Wall clock time and date at job start Tue Mar 31 2020 10:45:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86795 * 119.99615 * 2 1 4 4 H 1.48500 * 109.46970 * 269.99332 * 3 2 1 5 5 H 1.48499 * 109.47635 * 29.99678 * 3 2 1 6 6 H 1.48508 * 109.47232 * 149.99946 * 3 2 1 7 7 C 1.37873 * 120.00152 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99737 * 0.02562 * 7 2 1 9 9 C 1.50697 * 119.99924 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.46951 * 180.02562 * 9 7 2 11 11 C 1.50705 * 109.47165 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99629 * 359.97438 * 11 10 9 13 13 N 1.34773 * 120.00282 * 180.02562 * 11 10 9 14 14 C 1.49879 * 126.19543 * 359.68284 * 13 11 10 15 15 C 1.51325 * 101.75762 * 153.62631 * 14 13 11 16 16 H 1.08992 * 110.47711 * 292.28982 * 15 14 13 17 17 C 1.50250 * 125.83896 * 155.26209 * 15 14 13 18 18 N 1.49674 * 104.76165 * 217.52967 * 17 15 14 19 19 C 1.39667 * 110.99873 * 245.94794 * 18 17 15 20 20 C 1.38910 * 120.07768 * 322.64133 * 19 18 17 21 21 C 1.38106 * 119.92809 * 179.77313 * 20 19 18 22 22 C 1.38297 * 120.06949 * 0.50398 * 21 20 19 23 23 C 1.38283 * 120.15172 * 359.74551 * 22 21 20 24 24 C 1.38107 * 120.07561 * 0.02562 * 23 22 21 25 25 C 1.50168 * 107.63030 * 7.60138 * 18 17 15 26 26 C 1.50809 * 102.11615 * 25.38060 * 25 18 17 27 27 H 1.08998 * 110.20842 * 69.19776 * 26 25 18 28 28 C 1.49484 * 126.20339 * 179.97438 * 13 11 10 29 29 H 0.96995 * 120.00441 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.47027 * 299.99296 * 9 7 2 31 31 H 1.08995 * 109.47488 * 59.99898 * 9 7 2 32 32 H 1.09000 * 109.47372 * 299.99688 * 10 9 7 33 33 H 1.09004 * 109.47686 * 59.99763 * 10 9 7 34 34 H 1.08995 * 110.94585 * 271.86529 * 14 13 11 35 35 H 1.08999 * 110.94465 * 35.57419 * 14 13 11 36 36 H 1.09002 * 110.38306 * 336.35500 * 17 15 14 37 37 H 1.09004 * 110.37985 * 98.70819 * 17 15 14 38 38 H 1.08003 * 120.03796 * 359.97438 * 20 19 18 39 39 H 1.07990 * 119.96958 * 180.25054 * 21 20 19 40 40 H 1.07997 * 119.91898 * 179.77097 * 22 21 20 41 41 H 1.07998 * 119.95973 * 180.02562 * 23 22 21 42 42 H 1.07995 * 120.03958 * 179.97438 * 24 23 22 43 43 H 1.08996 * 110.87236 * 267.22466 * 25 18 17 44 44 H 1.08997 * 110.87094 * 143.53442 * 25 18 17 45 45 H 1.08996 * 110.41780 * 291.43533 * 28 13 11 46 46 H 1.09005 * 110.41369 * 53.89435 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5116 -1.1939 0.0011 10 6 4.0216 -2.6364 0.0010 11 6 5.5286 -2.6364 0.0009 12 8 6.1350 -1.5861 0.0005 13 7 6.2026 -3.8036 0.0003 14 6 5.5977 -5.1749 0.0063 15 6 6.6845 -5.9942 -0.6552 16 1 6.7878 -5.7148 -1.7037 17 6 6.9043 -7.4700 -0.4788 18 7 8.3918 -7.6356 -0.4692 19 6 8.8222 -8.3578 -1.5845 20 6 8.0610 -9.4159 -2.0649 21 6 8.4871 -10.1250 -3.1707 22 6 9.6755 -9.7893 -3.7934 23 6 10.4383 -8.7399 -3.3147 24 6 10.0156 -8.0237 -2.2121 25 6 9.0020 -6.2636 -0.4483 26 6 7.9086 -5.4405 0.1851 27 1 7.7959 -5.7086 1.2355 28 6 7.6887 -3.9650 -0.0004 29 1 -0.4850 0.8400 -0.0004 30 1 3.8752 -0.6804 -0.8889 31 1 3.8746 -0.6799 0.8911 32 1 3.6580 -3.1505 0.8907 33 1 3.6586 -3.1502 -0.8892 34 1 5.4151 -5.5157 1.0254 35 1 4.6801 -5.1986 -0.5814 36 1 6.4787 -7.8069 0.4665 37 1 6.4663 -8.0212 -1.3110 38 1 7.1353 -9.6816 -1.5761 39 1 7.8938 -10.9450 -3.5472 40 1 10.0082 -10.3478 -4.6558 41 1 11.3656 -8.4802 -3.8036 42 1 10.6120 -7.2045 -1.8385 43 1 9.2128 -5.9168 -1.4599 44 1 9.9035 -6.2489 0.1642 45 1 8.1066 -3.6347 -0.9513 46 1 8.1320 -3.4079 0.8250 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000568999466.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:45:51 Heat of formation + Delta-G solvation = 28.181293 kcal Electronic energy + Delta-G solvation = -25445.800033 eV Core-core repulsion = 21915.132486 eV Total energy + Delta-G solvation = -3530.667547 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.51689 -39.60266 -38.37652 -36.01390 -33.51794 -32.27811 -31.77786 -31.26541 -30.47815 -29.00902 -27.20479 -26.21212 -24.85194 -22.83679 -21.96544 -21.06973 -20.61680 -20.46916 -18.83809 -17.83937 -17.14093 -16.95592 -16.08115 -15.85454 -15.57201 -15.32441 -14.97576 -14.58674 -14.49095 -14.18145 -14.04640 -13.77604 -13.30202 -13.24847 -12.92527 -12.65791 -12.60042 -12.39766 -12.29932 -11.88388 -11.84157 -11.76815 -11.40221 -11.25568 -11.16023 -10.97131 -10.54278 -10.22823 -10.17388 -10.05560 -9.78888 -9.28094 -9.25740 -9.18438 -8.63249 -8.51249 -8.18653 -6.03947 -4.02794 1.04789 1.06758 2.91154 3.05693 3.13364 3.37257 3.37387 3.43892 3.54946 3.62777 4.27956 4.48230 4.50207 4.53160 4.61389 4.65748 4.82227 4.82622 4.90918 4.97082 5.09680 5.13320 5.16759 5.17680 5.25147 5.31456 5.34375 5.42480 5.46984 5.49690 5.60880 5.64023 5.76134 5.77850 5.91849 6.01108 6.07555 6.08215 6.23579 6.24201 6.38178 6.45230 6.65855 6.89294 7.34681 7.41768 7.63727 7.78450 8.46947 8.58105 8.98681 9.59051 11.08805 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.027611 B = 0.002353 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.860450 B =11897.212752 C =12269.815686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.069 3.931 3 Si 0.877 3.123 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.261 1.261 7 C -0.525 4.525 8 H 0.073 0.927 9 C 0.001 3.999 10 C -0.116 4.116 11 C 0.528 3.472 12 O -0.538 6.538 13 N -0.637 5.637 14 C 0.128 3.872 15 C -0.147 4.147 16 H 0.088 0.912 17 C 0.059 3.941 18 N -0.475 5.475 19 C 0.111 3.889 20 C -0.157 4.157 21 C -0.092 4.092 22 C -0.153 4.153 23 C -0.092 4.092 24 C -0.164 4.164 25 C 0.062 3.938 26 C -0.133 4.133 27 H 0.096 0.904 28 C 0.132 3.868 29 H 0.263 0.737 30 H 0.019 0.981 31 H 0.024 0.976 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.077 0.923 35 H 0.087 0.913 36 H 0.093 0.907 37 H 0.082 0.918 38 H 0.127 0.873 39 H 0.122 0.878 40 H 0.119 0.881 41 H 0.121 0.879 42 H 0.125 0.875 43 H 0.069 0.931 44 H 0.094 0.906 45 H 0.066 0.934 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.648 -22.363 -4.065 30.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.132 4.132 3 Si 0.704 3.296 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.185 1.185 7 C -0.562 4.562 8 H 0.091 0.909 9 C -0.037 4.037 10 C -0.156 4.156 11 C 0.319 3.681 12 O -0.414 6.414 13 N -0.376 5.376 14 C 0.005 3.995 15 C -0.168 4.168 16 H 0.106 0.894 17 C -0.066 4.066 18 N -0.189 5.189 19 C 0.012 3.988 20 C -0.177 4.177 21 C -0.111 4.111 22 C -0.172 4.172 23 C -0.111 4.111 24 C -0.185 4.185 25 C -0.063 4.063 26 C -0.153 4.153 27 H 0.114 0.886 28 C 0.009 3.991 29 H 0.073 0.927 30 H 0.037 0.963 31 H 0.042 0.958 32 H 0.104 0.896 33 H 0.103 0.897 34 H 0.095 0.905 35 H 0.106 0.894 36 H 0.111 0.889 37 H 0.100 0.900 38 H 0.145 0.855 39 H 0.140 0.860 40 H 0.137 0.863 41 H 0.139 0.861 42 H 0.143 0.857 43 H 0.088 0.912 44 H 0.112 0.888 45 H 0.085 0.915 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 20.880 -21.794 -3.533 30.388 hybrid contribution 0.219 1.096 -0.602 1.269 sum 21.099 -20.698 -4.135 29.844 Atomic orbital electron populations 1.69910 1.06271 1.26983 1.51037 1.24970 0.94719 0.99232 0.94323 0.86798 0.80624 0.83393 0.78758 1.20238 1.21408 1.18541 1.21095 0.89200 0.94570 1.51379 0.90922 1.19386 0.96468 0.90152 0.97676 1.21662 0.87466 1.03231 1.03205 1.21324 0.91273 0.81227 0.74229 1.90666 1.70755 1.30537 1.49394 1.50087 1.05719 1.05795 1.75956 1.21590 0.95800 0.81286 1.00786 1.22853 0.97529 0.95505 1.00863 0.89370 1.22335 0.85957 0.94498 1.03829 1.62236 1.06800 1.14815 1.35015 1.19174 0.95164 0.95574 0.88890 1.20919 1.00770 0.97492 0.98557 1.21022 0.96132 0.98809 0.95115 1.21072 0.95933 0.98963 1.01250 1.21014 0.99256 0.95062 0.95743 1.21047 0.97511 1.02247 0.97706 1.22474 0.97171 0.85721 1.00977 1.22453 0.96037 0.95387 1.01382 0.88559 1.20987 0.82207 0.93578 1.02288 0.92705 0.96294 0.95802 0.89610 0.89717 0.90478 0.89430 0.88920 0.89957 0.85545 0.85953 0.86274 0.86056 0.85679 0.91250 0.88816 0.91518 0.90702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.00 13.96 55.43 0.77 -27.23 16 2 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 3 Si 0.88 22.68 27.47 -169.99 -4.67 18.02 16 4 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 6 H -0.26 -6.74 6.54 56.52 0.37 -6.37 16 7 C -0.52 -15.03 9.66 -34.44 -0.33 -15.36 16 8 H 0.07 2.16 7.99 -52.48 -0.42 1.75 16 9 C 0.00 0.03 3.33 -27.88 -0.09 -0.07 16 10 C -0.12 -2.27 4.70 -27.88 -0.13 -2.41 16 11 C 0.53 9.92 7.88 -10.98 -0.09 9.83 16 12 O -0.54 -12.24 16.35 5.56 0.09 -12.15 16 13 N -0.64 -8.91 3.43 -170.95 -0.59 -9.49 16 14 C 0.13 1.30 6.58 -3.00 -0.02 1.28 16 15 C -0.15 -1.25 2.98 -89.82 -0.27 -1.51 16 16 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 17 C 0.06 0.43 6.17 -3.64 -0.02 0.41 16 18 N -0.48 -3.94 5.40 -168.93 -0.91 -4.85 16 19 C 0.11 0.97 5.81 -83.79 -0.49 0.48 16 20 C -0.16 -1.27 8.65 -39.38 -0.34 -1.61 16 21 C -0.09 -0.68 10.04 -39.61 -0.40 -1.08 16 22 C -0.15 -1.12 10.04 -39.54 -0.40 -1.51 16 23 C -0.09 -0.69 10.04 -39.61 -0.40 -1.09 16 24 C -0.16 -1.35 8.69 -39.38 -0.34 -1.69 16 25 C 0.06 0.47 5.23 -3.09 -0.02 0.45 16 26 C -0.13 -1.13 2.92 -90.04 -0.26 -1.39 16 27 H 0.10 0.83 8.12 -51.93 -0.42 0.40 16 28 C 0.13 1.51 6.80 -3.72 -0.03 1.49 16 29 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 30 H 0.02 0.49 7.53 -51.93 -0.39 0.10 16 31 H 0.02 0.63 7.16 -51.93 -0.37 0.25 16 32 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 33 H 0.08 1.54 7.92 -51.93 -0.41 1.13 16 34 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.09 0.86 7.59 -51.93 -0.39 0.47 16 36 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.08 0.56 5.74 -51.93 -0.30 0.26 16 38 H 0.13 0.86 6.67 -52.48 -0.35 0.51 16 39 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 40 H 0.12 0.64 8.06 -52.49 -0.42 0.22 16 41 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 42 H 0.13 0.88 6.44 -52.49 -0.34 0.54 16 43 H 0.07 0.53 6.70 -51.93 -0.35 0.18 16 44 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 46 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 LS Contribution 363.71 15.07 5.48 5.48 Total: -1.00 -34.61 363.71 -10.68 -45.29 By element: Atomic # 1 Polarization: 3.91 SS G_CDS: -7.14 Total: -3.23 kcal Atomic # 6 Polarization: -8.12 SS G_CDS: -3.72 Total: -11.83 kcal Atomic # 7 Polarization: -40.84 SS G_CDS: -0.73 Total: -41.57 kcal Atomic # 8 Polarization: -12.24 SS G_CDS: 0.09 Total: -12.15 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -4.67 Total: 18.02 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.61 -10.68 -45.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568999466.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.468 kcal (2) G-P(sol) polarization free energy of solvation -34.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds