Wall clock time and date at job start Tue Mar 31 2020 11:12:02
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31513 * 1
3 3 Si 1.86803 * 119.99658 * 2 1
4 4 H 1.48494 * 109.47419 * 270.00003 * 3 2 1
5 5 H 1.48495 * 109.47051 * 30.00261 * 3 2 1
6 6 H 1.48504 * 109.47023 * 149.99988 * 3 2 1
7 7 C 1.37875 * 120.00442 * 180.02562 * 2 1 3
8 8 H 1.08003 * 120.00035 * 179.97438 * 7 2 1
9 9 C 1.50697 * 120.00019 * 359.97438 * 7 2 1
10 10 N 1.46497 * 109.47360 * 180.02562 * 9 7 2
11 11 C 1.46507 * 120.00013 * 270.00174 * 10 9 7
12 12 C 1.50697 * 109.47095 * 270.00164 * 11 10 9
13 13 C 1.38230 * 119.62042 * 94.72747 * 12 11 10
14 14 C 1.38630 * 119.16153 * 179.71040 * 13 12 11
15 15 C 1.38670 * 118.41901 * 0.55026 * 14 13 12
16 16 C 1.38183 * 119.16654 * 359.73333 * 15 14 13
17 17 N 1.31853 * 119.61765 * 274.99723 * 12 11 10
18 18 C 1.34771 * 119.99977 * 90.00247 * 10 9 7
19 19 O 1.21286 * 119.99731 * 180.02562 * 18 10 9
20 20 C 1.50698 * 120.00507 * 0.02562 * 18 10 9
21 21 C 1.52993 * 109.47585 * 179.97438 * 20 18 10
22 22 H 1.09006 * 109.35463 * 54.72429 * 21 20 18
23 23 C 1.50060 * 109.36002 * 295.00482 * 21 20 18
24 24 C 1.29452 * 124.07388 * 222.79781 * 23 21 20
25 25 C 1.50070 * 124.07339 * 0.72572 * 24 23 21
26 26 C 1.53175 * 110.06164 * 342.43433 * 25 24 23
27 27 C 1.53020 * 109.24580 * 174.37693 * 21 20 18
28 28 H 0.96993 * 120.00440 * 359.97438 * 1 2 3
29 29 H 1.09000 * 109.47129 * 60.00247 * 9 7 2
30 30 H 1.09003 * 109.47454 * 300.00593 * 9 7 2
31 31 H 1.09005 * 109.46666 * 29.99813 * 11 10 9
32 32 H 1.08993 * 109.47242 * 149.99765 * 11 10 9
33 33 H 1.08000 * 120.41802 * 359.97438 * 13 12 11
34 34 H 1.08000 * 120.78860 * 180.25798 * 14 13 12
35 35 H 1.08004 * 120.42346 * 179.75471 * 15 14 13
36 36 H 1.07996 * 119.62059 * 180.02562 * 16 15 14
37 37 H 1.09002 * 109.46972 * 59.99768 * 20 18 10
38 38 H 1.09003 * 109.46627 * 300.00495 * 20 18 10
39 39 H 1.07995 * 117.96634 * 42.77262 * 23 21 20
40 40 H 1.08002 * 117.95997 * 180.43936 * 24 23 21
41 41 H 1.09008 * 109.35692 * 102.81449 * 25 24 23
42 42 H 1.08999 * 109.35595 * 222.40096 * 25 24 23
43 43 H 1.09002 * 109.83997 * 290.06104 * 26 25 24
44 44 H 1.09003 * 109.75816 * 169.44857 * 26 25 24
45 45 H 1.09004 * 109.64792 * 289.25793 * 27 21 20
46 46 H 1.08995 * 109.64257 * 49.89531 * 27 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 2.4966 2.0466 -1.4000
5 1 1.4465 2.6526 0.7001
6 1 3.5466 1.4403 0.7001
7 6 2.0046 -1.1940 -0.0005
8 1 3.0846 -1.1939 -0.0010
9 6 1.2512 -2.4991 -0.0005
10 7 2.2032 -3.6126 -0.0005
11 6 2.6793 -4.1693 -1.2693
12 6 1.7627 -5.2835 -1.7044
13 6 0.7286 -5.0143 -2.5813
14 6 -0.1053 -6.0476 -2.9800
15 6 0.1261 -7.3164 -2.4705
16 6 1.1761 -7.5085 -1.5929
17 7 1.9530 -6.5028 -1.2401
18 6 2.6411 -4.1248 1.1666
19 8 3.4297 -5.0463 1.1666
20 6 2.1510 -3.5526 2.4718
21 6 2.7967 -4.3086 3.6346
22 1 3.8808 -4.2845 3.5237
23 6 2.3272 -5.7338 3.6232
24 6 1.9784 -6.3910 4.6826
25 6 1.9799 -5.8145 6.0681
26 6 2.8382 -4.5465 6.1087
27 6 2.4066 -3.6356 4.9524
28 1 -0.4850 0.8399 0.0004
29 1 0.6243 -2.5567 -0.8903
30 1 0.6248 -2.5571 0.8896
31 1 2.6870 -3.3876 -2.0289
32 1 3.6887 -4.5592 -1.1390
33 1 0.5748 -4.0126 -2.9545
34 1 -0.9187 -5.8677 -3.6673
35 1 -0.5060 -8.1441 -2.7562
36 1 1.3632 -8.4937 -1.1920
37 1 1.0674 -3.6551 2.5293
38 1 2.4198 -2.4978 2.5297
39 1 2.2767 -6.2428 2.6721
40 1 1.6623 -7.4166 4.5610
41 1 0.9579 -5.5726 6.3600
42 1 2.3883 -6.5475 6.7639
43 1 3.8903 -4.8081 5.9960
44 1 2.6886 -4.0305 7.0571
45 1 2.9117 -2.6732 5.0360
46 1 1.3269 -3.4901 4.9839
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000547651548.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:12:02
Heat of formation + Delta-G solvation = -2.570853 kcal
Electronic energy + Delta-G solvation = -26405.109348 eV
Core-core repulsion = 22873.108288 eV
Total energy + Delta-G solvation = -3532.001060 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 314.174 amu
Computer time = 0.59 seconds
Orbital eigenvalues (eV)
-40.05002 -39.23600 -37.78520 -35.04949 -32.96362 -32.24958 -32.13750 -31.26198
-30.71675 -27.83961 -27.15907 -25.45852 -23.35176 -22.82879 -22.34757 -21.93649
-21.20713 -18.23723 -17.63660 -16.83131 -16.51415 -16.15377 -15.94393 -15.47573
-15.40900 -15.24478 -14.48927 -14.28651 -13.99116 -13.72405 -13.29977 -13.09778
-12.90018 -12.65067 -12.45493 -12.34538 -12.26819 -11.81616 -11.76388 -11.62642
-11.48145 -11.27028 -10.96733 -10.92232 -10.78910 -10.53067 -10.23041 -10.16597
-9.83341 -9.76626 -9.63861 -9.11261 -8.98873 -8.68886 -8.63579 -8.52584
-7.70772 -6.20344 -4.28055 1.31311 1.53175 2.68823 3.21040 3.28837
3.31976 3.54442 3.81773 4.27607 4.36195 4.62663 4.94781 4.99438
5.01223 5.04465 5.09189 5.12819 5.26468 5.36551 5.43983 5.51116
5.62456 5.73827 5.77187 5.79984 5.81893 5.91312 5.99298 6.03096
6.09531 6.11404 6.16397 6.25438 6.33883 6.36963 6.40474 6.45598
6.66184 6.69376 6.76951 6.93622 7.08676 7.17830 7.32735 7.54874
7.74945 8.04140 8.31260 8.40270 8.79111 9.13021 9.40709 10.86132
Molecular weight = 314.17amu
Principal moments of inertia in cm(-1)
A = 0.007026 B = 0.006345 C = 0.003627
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3984.516749 B = 4412.153451 C = 7718.691509
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.891 5.891
2 C 0.066 3.934
3 Si 0.895 3.105
4 H -0.279 1.279
5 H -0.285 1.285
6 H -0.272 1.272
7 C -0.537 4.537
8 H 0.062 0.938
9 C 0.239 3.761
10 N -0.594 5.594
11 C 0.168 3.832
12 C 0.122 3.878
13 C -0.156 4.156
14 C -0.081 4.081
15 C -0.183 4.183
16 C 0.091 3.909
17 N -0.458 5.458
18 C 0.518 3.482
19 O -0.553 6.553
20 C -0.126 4.126
21 C -0.044 4.044
22 H 0.085 0.915
23 C -0.117 4.117
24 C -0.187 4.187
25 C -0.085 4.085
26 C -0.118 4.118
27 C -0.116 4.116
28 H 0.265 0.735
29 H 0.033 0.967
30 H 0.038 0.962
31 H 0.093 0.907
32 H 0.089 0.911
33 H 0.137 0.863
34 H 0.130 0.870
35 H 0.128 0.872
36 H 0.149 0.851
37 H 0.085 0.915
38 H 0.104 0.896
39 H 0.112 0.888
40 H 0.095 0.905
41 H 0.066 0.934
42 H 0.062 0.938
43 H 0.062 0.938
44 H 0.060 0.940
45 H 0.066 0.934
46 H 0.065 0.935
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.275 -10.178 2.277 10.434
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.529 5.529
2 C -0.137 4.137
3 Si 0.723 3.277
4 H -0.205 1.205
5 H -0.211 1.211
6 H -0.197 1.197
7 C -0.576 4.576
8 H 0.080 0.920
9 C 0.119 3.881
10 N -0.325 5.325
11 C 0.043 3.957
12 C -0.018 4.018
13 C -0.177 4.177
14 C -0.107 4.107
15 C -0.203 4.203
16 C -0.066 4.066
17 N -0.167 5.167
18 C 0.306 3.694
19 O -0.432 6.432
20 C -0.166 4.166
21 C -0.062 4.062
22 H 0.103 0.897
23 C -0.135 4.135
24 C -0.205 4.205
25 C -0.122 4.122
26 C -0.156 4.156
27 C -0.154 4.154
28 H 0.075 0.925
29 H 0.051 0.949
30 H 0.056 0.944
31 H 0.111 0.889
32 H 0.108 0.892
33 H 0.155 0.845
34 H 0.148 0.852
35 H 0.146 0.854
36 H 0.166 0.834
37 H 0.104 0.896
38 H 0.123 0.877
39 H 0.129 0.871
40 H 0.113 0.887
41 H 0.085 0.915
42 H 0.080 0.920
43 H 0.081 0.919
44 H 0.079 0.921
45 H 0.085 0.915
46 H 0.084 0.916
Dipole moment (debyes) X Y Z Total
from point charges 0.658 -10.657 2.862 11.054
hybrid contribution -0.657 1.111 -0.843 1.542
sum 0.000 -9.546 2.019 9.757
Atomic orbital electron populations
1.69921 1.06013 1.27293 1.49716 1.24935 0.94817 0.99238 0.94732
0.86534 0.79909 0.82994 0.78292 1.20540 1.21098 1.19713 1.21510
0.93660 0.90416 1.52015 0.91973 1.19422 0.87526 0.82587 0.98590
1.48173 1.46074 1.34652 1.03648 1.20097 0.96350 0.91793 0.87459
1.21938 0.94859 0.92828 0.92140 1.22125 0.95914 1.00497 0.99147
1.21539 0.98289 0.92764 0.98110 1.22080 1.00026 0.97979 1.00220
1.22755 0.91396 0.98035 0.94436 1.67653 1.27537 0.99666 1.21872
1.20519 0.80920 0.82247 0.85691 1.90621 1.35499 1.29427 1.87661
1.21640 1.01624 1.01886 0.91407 1.19864 1.00686 0.92177 0.93484
0.89743 1.22291 0.96723 0.95858 0.98653 1.21917 1.04537 0.99539
0.94473 1.20406 0.99877 0.96811 0.95105 1.21614 0.99799 0.95974
0.98213 1.21677 1.01548 0.98281 0.93892 0.92536 0.94895 0.94403
0.88918 0.89227 0.84509 0.85179 0.85399 0.83376 0.89621 0.87737
0.87054 0.88714 0.91523 0.91957 0.91908 0.92096 0.91542 0.91629
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -23.94 13.29 55.43 0.74 -23.20 16
2 C 0.07 1.69 5.46 -17.82 -0.10 1.59 16
3 Si 0.90 20.06 29.54 -169.99 -5.02 15.03 16
4 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16
5 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16
6 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16
7 C -0.54 -13.49 9.28 -34.44 -0.32 -13.81 16
8 H 0.06 1.59 7.81 -52.48 -0.41 1.18 16
9 C 0.24 5.51 4.97 -5.20 -0.03 5.49 16
10 N -0.59 -12.44 2.44 -176.44 -0.43 -12.88 16
11 C 0.17 3.17 5.71 -5.19 -0.03 3.14 16
12 C 0.12 2.16 6.36 -82.59 -0.53 1.64 16
13 C -0.16 -2.43 9.72 -39.44 -0.38 -2.82 16
14 C -0.08 -1.06 10.18 -39.28 -0.40 -1.46 16
15 C -0.18 -2.29 10.11 -39.44 -0.40 -2.69 16
16 C 0.09 1.34 11.18 -17.55 -0.20 1.14 16
17 N -0.46 -8.31 10.27 -9.47 -0.10 -8.40 16
18 C 0.52 10.80 7.30 -10.99 -0.08 10.72 16
19 O -0.55 -12.34 13.87 5.55 0.08 -12.26 16
20 C -0.13 -2.33 3.68 -27.89 -0.10 -2.44 16
21 C -0.04 -0.72 2.11 -92.07 -0.19 -0.91 16
22 H 0.08 1.47 7.94 -51.93 -0.41 1.06 16
23 C -0.12 -1.94 8.42 -35.91 -0.30 -2.25 16
24 C -0.19 -2.68 9.80 -35.90 -0.35 -3.03 16
25 C -0.08 -1.03 6.12 -28.10 -0.17 -1.20 16
26 C -0.12 -1.43 6.02 -26.43 -0.16 -1.59 16
27 C -0.12 -1.61 5.30 -26.51 -0.14 -1.76 16
28 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16
29 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16
30 H 0.04 0.92 6.44 -51.93 -0.33 0.58 16
31 H 0.09 1.64 7.97 -51.93 -0.41 1.23 16
32 H 0.09 1.76 7.42 -51.93 -0.39 1.37 16
33 H 0.14 2.02 8.06 -52.49 -0.42 1.60 16
34 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16
35 H 0.13 1.19 8.06 -52.48 -0.42 0.76 16
36 H 0.15 1.76 8.06 -52.49 -0.42 1.34 16
37 H 0.09 1.59 7.40 -51.93 -0.38 1.21 16
38 H 0.10 2.02 8.00 -51.93 -0.42 1.60 16
39 H 0.11 2.12 6.53 -52.49 -0.34 1.78 16
40 H 0.09 1.27 8.06 -52.49 -0.42 0.85 16
41 H 0.07 0.76 8.14 -51.92 -0.42 0.34 16
42 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16
43 H 0.06 0.77 8.12 -51.93 -0.42 0.35 16
44 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16
45 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16
46 H 0.06 0.91 8.09 -51.93 -0.42 0.49 16
LS Contribution 377.44 15.07 5.69 5.69
Total: -1.00 -29.12 377.44 -10.23 -39.35
By element:
Atomic # 1 Polarization: 14.20 SS G_CDS: -7.30 Total: 6.90 kcal
Atomic # 6 Polarization: -6.35 SS G_CDS: -3.88 Total: -10.22 kcal
Atomic # 7 Polarization: -44.69 SS G_CDS: 0.21 Total: -44.48 kcal
Atomic # 8 Polarization: -12.34 SS G_CDS: 0.08 Total: -12.26 kcal
Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.03 kcal
Total LS contribution 5.69 Total: 5.69 kcal
Total: -29.12 -10.23 -39.35 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000547651548.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 36.777 kcal
(2) G-P(sol) polarization free energy of solvation -29.120 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.656 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.227 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.348 kcal
(6) G-S(sol) free energy of system = (1) + (5) -2.571 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.59 seconds