Wall clock time and date at job start Tue Mar 31 2020 10:57:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86797 * 119.99885 * 2 1 4 4 H 1.48502 * 109.47626 * 275.31131 * 3 2 1 5 5 H 1.48496 * 109.47292 * 35.31761 * 3 2 1 6 6 H 1.48501 * 109.46822 * 155.31161 * 3 2 1 7 7 C 1.39932 * 119.99974 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99772 * 346.28624 * 7 2 1 9 9 C 1.41406 * 120.00146 * 166.28260 * 7 2 1 10 10 C 1.40778 * 120.20930 * 331.41046 * 9 7 2 11 11 C 1.37641 * 119.88369 * 180.02562 * 10 9 7 12 12 C 1.38542 * 120.31933 * 359.73458 * 11 10 9 13 13 C 1.39244 * 120.42796 * 0.51749 * 12 11 10 14 14 N 1.39954 * 119.94632 * 179.76357 * 13 12 11 15 15 C 1.34779 * 119.99872 * 326.48482 * 14 13 12 16 16 O 1.21586 * 119.99900 * 354.97000 * 15 14 13 17 17 N 1.34778 * 119.99827 * 174.96428 * 15 14 13 18 18 C 1.46497 * 120.00087 * 179.97438 * 17 15 14 19 19 C 1.52995 * 109.47332 * 180.02562 * 18 17 15 20 20 C 1.56126 * 116.03537 * 297.90925 * 19 18 17 21 21 C 1.54580 * 104.67942 * 200.01519 * 20 19 18 22 22 C 1.55927 * 104.64229 * 359.97438 * 21 20 19 23 23 C 1.55920 * 104.49768 * 289.72056 * 22 21 20 24 24 C 1.54719 * 104.64445 * 70.32644 * 23 22 21 25 25 C 1.56949 * 116.22658 * 180.02562 * 19 18 17 26 26 C 1.38280 * 120.10527 * 359.48911 * 13 12 11 27 27 H 0.97006 * 120.00089 * 0.02562 * 1 2 3 28 28 H 1.07995 * 120.06002 * 0.03024 * 10 9 7 29 29 H 1.07999 * 119.84118 * 179.97438 * 11 10 9 30 30 H 1.07997 * 119.78519 * 180.28405 * 12 11 10 31 31 H 0.97000 * 120.00034 * 146.48662 * 14 13 12 32 32 H 0.96999 * 120.00178 * 0.02562 * 17 15 14 33 33 H 1.09006 * 109.46692 * 60.00133 * 18 17 15 34 34 H 1.09000 * 109.47392 * 300.00915 * 18 17 15 35 35 H 1.09007 * 110.40823 * 81.20526 * 20 19 18 36 36 H 1.08999 * 110.46402 * 318.86176 * 20 19 18 37 37 H 1.08997 * 110.40646 * 241.18976 * 21 20 19 38 38 H 1.09003 * 110.50016 * 118.81952 * 21 20 19 39 39 H 1.08998 * 115.92407 * 160.02685 * 22 21 20 40 40 H 1.09003 * 110.40128 * 189.06408 * 23 22 21 41 41 H 1.08997 * 110.40840 * 311.48796 * 23 22 21 42 42 H 1.09006 * 110.43843 * 241.18981 * 24 23 22 43 43 H 1.08997 * 110.46663 * 118.82030 * 24 23 22 44 44 H 1.09006 * 112.02673 * 62.87254 * 25 19 18 45 45 H 1.08995 * 112.02454 * 296.43003 * 25 19 18 46 46 H 1.08001 * 120.15434 * 180.23683 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3776 2.1113 -1.3940 5 1 1.5004 2.6176 0.8094 6 1 3.5914 1.4103 0.5848 7 6 2.0080 -1.2119 -0.0005 8 1 1.4910 -2.1339 0.2208 9 6 3.3918 -1.2292 -0.2909 10 6 3.9522 -0.2460 -1.1282 11 6 5.2999 -0.2696 -1.4068 12 6 6.1095 -1.2535 -0.8628 13 6 5.5681 -2.2354 -0.0372 14 7 6.3943 -3.2275 0.5030 15 6 7.4497 -3.6826 -0.2011 16 8 7.6314 -3.2989 -1.3404 17 7 8.3036 -4.5629 0.3579 18 6 9.4504 -5.0580 -0.4076 19 6 10.2525 -6.0373 0.4516 20 6 10.8777 -5.4510 1.7566 21 6 12.0045 -6.4410 2.1303 22 6 11.9550 -7.5326 1.0179 23 6 10.6350 -8.3143 1.2966 24 6 9.5072 -7.3239 0.9215 25 6 11.5245 -6.6669 -0.2185 26 6 4.2164 -2.2286 0.2543 27 1 -0.4850 0.8401 -0.0004 28 1 3.3259 0.5255 -1.5511 29 1 5.7291 0.4848 -2.0496 30 1 7.1666 -1.2612 -1.0835 31 1 6.2075 -3.5876 1.3841 32 1 8.1584 -4.8693 1.2667 33 1 10.0859 -4.2196 -0.6930 34 1 9.0964 -5.5672 -1.3040 35 1 10.1311 -5.4081 2.5497 36 1 11.2896 -4.4593 1.5696 37 1 11.8119 -6.8849 3.1069 38 1 12.9715 -5.9380 2.1263 39 1 12.8584 -8.1303 0.8963 40 1 10.5814 -9.2049 0.6704 41 1 10.5689 -8.5851 2.3504 42 1 8.8862 -7.1072 1.7907 43 1 8.8990 -7.7276 0.1121 44 1 12.2703 -5.9124 -0.4692 45 1 11.2697 -7.2836 -1.0803 46 1 3.7963 -2.9876 0.8977 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575222407.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:24 Heat of formation + Delta-G solvation = -31.774800 kcal Electronic energy + Delta-G solvation = -25432.409485 eV Core-core repulsion = 21899.142046 eV Total energy + Delta-G solvation = -3533.267438 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.68736 -41.00272 -39.33475 -36.27572 -35.71745 -35.01278 -32.18046 -31.43232 -31.31829 -29.93259 -28.77194 -27.03232 -26.08703 -23.44868 -23.02007 -22.86347 -21.77287 -20.67158 -19.69814 -19.46407 -19.08143 -17.86268 -17.35782 -16.85238 -16.50213 -16.25810 -16.09058 -15.97383 -15.77909 -15.46153 -14.96759 -14.61063 -14.39746 -14.19379 -13.82435 -13.46845 -13.44500 -13.29338 -12.87162 -12.61211 -12.58239 -12.43303 -12.22851 -12.03752 -11.93978 -11.82429 -11.71951 -11.70071 -11.54065 -11.33249 -11.17943 -11.13519 -10.76458 -10.71822 -10.11024 -9.54515 -8.87081 -8.79566 -6.51433 0.72611 0.80135 1.29782 1.43568 1.52397 1.64098 2.10913 2.16149 2.66605 3.20079 3.48241 3.50505 3.52591 3.59047 3.98629 4.21763 4.27244 4.29365 4.44304 4.44636 4.51921 4.57312 4.59494 4.61386 4.71691 4.81617 4.86095 4.88377 4.92861 4.98312 5.01772 5.11805 5.13362 5.20661 5.23348 5.27650 5.34003 5.41791 5.43665 5.43853 5.53626 5.59402 5.68528 5.81627 5.94292 6.05966 6.26162 6.41405 6.71441 6.83307 7.04631 7.54103 8.20984 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.034865 B = 0.002384 C = 0.002329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.908791 B =11739.729918 C =12021.234313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.853 5.853 2 C 0.046 3.954 3 Si 0.968 3.032 4 H -0.263 1.263 5 H -0.281 1.281 6 H -0.247 1.247 7 C -0.478 4.478 8 H 0.059 0.941 9 C 0.089 3.911 10 C -0.259 4.259 11 C -0.070 4.070 12 C -0.229 4.229 13 C 0.196 3.804 14 N -0.674 5.674 15 C 0.699 3.301 16 O -0.615 6.615 17 N -0.722 5.722 18 C 0.172 3.828 19 C -0.087 4.087 20 C -0.114 4.114 21 C -0.118 4.118 22 C -0.099 4.099 23 C -0.117 4.117 24 C -0.114 4.114 25 C -0.113 4.113 26 C -0.240 4.240 27 H 0.293 0.707 28 H 0.098 0.902 29 H 0.125 0.875 30 H 0.113 0.887 31 H 0.417 0.583 32 H 0.410 0.590 33 H 0.060 0.940 34 H 0.057 0.943 35 H 0.068 0.932 36 H 0.058 0.942 37 H 0.070 0.930 38 H 0.066 0.934 39 H 0.110 0.890 40 H 0.065 0.935 41 H 0.070 0.930 42 H 0.069 0.931 43 H 0.057 0.943 44 H 0.072 0.928 45 H 0.071 0.929 46 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.945 -13.486 6.362 28.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C -0.168 4.168 3 Si 0.793 3.207 4 H -0.189 1.189 5 H -0.208 1.208 6 H -0.170 1.170 7 C -0.508 4.508 8 H 0.077 0.923 9 C 0.085 3.915 10 C -0.279 4.279 11 C -0.089 4.089 12 C -0.250 4.250 13 C 0.101 3.899 14 N -0.322 5.322 15 C 0.399 3.601 16 O -0.494 6.494 17 N -0.378 5.378 18 C 0.048 3.952 19 C -0.088 4.088 20 C -0.151 4.151 21 C -0.156 4.156 22 C -0.117 4.117 23 C -0.155 4.155 24 C -0.152 4.152 25 C -0.151 4.151 26 C -0.262 4.262 27 H 0.104 0.896 28 H 0.116 0.884 29 H 0.143 0.857 30 H 0.131 0.869 31 H 0.255 0.745 32 H 0.247 0.753 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.087 0.913 36 H 0.077 0.923 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.129 0.871 40 H 0.084 0.916 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.076 0.924 44 H 0.091 0.909 45 H 0.090 0.910 46 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 23.898 -13.121 5.391 27.791 hybrid contribution -0.688 0.337 0.594 0.970 sum 23.209 -12.784 5.986 27.165 Atomic orbital electron populations 1.69694 1.09042 1.31384 1.37795 1.26821 0.95436 1.04224 0.90358 0.85457 0.79735 0.76341 0.79175 1.18854 1.20837 1.17041 1.19430 0.92633 0.95152 1.43560 0.92269 1.17637 0.92694 0.91618 0.89504 1.21074 0.95970 1.04113 1.06732 1.20795 0.92911 0.97429 0.97722 1.20616 0.99439 0.97885 1.07073 1.17274 0.88758 0.87943 0.95930 1.42437 1.27904 1.40576 1.21266 1.16088 0.80045 0.79801 0.84138 1.90918 1.76361 1.63304 1.18822 1.44853 1.27447 1.46865 1.18642 1.20692 0.85108 0.95921 0.93435 1.22995 0.95639 0.94459 0.95662 1.22653 0.98075 0.98552 0.95861 1.22610 0.98255 0.96165 0.98525 1.23571 0.97780 0.96041 0.94356 1.22616 0.93808 0.97514 1.01530 1.22635 0.97511 0.94299 1.00728 1.23538 0.95377 0.98614 0.97593 1.20789 0.90885 1.05062 1.09507 0.89627 0.88423 0.85668 0.86904 0.74530 0.75344 0.92199 0.92492 0.91289 0.92323 0.91144 0.91546 0.87146 0.91613 0.91085 0.91247 0.92447 0.90919 0.91039 0.86832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -47.22 13.93 21.82 0.30 -46.91 16 2 C 0.05 2.48 5.46 85.25 0.47 2.94 16 3 Si 0.97 43.58 24.37 68.60 1.67 45.25 16 4 H -0.26 -11.32 6.76 99.48 0.67 -10.64 16 5 H -0.28 -11.86 7.11 99.48 0.71 -11.16 16 6 H -0.25 -11.25 6.51 99.48 0.65 -10.60 16 7 C -0.48 -27.01 9.61 23.46 0.23 -26.78 16 8 H 0.06 3.56 8.06 -2.91 -0.02 3.54 16 9 C 0.09 4.61 5.18 -21.31 -0.11 4.50 16 10 C -0.26 -12.77 6.94 22.75 0.16 -12.61 16 11 C -0.07 -3.12 10.02 22.20 0.22 -2.90 16 12 C -0.23 -10.11 8.66 22.58 0.20 -9.92 16 13 C 0.20 8.25 6.27 38.10 0.24 8.49 16 14 N -0.67 -21.76 5.34 -317.32 -1.70 -23.45 16 15 C 0.70 22.55 8.30 179.05 1.49 24.04 16 16 O -0.61 -25.51 14.02 -3.99 -0.06 -25.57 16 17 N -0.72 -15.64 5.38 -478.54 -2.58 -18.22 16 18 C 0.17 3.43 5.50 86.38 0.48 3.91 16 19 C -0.09 -1.18 1.01 -48.70 -0.05 -1.23 16 20 C -0.11 -1.37 5.64 32.22 0.18 -1.19 16 21 C -0.12 -1.16 6.21 32.15 0.20 -0.96 16 22 C -0.10 -0.94 5.19 -7.38 -0.04 -0.98 16 23 C -0.12 -1.17 6.21 32.19 0.20 -0.97 16 24 C -0.11 -1.41 5.66 32.20 0.18 -1.23 16 25 C -0.11 -1.35 6.11 33.37 0.20 -1.15 16 26 C -0.24 -11.13 9.70 22.85 0.22 -10.90 16 27 H 0.29 14.61 8.30 -92.70 -0.77 13.84 16 28 H 0.10 4.75 4.22 -2.91 -0.01 4.74 16 29 H 0.13 4.79 8.06 -2.91 -0.02 4.77 16 30 H 0.11 4.94 6.40 -2.91 -0.02 4.92 16 31 H 0.42 10.12 8.83 -92.71 -0.82 9.30 16 32 H 0.41 6.34 8.21 -92.71 -0.76 5.58 16 33 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 34 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.07 0.76 7.84 -2.38 -0.02 0.74 16 36 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.07 0.62 7.83 -2.39 -0.02 0.61 16 38 H 0.07 0.62 8.14 -2.39 -0.02 0.61 16 39 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 41 H 0.07 0.64 7.83 -2.39 -0.02 0.62 16 42 H 0.07 0.78 7.84 -2.38 -0.02 0.76 16 43 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 44 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 45 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 46 H 0.11 4.88 8.06 -2.91 -0.02 4.86 16 Total: -1.00 -67.50 359.86 1.43 -66.07 By element: Atomic # 1 Polarization: 30.44 SS G_CDS: -0.67 Total: 29.77 kcal Atomic # 6 Polarization: -31.40 SS G_CDS: 4.46 Total: -26.94 kcal Atomic # 7 Polarization: -84.62 SS G_CDS: -3.97 Total: -88.58 kcal Atomic # 8 Polarization: -25.51 SS G_CDS: -0.06 Total: -25.57 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 1.67 Total: 45.25 kcal Total: -67.50 1.43 -66.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575222407.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.297 kcal (2) G-P(sol) polarization free energy of solvation -67.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds