.934 3 Si 0.895 3.105 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.537 4.537 8 H 0.062 0.938 9 C 0.239 3.761 10 N -0.594 5.594 11 C 0.168 3.832 12 C 0.122 3.878 13 C -0.156 4.156 14 C -0.081 4.081 15 C -0.183 4.183 16 C 0.091 3.909 17 N -0.458 5.458 18 C 0.518 3.482 19 O -0.553 6.553 20 C -0.126 4.126 21 C -0.044 4.044 22 H 0.085 0.915 23 C -0.117 4.117 24 C -0.187 4.187 25 C -0.085 4.085 26 C -0.118 4.118 27 C -0.116 4.116 28 H 0.265 0.735 29 H 0.033 0.967 30 H 0.038 0.962 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.137 0.863 34 H 0.130 0.870 35 H 0.128 0.872 36 H 0.149 0.851 37 H 0.085 0.915 38 H 0.104 0.896 39 H 0.112 0.888 40 H 0.095 0.905 41 H 0.066 0.934 42 H 0.062 0.938 43 H 0.062 0.938 44 H 0.060 0.940 45 H 0.066 0.934 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.275 -10.178 2.277 10.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.137 4.137 3 Si 0.723 3.277 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.576 4.576 8 H 0.080 0.920 9 C 0.119 3.881 10 N -0.325 5.325 11 C 0.043 3.957 12 C -0.018 4.018 13 C -0.177 4.177 14 C -0.107 4.107 15 C -0.203 4.203 16 C -0.066 4.066 17 N -0.167 5.167 18 C 0.306 3.694 19 O -0.432 6.432 20 C -0.166 4.166 21 C -0.062 4.062 22 H 0.103 0.897 23 C -0.135 4.135 24 C -0.205 4.205 25 C -0.122 4.122 26 C -0.156 4.156 27 C -0.154 4.154 28 H 0.075 0.925 29 H 0.051 0.949 30 H 0.056 0.944 31 H 0.111 0.889 32 H 0.108 0.892 33 H 0.155 0.845 34 H 0.148 0.852 35 H 0.146 0.854 36 H 0.166 0.834 37 H 0.104 0.896 38 H 0.123 0.877 39 H 0.129 0.871 40 H 0.113 0.887 41 H 0.085 0.915 42 H 0.080 0.920 43 H 0.081 0.919 44 H 0.079 0.921 45 H 0.085 0.915 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.658 -10.657 2.862 11.054 hybrid contribution -0.657 1.111 -0.843 1.542 sum 0.000 -9.546 2.019 9.757 Atomic orbital electron populations 1.69921 1.06013 1.27293 1.49716 1.24935 0.94817 0.99238 0.94732 0.86534 0.79909 0.82994 0.78292 1.20540 1.21098 1.19713 1.21510 0.93660 0.90416 1.52015 0.91973 1.19422 0.87526 0.82587 0.98590 1.48173 1.46074 1.34652 1.03648 1.20097 0.96350 0.91793 0.87459 1.21938 0.94859 0.92828 0.92140 1.22125 0.95914 1.00497 0.99147 1.21539 0.98289 0.92764 0.98110 1.22080 1.00026 0.97979 1.00220 1.22755 0.91396 0.98035 0.94436 1.67653 1.27537 0.99666 1.21872 1.20519 0.80920 0.82247 0.85691 1.90621 1.35499 1.29427 1.87661 1.21640 1.01624 1.01886 0.91407 1.19864 1.00686 0.92177 0.93484 0.89743 1.22291 0.96723 0.95858 0.98653 1.21917 1.04537 0.99539 0.94473 1.20406 0.99877 0.96811 0.95105 1.21614 0.99799 0.95974 0.98213 1.21677 1.01548 0.98281 0.93892 0.92536 0.94895 0.94403 0.88918 0.89227 0.84509 0.85179 0.85399 0.83376 0.89621 0.87737 0.87054 0.88714 0.91523 0.91957 0.91908 0.92096 0.91542 0.91629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.94 13.29 55.43 0.74 -23.20 16 2 C 0.07 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.90 20.06 29.54 -169.99 -5.02 15.03 16 4 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 7 C -0.54 -13.49 9.28 -34.44 -0.32 -13.81 16 8 H 0.06 1.59 7.81 -52.48 -0.41 1.18 16 9 C 0.24 5.51 4.97 -5.20 -0.03 5.49 16 10 N -0.59 -12.44 2.44 -176.44 -0.43 -12.88 16 11 C 0.17 3.17 5.71 -5.19 -0.03 3.14 16 12 C 0.12 2.16 6.36 -82.59 -0.53 1.64 16 13 C -0.16 -2.43 9.72 -39.44 -0.38 -2.82 16 14 C -0.08 -1.06 10.18 -39.28 -0.40 -1.46 16 15 C -0.18 -2.29 10.11 -39.44 -0.40 -2.69 16 16 C 0.09 1.34 11.18 -17.55 -0.20 1.14 16 17 N -0.46 -8.31 10.27 -9.47 -0.10 -8.40 16 18 C 0.52 10.80 7.30 -10.99 -0.08 10.72 16 19 O -0.55 -12.34 13.87 5.55 0.08 -12.26 16 20 C -0.13 -2.33 3.68 -27.89 -0.10 -2.44 16 21 C -0.04 -0.72 2.11 -92.07 -0.19 -0.91 16 22 H 0.08 1.47 7.94 -51.93 -0.41 1.06 16 23 C -0.12 -1.94 8.42 -35.91 -0.30 -2.25 16 24 C -0.19 -2.68 9.80 -35.90 -0.35 -3.03 16 25 C -0.08 -1.03 6.12 -28.10 -0.17 -1.20 16 26 C -0.12 -1.43 6.02 -26.43 -0.16 -1.59 16 27 C -0.12 -1.61 5.30 -26.51 -0.14 -1.76 16 28 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 29 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 30 H 0.04 0.92 6.44 -51.93 -0.33 0.58 16 31 H 0.09 1.64 7.97 -51.93 -0.41 1.23 16 32 H 0.09 1.76 7.42 -51.93 -0.39 1.37 16 33 H 0.14 2.02 8.06 -52.49 -0.42 1.60 16 34 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 35 H 0.13 1.19 8.06 -52.48 -0.42 0.76 16 36 H 0.15 1.76 8.06 -52.49 -0.42 1.34 16 37 H 0.09 1.59 7.40 -51.93 -0.38 1.21 16 38 H 0.10 2.02 8.00 -51.93 -0.42 1.60 16 39 H 0.11 2.12 6.53 -52.49 -0.34 1.78 16 40 H 0.09 1.27 8.06 -52.49 -0.42 0.85 16 41 H 0.07 0.76 8.14 -51.92 -0.42 0.34 16 42 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.06 0.77 8.12 -51.93 -0.42 0.35 16 44 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 45 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 46 H 0.06 0.91 8.09 -51.93 -0.42 0.49 16 LS Contribution 377.44 15.07 5.69 5.69 Total: -1.00 -29.12 377.44 -10.23 -39.35 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -7.30 Total: 6.90 kcal Atomic # 6 Polarization: -6.35 SS G_CDS: -3.88 Total: -10.22 kcal Atomic # 7 Polarization: -44.69 SS G_CDS: 0.21 Total: -44.48 kcal Atomic # 8 Polarization: -12.34 SS G_CDS: 0.08 Total: -12.26 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.03 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -29.12 -10.23 -39.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000547651548.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.777 kcal (2) G-P(sol) polarization free energy of solvation -29.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds