Wall clock time and date at job start Tue Mar 31 2020 10:57:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30835 * 1 3 3 Si 1.86798 * 120.00177 * 2 1 4 4 H 1.48495 * 109.46970 * 240.00106 * 3 2 1 5 5 H 1.48504 * 109.46897 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47241 * 119.99670 * 3 2 1 7 7 C 1.39931 * 119.99849 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00390 * 196.78954 * 7 2 1 9 9 C 1.41413 * 120.00232 * 16.78821 * 7 2 1 10 10 C 1.40776 * 120.20649 * 25.17800 * 9 7 2 11 11 C 1.37650 * 119.87947 * 180.02562 * 10 9 7 12 12 C 1.38522 * 120.32124 * 359.97438 * 11 10 9 13 13 C 1.39240 * 120.43320 * 0.04946 * 12 11 10 14 14 N 1.39959 * 119.94880 * 179.97438 * 13 12 11 15 15 C 1.34782 * 120.00092 * 145.76368 * 14 13 12 16 16 O 1.21584 * 119.99832 * 354.84776 * 15 14 13 17 17 N 1.34776 * 119.99919 * 174.84466 * 15 14 13 18 18 C 1.46497 * 119.99989 * 180.02562 * 17 15 14 19 19 C 1.53007 * 109.46979 * 180.02562 * 18 17 15 20 20 H 1.08996 * 115.56036 * 29.31555 * 19 18 17 21 21 C 1.52997 * 117.49690 * 243.62358 * 19 18 17 22 22 C 1.52996 * 117.49472 * 175.00059 * 19 18 17 23 23 H 1.08996 * 117.50578 * 359.97438 * 22 19 18 24 24 C 1.52998 * 117.51568 * 214.96940 * 22 19 18 25 25 C 1.53785 * 113.61474 * 159.25870 * 24 22 19 26 26 C 1.53953 * 87.01966 * 220.04868 * 25 24 22 27 27 C 1.53778 * 113.61557 * 61.65201 * 24 22 19 28 28 C 1.38275 * 120.10571 * 0.22383 * 13 12 11 29 29 H 0.96997 * 120.00019 * 0.02562 * 1 2 3 30 30 H 1.07994 * 120.06141 * 359.97438 * 10 9 7 31 31 H 1.08006 * 119.83237 * 180.02562 * 11 10 9 32 32 H 1.08010 * 119.78181 * 180.02562 * 12 11 10 33 33 H 0.96999 * 119.99713 * 325.76229 * 14 13 12 34 34 H 0.97003 * 119.99497 * 0.02562 * 17 15 14 35 35 H 1.08994 * 109.47028 * 60.00114 * 18 17 15 36 36 H 1.09002 * 109.46988 * 300.00119 * 18 17 15 37 37 H 1.09003 * 117.50116 * 145.02283 * 21 19 18 38 38 H 1.09000 * 117.51762 * 359.97438 * 21 19 18 39 39 H 1.09003 * 112.85229 * 290.45416 * 24 22 19 40 40 H 1.08998 * 113.61332 * 334.56451 * 25 24 22 41 41 H 1.08994 * 113.61697 * 105.47100 * 25 24 22 42 42 H 1.09001 * 113.53712 * 270.80956 * 26 25 24 43 43 H 1.09002 * 113.74580 * 139.94034 * 26 25 24 44 44 H 1.09006 * 113.61407 * 254.52785 * 27 24 22 45 45 H 1.09000 * 113.61806 * 25.42907 * 27 24 22 46 46 H 1.07998 * 120.16194 * 179.74610 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 3.0961 1.6963 -1.2125 5 1 1.2774 2.7464 -0.0006 6 1 3.0961 1.6964 1.2125 7 6 2.0080 -1.2119 0.0005 8 1 3.0535 -1.2318 0.2707 9 6 1.3461 -2.4106 -0.3526 10 6 0.2109 -2.3743 -1.1844 11 6 -0.4284 -3.5452 -1.5235 12 6 0.0400 -4.7600 -1.0507 13 6 1.1614 -4.8112 -0.2269 14 7 1.6257 -6.0442 0.2455 15 6 2.9473 -6.2463 0.4158 16 8 3.7421 -5.3930 0.0715 17 7 3.3879 -7.3942 0.9678 18 6 4.8244 -7.6136 1.1534 19 6 5.0523 -8.9843 1.7941 20 1 4.3018 -9.7409 1.5655 21 6 5.6874 -9.0167 3.1856 22 6 6.4988 -9.4528 1.9640 23 1 7.2881 -8.7849 1.6190 24 6 6.7815 -10.9475 1.8006 25 6 8.2528 -11.2653 1.4852 26 6 7.7288 -12.3279 0.5021 27 6 6.4440 -11.4889 0.4014 28 6 1.8140 -3.6454 0.1296 29 1 -0.4850 0.8400 -0.0004 30 1 -0.1582 -1.4295 -1.5550 31 1 -1.2991 -3.5165 -2.1620 32 1 -0.4681 -5.6735 -1.3226 33 1 0.9962 -6.7532 0.4503 34 1 2.7537 -8.0750 1.2421 35 1 5.2297 -6.8370 1.8019 36 1 5.3255 -7.5772 0.1860 37 1 5.3547 -9.7948 3.8727 38 1 5.9433 -8.0619 3.6448 39 1 6.3695 -11.5474 2.6120 40 1 8.7824 -10.4453 1.0003 41 1 8.8000 -11.6831 2.3302 42 1 7.5769 -13.3060 0.9585 43 1 8.2913 -12.3786 -0.4302 44 1 5.5331 -12.0870 0.3727 45 1 6.4781 -10.7301 -0.3804 46 1 2.6814 -3.6837 0.7718 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000577505643.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:53 Heat of formation + Delta-G solvation = 27.518707 kcal Electronic energy + Delta-G solvation = -24635.467796 eV Core-core repulsion = 21104.771517 eV Total energy + Delta-G solvation = -3530.696279 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.03315 -39.54456 -37.47678 -36.73112 -34.39174 -33.88485 -32.89610 -29.74981 -28.56396 -27.01584 -25.92181 -25.63057 -25.19285 -21.86067 -21.35421 -21.00312 -20.78400 -19.91173 -19.63550 -17.88936 -17.56283 -16.34126 -15.84427 -15.57410 -15.21911 -15.05112 -14.57285 -14.45505 -14.25870 -13.92956 -13.53958 -13.19432 -12.89312 -12.82001 -12.75890 -12.72840 -12.13349 -11.97773 -11.59777 -11.57481 -11.16400 -11.07863 -11.05821 -10.95371 -10.85154 -10.78737 -10.44152 -10.16153 -10.06968 -10.00129 -9.64430 -9.41873 -9.05475 -8.94872 -8.80665 -7.37743 -6.82381 -6.64178 -4.27127 2.78544 2.91809 3.07801 3.12311 3.16587 3.28292 3.46838 3.79535 4.01269 4.16362 4.31248 4.35231 4.52047 4.60827 4.70031 4.71763 4.75180 4.86439 5.07465 5.13991 5.36807 5.43208 5.45782 5.51603 5.58473 5.64217 5.66293 5.73044 5.78781 5.86930 5.95466 6.02880 6.19171 6.30080 6.46396 6.64464 6.85795 6.87201 7.10965 7.16048 7.31045 7.42400 7.75761 7.90494 8.06569 8.17525 8.31835 8.51266 8.73099 8.96959 9.04313 9.12200 10.27940 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.021394 B = 0.002232 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.450616 B =12539.305378 C =13368.289797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.075 3.925 3 Si 0.909 3.091 4 H -0.264 1.264 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.458 4.458 8 H 0.077 0.923 9 C 0.120 3.880 10 C -0.173 4.173 11 C -0.092 4.092 12 C -0.263 4.263 13 C 0.170 3.830 14 N -0.682 5.682 15 C 0.697 3.303 16 O -0.567 6.567 17 N -0.749 5.749 18 C 0.172 3.828 19 C -0.158 4.158 20 H 0.109 0.891 21 C -0.172 4.172 22 C -0.131 4.131 23 H 0.108 0.892 24 C -0.081 4.081 25 C -0.134 4.134 26 C -0.146 4.146 27 C -0.134 4.134 28 C -0.210 4.210 29 H 0.279 0.721 30 H 0.119 0.881 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.393 0.607 34 H 0.392 0.608 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.094 0.906 38 H 0.097 0.903 39 H 0.089 0.911 40 H 0.082 0.918 41 H 0.065 0.935 42 H 0.077 0.923 43 H 0.067 0.933 44 H 0.064 0.936 45 H 0.084 0.916 46 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.259 -20.754 4.360 23.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.142 4.142 3 Si 0.733 3.267 4 H -0.188 1.188 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.488 4.488 8 H 0.095 0.905 9 C 0.117 3.883 10 C -0.193 4.193 11 C -0.111 4.111 12 C -0.285 4.285 13 C 0.077 3.923 14 N -0.328 5.328 15 C 0.398 3.602 16 O -0.443 6.443 17 N -0.406 5.406 18 C 0.047 3.953 19 C -0.177 4.177 20 H 0.127 0.873 21 C -0.209 4.209 22 C -0.150 4.150 23 H 0.126 0.874 24 C -0.099 4.099 25 C -0.172 4.172 26 C -0.183 4.183 27 C -0.172 4.172 28 C -0.231 4.231 29 H 0.090 0.910 30 H 0.136 0.864 31 H 0.109 0.891 32 H 0.106 0.894 33 H 0.227 0.773 34 H 0.226 0.774 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.112 0.888 38 H 0.115 0.885 39 H 0.107 0.893 40 H 0.101 0.899 41 H 0.084 0.916 42 H 0.096 0.904 43 H 0.085 0.915 44 H 0.083 0.917 45 H 0.102 0.898 46 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 9.839 -19.798 4.080 22.481 hybrid contribution -0.381 -0.010 0.326 0.502 sum 9.458 -19.808 4.406 22.388 Atomic orbital electron populations 1.69826 1.07493 1.29109 1.35820 1.25897 0.94740 1.01214 0.92312 0.86366 0.80105 0.80209 0.80005 1.18834 1.20427 1.19056 1.19542 0.97741 0.90946 1.40573 0.90453 1.17490 0.90888 0.91627 0.88307 1.21332 0.99431 0.96824 1.01719 1.20441 0.98515 0.92695 0.99486 1.20005 1.02668 0.96856 1.08991 1.17226 0.95826 0.82653 0.96560 1.42584 1.05292 1.15795 1.69151 1.15966 0.82947 0.82282 0.79020 1.90977 1.54213 1.43898 1.55169 1.45080 1.07946 1.19525 1.68075 1.20650 0.80537 0.93816 1.00276 1.22495 0.96941 0.98162 1.00105 0.87342 1.23237 1.03680 1.03251 0.90748 1.22402 0.93862 0.96185 1.02512 0.87399 1.22146 0.96917 0.93232 0.97628 1.22982 0.95857 0.99050 0.99262 1.22857 0.97782 0.97849 0.99841 1.22922 0.97682 0.99319 0.97244 1.20997 1.04336 0.90910 1.06906 0.90970 0.86355 0.89096 0.89404 0.77327 0.77430 0.91533 0.91442 0.88778 0.88470 0.89311 0.89926 0.91600 0.90412 0.91469 0.91698 0.89759 0.87572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.14 10.94 55.55 0.61 -20.54 16 2 C 0.08 1.97 5.16 -17.34 -0.09 1.88 16 3 Si 0.91 19.51 29.59 -169.99 -5.03 14.48 16 4 H -0.26 -5.64 7.11 56.52 0.40 -5.24 16 5 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 6 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 7 C -0.46 -12.89 9.05 -37.74 -0.34 -13.24 16 8 H 0.08 2.15 7.90 -52.49 -0.41 1.73 16 9 C 0.12 3.39 5.57 -106.85 -0.59 2.80 16 10 C -0.17 -4.66 8.69 -38.84 -0.34 -5.00 16 11 C -0.09 -2.21 10.02 -39.69 -0.40 -2.61 16 12 C -0.26 -5.96 9.97 -39.10 -0.39 -6.35 16 13 C 0.17 3.98 6.25 -83.76 -0.52 3.45 16 14 N -0.68 -12.63 5.34 -14.27 -0.08 -12.71 16 15 C 0.70 13.11 8.29 -86.91 -0.72 12.39 16 16 O -0.57 -13.46 14.10 5.29 0.07 -13.39 16 17 N -0.75 -9.87 5.56 -65.22 -0.36 -10.23 16 18 C 0.17 2.04 5.96 -4.04 -0.02 2.02 16 19 C -0.16 -1.34 5.41 -90.62 -0.49 -1.83 16 20 H 0.11 0.83 8.04 -51.93 -0.42 0.41 16 21 C -0.17 -1.34 9.86 -26.73 -0.26 -1.61 16 22 C -0.13 -1.01 5.25 -90.62 -0.48 -1.48 16 23 H 0.11 0.87 7.97 -51.93 -0.41 0.45 16 24 C -0.08 -0.55 3.87 -89.81 -0.35 -0.89 16 25 C -0.13 -0.85 7.65 -25.83 -0.20 -1.05 16 26 C -0.15 -0.90 8.09 -25.83 -0.21 -1.11 16 27 C -0.13 -0.92 7.49 -25.92 -0.19 -1.11 16 28 C -0.21 -5.63 8.39 -38.69 -0.32 -5.96 16 29 H 0.28 6.75 8.30 -40.82 -0.34 6.41 16 30 H 0.12 3.25 6.17 -52.49 -0.32 2.93 16 31 H 0.09 1.91 8.06 -52.48 -0.42 1.49 16 32 H 0.09 1.71 8.06 -52.48 -0.42 1.29 16 33 H 0.39 5.60 8.84 -40.82 -0.36 5.24 16 34 H 0.39 3.85 8.42 -40.82 -0.34 3.50 16 35 H 0.07 0.88 7.88 -51.93 -0.41 0.47 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.09 0.64 8.13 -51.93 -0.42 0.22 16 38 H 0.10 0.81 8.03 -51.93 -0.42 0.39 16 39 H 0.09 0.57 8.07 -51.93 -0.42 0.15 16 40 H 0.08 0.54 7.98 -51.93 -0.41 0.12 16 41 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 42 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.08 0.64 8.10 -51.93 -0.42 0.22 16 46 H 0.11 2.96 6.48 -52.49 -0.34 2.62 16 LS Contribution 378.92 15.07 5.71 5.71 Total: -1.00 -31.95 378.92 -12.21 -44.16 By element: Atomic # 1 Polarization: 19.42 SS G_CDS: -7.21 Total: 12.21 kcal Atomic # 6 Polarization: -13.77 SS G_CDS: -5.92 Total: -19.69 kcal Atomic # 7 Polarization: -43.65 SS G_CDS: 0.17 Total: -43.48 kcal Atomic # 8 Polarization: -13.46 SS G_CDS: 0.07 Total: -13.39 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.03 Total: 14.48 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.95 -12.21 -44.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577505643.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.681 kcal (2) G-P(sol) polarization free energy of solvation -31.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds