Wall clock time and date at job start Tue Mar 31 2020 11:12:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99658 * 2 1 4 4 H 1.48494 * 109.47419 * 270.00003 * 3 2 1 5 5 H 1.48495 * 109.47051 * 30.00261 * 3 2 1 6 6 H 1.48504 * 109.47023 * 149.99988 * 3 2 1 7 7 C 1.37875 * 120.00442 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00035 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00019 * 359.97438 * 7 2 1 10 10 N 1.46497 * 109.47360 * 180.02562 * 9 7 2 11 11 C 1.46507 * 120.00013 * 270.00174 * 10 9 7 12 12 C 1.50697 * 109.47095 * 270.00164 * 11 10 9 13 13 C 1.38230 * 119.62042 * 94.72747 * 12 11 10 14 14 C 1.38630 * 119.16153 * 179.71040 * 13 12 11 15 15 C 1.38670 * 118.41901 * 0.55026 * 14 13 12 16 16 C 1.38183 * 119.16654 * 359.73333 * 15 14 13 17 17 N 1.31853 * 119.61765 * 274.99723 * 12 11 10 18 18 C 1.34771 * 119.99977 * 90.00247 * 10 9 7 19 19 O 1.21286 * 119.99731 * 180.02562 * 18 10 9 20 20 C 1.50698 * 120.00507 * 0.02562 * 18 10 9 21 21 C 1.52993 * 109.47585 * 179.97438 * 20 18 10 22 22 H 1.09006 * 109.35463 * 54.72429 * 21 20 18 23 23 C 1.50060 * 109.36002 * 295.00482 * 21 20 18 24 24 C 1.29452 * 124.07388 * 222.79781 * 23 21 20 25 25 C 1.50070 * 124.07339 * 0.72572 * 24 23 21 26 26 C 1.53175 * 110.06164 * 342.43433 * 25 24 23 27 27 C 1.53020 * 109.24580 * 174.37693 * 21 20 18 28 28 H 0.96993 * 120.00440 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.47129 * 60.00247 * 9 7 2 30 30 H 1.09003 * 109.47454 * 300.00593 * 9 7 2 31 31 H 1.09005 * 109.46666 * 29.99813 * 11 10 9 32 32 H 1.08993 * 109.47242 * 149.99765 * 11 10 9 33 33 H 1.08000 * 120.41802 * 359.97438 * 13 12 11 34 34 H 1.08000 * 120.78860 * 180.25798 * 14 13 12 35 35 H 1.08004 * 120.42346 * 179.75471 * 15 14 13 36 36 H 1.07996 * 119.62059 * 180.02562 * 16 15 14 37 37 H 1.09002 * 109.46972 * 59.99768 * 20 18 10 38 38 H 1.09003 * 109.46627 * 300.00495 * 20 18 10 39 39 H 1.07995 * 117.96634 * 42.77262 * 23 21 20 40 40 H 1.08002 * 117.95997 * 180.43936 * 24 23 21 41 41 H 1.09008 * 109.35692 * 102.81449 * 25 24 23 42 42 H 1.08999 * 109.35595 * 222.40096 * 25 24 23 43 43 H 1.09002 * 109.83997 * 290.06104 * 26 25 24 44 44 H 1.09003 * 109.75816 * 169.44857 * 26 25 24 45 45 H 1.09004 * 109.64792 * 289.25793 * 27 21 20 46 46 H 1.08995 * 109.64257 * 49.89531 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 7 2.2032 -3.6126 -0.0005 11 6 2.6793 -4.1693 -1.2693 12 6 1.7627 -5.2835 -1.7044 13 6 0.7286 -5.0143 -2.5813 14 6 -0.1053 -6.0476 -2.9800 15 6 0.1261 -7.3164 -2.4705 16 6 1.1761 -7.5085 -1.5929 17 7 1.9530 -6.5028 -1.2401 18 6 2.6411 -4.1248 1.1666 19 8 3.4297 -5.0463 1.1666 20 6 2.1510 -3.5526 2.4718 21 6 2.7967 -4.3086 3.6346 22 1 3.8808 -4.2845 3.5237 23 6 2.3272 -5.7338 3.6232 24 6 1.9784 -6.3910 4.6826 25 6 1.9799 -5.8145 6.0681 26 6 2.8382 -4.5465 6.1087 27 6 2.4066 -3.6356 4.9524 28 1 -0.4850 0.8399 0.0004 29 1 0.6243 -2.5567 -0.8903 30 1 0.6248 -2.5571 0.8896 31 1 2.6870 -3.3876 -2.0289 32 1 3.6887 -4.5592 -1.1390 33 1 0.5748 -4.0126 -2.9545 34 1 -0.9187 -5.8677 -3.6673 35 1 -0.5060 -8.1441 -2.7562 36 1 1.3632 -8.4937 -1.1920 37 1 1.0674 -3.6551 2.5293 38 1 2.4198 -2.4978 2.5297 39 1 2.2767 -6.2428 2.6721 40 1 1.6623 -7.4166 4.5610 41 1 0.9579 -5.5726 6.3600 42 1 2.3883 -6.5475 6.7639 43 1 3.8903 -4.8081 5.9960 44 1 2.6886 -4.0305 7.0571 45 1 2.9117 -2.6732 5.0360 46 1 1.3269 -3.4901 4.9839 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000547651548.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:01 Heat of formation + Delta-G solvation = -16.362717 kcal Electronic energy + Delta-G solvation = -26405.707408 eV Core-core repulsion = 22873.108288 eV Total energy + Delta-G solvation = -3532.599120 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.39439 -40.63049 -39.08732 -36.76417 -34.73062 -33.70842 -33.32384 -32.58064 -31.85256 -29.43995 -28.75311 -26.87435 -24.93851 -24.27459 -23.55665 -23.07021 -22.49927 -19.87819 -18.89650 -18.57255 -17.97503 -17.55952 -17.29502 -16.92675 -16.76039 -16.54507 -16.23158 -15.78670 -15.16619 -14.94132 -14.64678 -14.38481 -14.22872 -13.99386 -13.91619 -13.68084 -13.52791 -13.42686 -13.18850 -13.02202 -12.93565 -12.74266 -12.63921 -12.51451 -12.30712 -12.06172 -11.73495 -11.66519 -11.36988 -10.99763 -10.80184 -10.63951 -10.47277 -10.34807 -9.93324 -9.83496 -9.43503 -8.18793 -6.33496 0.13898 0.40663 1.42743 1.45245 1.45807 1.54572 1.86723 2.30187 2.46242 3.01111 3.11402 3.40476 3.68971 3.83932 3.86636 3.90675 4.01963 4.09182 4.19979 4.26157 4.31848 4.40159 4.51165 4.52269 4.58180 4.62377 4.72821 4.78138 4.81005 4.85796 4.88670 4.94104 4.96306 5.08859 5.11070 5.19312 5.23772 5.24823 5.28697 5.46623 5.50915 5.67041 5.80917 5.83473 5.86181 6.07119 6.12580 6.59561 6.83163 7.14535 7.34517 7.47970 8.86746 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.007026 B = 0.006345 C = 0.003627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3984.516749 B = 4412.153451 C = 7718.691509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.025 3.975 3 Si 0.955 3.045 4 H -0.275 1.275 5 H -0.281 1.281 6 H -0.272 1.272 7 C -0.545 4.545 8 H 0.053 0.947 9 C 0.257 3.743 10 N -0.597 5.597 11 C 0.168 3.832 12 C 0.096 3.904 13 C -0.167 4.167 14 C -0.077 4.077 15 C -0.165 4.165 16 C 0.077 3.923 17 N -0.498 5.498 18 C 0.511 3.489 19 O -0.570 6.570 20 C -0.118 4.118 21 C -0.035 4.035 22 H 0.067 0.933 23 C -0.148 4.148 24 C -0.164 4.164 25 C -0.086 4.086 26 C -0.115 4.115 27 C -0.114 4.114 28 H 0.268 0.732 29 H 0.021 0.979 30 H 0.024 0.976 31 H 0.097 0.903 32 H 0.074 0.926 33 H 0.137 0.863 34 H 0.166 0.834 35 H 0.171 0.829 36 H 0.171 0.829 37 H 0.082 0.918 38 H 0.094 0.906 39 H 0.078 0.922 40 H 0.105 0.895 41 H 0.081 0.919 42 H 0.086 0.914 43 H 0.059 0.941 44 H 0.086 0.914 45 H 0.071 0.929 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.320 -10.875 3.067 11.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.175 4.175 3 Si 0.780 3.220 4 H -0.200 1.200 5 H -0.206 1.206 6 H -0.196 1.196 7 C -0.583 4.583 8 H 0.071 0.929 9 C 0.137 3.863 10 N -0.327 5.327 11 C 0.044 3.956 12 C -0.042 4.042 13 C -0.188 4.188 14 C -0.103 4.103 15 C -0.185 4.185 16 C -0.081 4.081 17 N -0.208 5.208 18 C 0.300 3.700 19 O -0.451 6.451 20 C -0.157 4.157 21 C -0.054 4.054 22 H 0.085 0.915 23 C -0.166 4.166 24 C -0.182 4.182 25 C -0.123 4.123 26 C -0.153 4.153 27 C -0.152 4.152 28 H 0.077 0.923 29 H 0.040 0.960 30 H 0.042 0.958 31 H 0.115 0.885 32 H 0.092 0.908 33 H 0.155 0.845 34 H 0.183 0.817 35 H 0.188 0.812 36 H 0.188 0.812 37 H 0.100 0.900 38 H 0.112 0.888 39 H 0.096 0.904 40 H 0.123 0.877 41 H 0.099 0.901 42 H 0.104 0.896 43 H 0.078 0.922 44 H 0.104 0.896 45 H 0.089 0.911 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.378 -11.358 3.641 11.933 hybrid contribution -0.376 1.182 -1.129 1.678 sum -0.755 -10.176 2.512 10.508 Atomic orbital electron populations 1.70006 1.07189 1.28168 1.50408 1.25602 0.95504 1.02111 0.94295 0.85599 0.78660 0.79309 0.78384 1.20011 1.20608 1.19628 1.21649 0.93287 0.91446 1.51940 0.92880 1.19044 0.87372 0.82710 0.97205 1.48174 1.45673 1.34253 1.04644 1.20099 0.96135 0.92651 0.86705 1.21649 0.95985 0.92554 0.94049 1.22208 0.95979 1.01519 0.99058 1.21974 0.98228 0.92203 0.97919 1.22511 0.98982 0.98946 0.98065 1.23261 0.91717 0.98114 0.94972 1.67543 1.29488 1.00466 1.23278 1.20934 0.80657 0.82022 0.86349 1.90598 1.36333 1.30179 1.87957 1.21602 1.01428 1.01360 0.91353 1.19768 0.99330 0.92325 0.93964 0.91476 1.22034 1.00295 0.96127 0.98143 1.22239 1.01092 0.99657 0.95186 1.20512 1.00928 0.97236 0.93617 1.21625 0.99583 0.95752 0.98311 1.21675 1.01611 0.98773 0.93104 0.92312 0.96044 0.95794 0.88512 0.90782 0.84490 0.81673 0.81159 0.81158 0.89988 0.88794 0.90379 0.87702 0.90052 0.89591 0.92190 0.89571 0.91065 0.91589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.77 13.29 21.45 0.28 -49.48 16 2 C 0.03 1.32 5.46 84.65 0.46 1.78 16 3 Si 0.95 41.22 29.54 68.60 2.03 43.24 16 4 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 5 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 6 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 7 C -0.54 -28.08 9.28 25.60 0.24 -27.84 16 8 H 0.05 2.79 7.81 -2.91 -0.02 2.77 16 9 C 0.26 12.42 4.97 85.63 0.43 12.85 16 10 N -0.60 -26.45 2.44 -830.51 -2.03 -28.47 16 11 C 0.17 6.78 5.71 85.63 0.49 7.27 16 12 C 0.10 3.54 6.36 42.55 0.27 3.81 16 13 C -0.17 -5.22 9.72 22.36 0.22 -5.00 16 14 C -0.08 -1.87 10.18 22.47 0.23 -1.64 16 15 C -0.17 -3.69 10.11 22.36 0.23 -3.46 16 16 C 0.08 2.18 11.18 84.67 0.95 3.12 16 17 N -0.50 -18.58 10.27 -183.89 -1.89 -20.46 16 18 C 0.51 22.65 7.30 87.66 0.64 23.29 16 19 O -0.57 -27.10 13.87 -3.05 -0.04 -27.14 16 20 C -0.12 -4.61 3.68 29.85 0.11 -4.50 16 21 C -0.04 -1.19 2.11 -11.74 -0.02 -1.22 16 22 H 0.07 2.46 7.94 -2.38 -0.02 2.44 16 23 C -0.15 -5.03 8.42 27.03 0.23 -4.80 16 24 C -0.16 -4.51 9.80 27.03 0.26 -4.24 16 25 C -0.09 -1.83 6.12 29.71 0.18 -1.65 16 26 C -0.12 -2.52 6.02 30.79 0.19 -2.33 16 27 C -0.11 -3.08 5.30 30.73 0.16 -2.92 16 28 H 0.27 13.75 8.31 -92.71 -0.77 12.98 16 29 H 0.02 1.08 8.07 -2.39 -0.02 1.06 16 30 H 0.02 1.22 6.44 -2.39 -0.02 1.20 16 31 H 0.10 3.67 7.97 -2.38 -0.02 3.65 16 32 H 0.07 3.15 7.42 -2.39 -0.02 3.13 16 33 H 0.14 4.14 8.06 -2.91 -0.02 4.12 16 34 H 0.17 2.78 8.06 -2.91 -0.02 2.76 16 35 H 0.17 2.35 8.06 -2.91 -0.02 2.33 16 36 H 0.17 3.83 8.06 -2.91 -0.02 3.81 16 37 H 0.08 3.22 7.40 -2.39 -0.02 3.21 16 38 H 0.09 3.82 8.00 -2.39 -0.02 3.80 16 39 H 0.08 3.16 6.53 -2.91 -0.02 3.14 16 40 H 0.10 2.65 8.06 -2.91 -0.02 2.63 16 41 H 0.08 1.57 8.14 -2.38 -0.02 1.55 16 42 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 43 H 0.06 1.36 8.12 -2.39 -0.02 1.34 16 44 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 45 H 0.07 1.83 8.14 -2.38 -0.02 1.81 16 46 H 0.07 1.77 8.09 -2.39 -0.02 1.75 16 Total: -1.00 -64.86 377.44 4.55 -60.31 By element: Atomic # 1 Polarization: 28.54 SS G_CDS: 0.95 Total: 29.48 kcal Atomic # 6 Polarization: -12.73 SS G_CDS: 5.25 Total: -7.47 kcal Atomic # 7 Polarization: -94.79 SS G_CDS: -3.63 Total: -98.42 kcal Atomic # 8 Polarization: -27.10 SS G_CDS: -0.04 Total: -27.14 kcal Atomic # 14 Polarization: 41.22 SS G_CDS: 2.03 Total: 43.24 kcal Total: -64.86 4.55 -60.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000547651548.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.947 kcal (2) G-P(sol) polarization free energy of solvation -64.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds