Wall clock time and date at job start Tue Mar 31 2020 10:57:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86797 * 119.99885 * 2 1 4 4 H 1.48502 * 109.47626 * 275.31131 * 3 2 1 5 5 H 1.48496 * 109.47292 * 35.31761 * 3 2 1 6 6 H 1.48501 * 109.46822 * 155.31161 * 3 2 1 7 7 C 1.39932 * 119.99974 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99772 * 346.28624 * 7 2 1 9 9 C 1.41406 * 120.00146 * 166.28260 * 7 2 1 10 10 C 1.40778 * 120.20930 * 331.41046 * 9 7 2 11 11 C 1.37641 * 119.88369 * 180.02562 * 10 9 7 12 12 C 1.38542 * 120.31933 * 359.73458 * 11 10 9 13 13 C 1.39244 * 120.42796 * 0.51749 * 12 11 10 14 14 N 1.39954 * 119.94632 * 179.76357 * 13 12 11 15 15 C 1.34779 * 119.99872 * 326.48482 * 14 13 12 16 16 O 1.21586 * 119.99900 * 354.97000 * 15 14 13 17 17 N 1.34778 * 119.99827 * 174.96428 * 15 14 13 18 18 C 1.46497 * 120.00087 * 179.97438 * 17 15 14 19 19 C 1.52995 * 109.47332 * 180.02562 * 18 17 15 20 20 C 1.56126 * 116.03537 * 297.90925 * 19 18 17 21 21 C 1.54580 * 104.67942 * 200.01519 * 20 19 18 22 22 C 1.55927 * 104.64229 * 359.97438 * 21 20 19 23 23 C 1.55920 * 104.49768 * 289.72056 * 22 21 20 24 24 C 1.54719 * 104.64445 * 70.32644 * 23 22 21 25 25 C 1.56949 * 116.22658 * 180.02562 * 19 18 17 26 26 C 1.38280 * 120.10527 * 359.48911 * 13 12 11 27 27 H 0.97006 * 120.00089 * 0.02562 * 1 2 3 28 28 H 1.07995 * 120.06002 * 0.03024 * 10 9 7 29 29 H 1.07999 * 119.84118 * 179.97438 * 11 10 9 30 30 H 1.07997 * 119.78519 * 180.28405 * 12 11 10 31 31 H 0.97000 * 120.00034 * 146.48662 * 14 13 12 32 32 H 0.96999 * 120.00178 * 0.02562 * 17 15 14 33 33 H 1.09006 * 109.46692 * 60.00133 * 18 17 15 34 34 H 1.09000 * 109.47392 * 300.00915 * 18 17 15 35 35 H 1.09007 * 110.40823 * 81.20526 * 20 19 18 36 36 H 1.08999 * 110.46402 * 318.86176 * 20 19 18 37 37 H 1.08997 * 110.40646 * 241.18976 * 21 20 19 38 38 H 1.09003 * 110.50016 * 118.81952 * 21 20 19 39 39 H 1.08998 * 115.92407 * 160.02685 * 22 21 20 40 40 H 1.09003 * 110.40128 * 189.06408 * 23 22 21 41 41 H 1.08997 * 110.40840 * 311.48796 * 23 22 21 42 42 H 1.09006 * 110.43843 * 241.18981 * 24 23 22 43 43 H 1.08997 * 110.46663 * 118.82030 * 24 23 22 44 44 H 1.09006 * 112.02673 * 62.87254 * 25 19 18 45 45 H 1.08995 * 112.02454 * 296.43003 * 25 19 18 46 46 H 1.08001 * 120.15434 * 180.23683 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3776 2.1113 -1.3940 5 1 1.5004 2.6176 0.8094 6 1 3.5914 1.4103 0.5848 7 6 2.0080 -1.2119 -0.0005 8 1 1.4910 -2.1339 0.2208 9 6 3.3918 -1.2292 -0.2909 10 6 3.9522 -0.2460 -1.1282 11 6 5.2999 -0.2696 -1.4068 12 6 6.1095 -1.2535 -0.8628 13 6 5.5681 -2.2354 -0.0372 14 7 6.3943 -3.2275 0.5030 15 6 7.4497 -3.6826 -0.2011 16 8 7.6314 -3.2989 -1.3404 17 7 8.3036 -4.5629 0.3579 18 6 9.4504 -5.0580 -0.4076 19 6 10.2525 -6.0373 0.4516 20 6 10.8777 -5.4510 1.7566 21 6 12.0045 -6.4410 2.1303 22 6 11.9550 -7.5326 1.0179 23 6 10.6350 -8.3143 1.2966 24 6 9.5072 -7.3239 0.9215 25 6 11.5245 -6.6669 -0.2185 26 6 4.2164 -2.2286 0.2543 27 1 -0.4850 0.8401 -0.0004 28 1 3.3259 0.5255 -1.5511 29 1 5.7291 0.4848 -2.0496 30 1 7.1666 -1.2612 -1.0835 31 1 6.2075 -3.5876 1.3841 32 1 8.1584 -4.8693 1.2667 33 1 10.0859 -4.2196 -0.6930 34 1 9.0964 -5.5672 -1.3040 35 1 10.1311 -5.4081 2.5497 36 1 11.2896 -4.4593 1.5696 37 1 11.8119 -6.8849 3.1069 38 1 12.9715 -5.9380 2.1263 39 1 12.8584 -8.1303 0.8963 40 1 10.5814 -9.2049 0.6704 41 1 10.5689 -8.5851 2.3504 42 1 8.8862 -7.1072 1.7907 43 1 8.8990 -7.7276 0.1121 44 1 12.2703 -5.9124 -0.4692 45 1 11.2697 -7.2836 -1.0803 46 1 3.7963 -2.9876 0.8977 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575222407.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:24 Heat of formation + Delta-G solvation = -13.383359 kcal Electronic energy + Delta-G solvation = -25431.611972 eV Core-core repulsion = 21899.142046 eV Total energy + Delta-G solvation = -3532.469925 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.80160 -39.83341 -37.60573 -34.85666 -34.28806 -33.16358 -30.79656 -30.51321 -30.16988 -28.45339 -28.21164 -25.22771 -25.01600 -22.49529 -21.87459 -21.06781 -20.42720 -19.84909 -18.75989 -18.04835 -17.73805 -16.20806 -15.91714 -15.80391 -15.37473 -15.34193 -15.14052 -14.57251 -14.35277 -13.95401 -13.60069 -13.20347 -12.91466 -12.73340 -12.61203 -12.59031 -12.07708 -11.98976 -11.66636 -11.56034 -11.51228 -11.24174 -11.17904 -11.13947 -10.99612 -10.67686 -10.63536 -10.57616 -10.20972 -10.17195 -9.72377 -9.59090 -9.33440 -8.97956 -8.93846 -7.63232 -7.05248 -6.88253 -4.45998 2.52173 2.68601 2.90688 3.16088 3.26918 3.36720 3.57404 4.03298 4.05947 4.06841 4.08955 4.51164 4.58809 4.64155 4.79171 4.80887 4.99621 5.01039 5.08530 5.11134 5.38269 5.43553 5.46945 5.59846 5.60245 5.66011 5.66423 5.73973 5.76974 5.80855 5.91635 6.01308 6.04250 6.07114 6.38480 6.44953 6.51857 6.56551 6.74606 6.80109 7.04977 7.32832 7.42532 7.63840 7.74086 7.90264 8.14236 8.30394 8.39517 8.67425 8.83696 8.91972 10.14440 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.034865 B = 0.002384 C = 0.002329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.908791 B =11739.729918 C =12021.234313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.816 5.816 2 C 0.082 3.918 3 Si 0.915 3.085 4 H -0.272 1.272 5 H -0.295 1.295 6 H -0.241 1.241 7 C -0.447 4.447 8 H 0.089 0.911 9 C 0.106 3.894 10 C -0.244 4.244 11 C -0.068 4.068 12 C -0.229 4.229 13 C 0.187 3.813 14 N -0.683 5.683 15 C 0.700 3.300 16 O -0.571 6.571 17 N -0.747 5.747 18 C 0.172 3.828 19 C -0.089 4.089 20 C -0.114 4.114 21 C -0.120 4.120 22 C -0.105 4.105 23 C -0.119 4.119 24 C -0.114 4.114 25 C -0.112 4.112 26 C -0.235 4.235 27 H 0.284 0.716 28 H 0.098 0.902 29 H 0.097 0.903 30 H 0.109 0.891 31 H 0.398 0.602 32 H 0.393 0.607 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.097 0.903 40 H 0.063 0.937 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.066 0.934 44 H 0.072 0.928 45 H 0.072 0.928 46 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.325 -13.024 5.491 25.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.136 4.136 3 Si 0.743 3.257 4 H -0.199 1.199 5 H -0.223 1.223 6 H -0.164 1.164 7 C -0.476 4.476 8 H 0.107 0.893 9 C 0.103 3.897 10 C -0.263 4.263 11 C -0.087 4.087 12 C -0.250 4.250 13 C 0.094 3.906 14 N -0.329 5.329 15 C 0.401 3.599 16 O -0.447 6.447 17 N -0.403 5.403 18 C 0.048 3.952 19 C -0.090 4.090 20 C -0.152 4.152 21 C -0.158 4.158 22 C -0.123 4.123 23 C -0.157 4.157 24 C -0.152 4.152 25 C -0.150 4.150 26 C -0.257 4.257 27 H 0.095 0.905 28 H 0.116 0.884 29 H 0.115 0.885 30 H 0.127 0.873 31 H 0.232 0.768 32 H 0.227 0.773 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.116 0.884 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.085 0.915 44 H 0.090 0.910 45 H 0.091 0.909 46 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 21.253 -12.602 4.464 25.108 hybrid contribution -0.045 0.350 0.884 0.952 sum 21.208 -12.252 5.348 25.069 Atomic orbital electron populations 1.69667 1.08003 1.30103 1.36257 1.26153 0.94805 1.01714 0.90907 0.86280 0.81229 0.79567 0.78653 1.19877 1.22334 1.16399 1.19437 0.91543 0.95618 1.41006 0.89275 1.17470 0.93005 0.90338 0.88905 1.20986 0.95084 1.03962 1.06302 1.20475 0.93574 0.96822 0.97808 1.20369 0.99190 0.97985 1.07501 1.17291 0.88834 0.87543 0.96922 1.42633 1.28377 1.41450 1.20438 1.15938 0.79894 0.79417 0.84681 1.90945 1.75373 1.61599 1.16822 1.45035 1.28511 1.48766 1.18010 1.20626 0.85687 0.95714 0.93209 1.23118 0.95517 0.94817 0.95532 1.22649 0.97605 0.98650 0.96289 1.22615 0.98550 0.96406 0.98196 1.23541 0.97381 0.96207 0.95194 1.22621 0.94238 0.97741 1.01060 1.22625 0.97170 0.94475 1.00881 1.23510 0.95911 0.98457 0.97122 1.20646 0.90277 1.05340 1.09416 0.90550 0.88404 0.88519 0.87331 0.76847 0.77341 0.91331 0.91348 0.91778 0.91576 0.91806 0.91890 0.88435 0.91861 0.91768 0.91752 0.91530 0.90950 0.90941 0.87964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -22.06 13.93 55.55 0.77 -21.29 16 2 C 0.08 2.19 5.46 -17.34 -0.09 2.09 16 3 Si 0.91 21.22 24.37 -169.99 -4.14 17.08 16 4 H -0.27 -6.17 6.76 56.52 0.38 -5.79 16 5 H -0.30 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.24 -5.68 6.51 56.52 0.37 -5.31 16 7 C -0.45 -12.23 9.61 -37.74 -0.36 -12.59 16 8 H 0.09 2.54 8.06 -52.49 -0.42 2.12 16 9 C 0.11 2.75 5.18 -106.85 -0.55 2.20 16 10 C -0.24 -6.09 6.94 -38.84 -0.27 -6.36 16 11 C -0.07 -1.57 10.02 -39.69 -0.40 -1.97 16 12 C -0.23 -5.26 8.66 -39.10 -0.34 -5.59 16 13 C 0.19 4.07 6.27 -83.76 -0.52 3.55 16 14 N -0.68 -11.68 5.34 -14.27 -0.08 -11.75 16 15 C 0.70 11.87 8.30 -86.91 -0.72 11.15 16 16 O -0.57 -12.15 14.02 5.29 0.07 -12.08 16 17 N -0.75 -8.79 5.38 -65.23 -0.35 -9.14 16 18 C 0.17 1.82 5.50 -4.05 -0.02 1.80 16 19 C -0.09 -0.69 1.01 -149.13 -0.15 -0.84 16 20 C -0.11 -0.82 5.64 -24.23 -0.14 -0.96 16 21 C -0.12 -0.75 6.21 -24.34 -0.15 -0.90 16 22 C -0.11 -0.64 5.19 -85.35 -0.44 -1.08 16 23 C -0.12 -0.75 6.21 -24.27 -0.15 -0.90 16 24 C -0.11 -0.82 5.66 -24.26 -0.14 -0.96 16 25 C -0.11 -0.77 6.11 -22.45 -0.14 -0.91 16 26 C -0.23 -5.48 9.70 -38.69 -0.38 -5.86 16 27 H 0.28 6.98 8.30 -40.82 -0.34 6.64 16 28 H 0.10 2.42 4.22 -52.49 -0.22 2.20 16 29 H 0.10 1.98 8.06 -52.49 -0.42 1.56 16 30 H 0.11 2.48 6.40 -52.49 -0.34 2.14 16 31 H 0.40 5.31 8.83 -40.82 -0.36 4.95 16 32 H 0.39 3.56 8.21 -40.82 -0.34 3.23 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.06 0.44 7.84 -51.92 -0.41 0.04 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.38 7.83 -51.93 -0.41 -0.03 16 38 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 39 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.06 0.38 7.83 -51.93 -0.41 -0.02 16 42 H 0.06 0.45 7.84 -51.93 -0.41 0.04 16 43 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 46 H 0.10 2.21 8.06 -52.49 -0.42 1.79 16 LS Contribution 359.86 15.07 5.42 5.42 Total: -1.00 -31.06 359.86 -10.41 -41.47 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: -7.14 Total: 8.42 kcal Atomic # 6 Polarization: -13.17 SS G_CDS: -4.97 Total: -18.13 kcal Atomic # 7 Polarization: -42.53 SS G_CDS: 0.35 Total: -42.19 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: 0.07 Total: -12.08 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.14 Total: 17.08 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.06 -10.41 -41.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575222407.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.090 kcal (2) G-P(sol) polarization free energy of solvation -31.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds